Wall clock time and date at job start Tue Mar 31 2020 15:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48497 * 109.46957 * 269.99998 * 3 2 1 5 5 H 1.48504 * 109.47174 * 29.99673 * 3 2 1 6 6 H 1.48499 * 109.46983 * 149.99973 * 3 2 1 7 7 C 1.38812 * 120.00668 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99185 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.53002 * 109.47233 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 12 16 16 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 17 17 N 1.46496 * 109.47414 * 180.02562 * 15 14 13 18 18 C 1.34772 * 120.00151 * 84.99440 * 17 15 14 19 19 O 1.21574 * 120.00193 * 0.02562 * 18 17 15 20 20 C 1.47711 * 120.00236 * 179.97438 * 18 17 15 21 21 C 1.41500 * 126.52091 * 179.71260 * 20 18 17 22 22 C 1.35368 * 105.50366 * 179.90219 * 21 20 18 23 23 N 1.35035 * 107.22925 * 0.35934 * 22 21 20 24 24 C 1.46493 * 124.88657 * 179.76063 * 23 22 21 25 25 F 1.39901 * 109.47022 * 300.02556 * 24 23 22 26 26 F 1.39905 * 109.47194 * 60.02164 * 24 23 22 27 27 N 1.28472 * 110.22810 * 359.76523 * 23 22 21 28 28 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 29 29 H 0.96997 * 120.00544 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47399 * 300.00063 * 12 10 9 32 32 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 33 33 H 1.08993 * 109.47662 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47075 * 300.00932 * 13 12 10 35 35 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 36 36 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 37 37 H 0.96994 * 120.00122 * 265.00254 * 17 15 14 38 38 H 1.07998 * 127.25128 * 0.02562 * 21 20 18 39 39 H 1.08004 * 126.38371 * 180.08880 * 22 21 20 40 40 H 1.08997 * 109.47400 * 180.02562 * 24 23 22 41 41 H 1.08996 * 109.47853 * 300.00060 * 28 10 9 42 42 H 1.09002 * 109.47153 * 60.00089 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5651 -3.2062 -0.5888 12 6 4.2579 -2.9755 1.4380 13 6 5.0224 -4.3008 1.4380 14 6 6.4097 -4.0892 0.8288 15 6 6.2642 -3.5843 -0.6082 16 1 5.7167 -4.3196 -1.1979 17 7 7.5926 -3.3822 -1.1918 18 6 8.2443 -4.4170 -1.7583 19 8 7.7295 -5.5180 -1.7856 20 6 9.5835 -4.2132 -2.3473 21 6 10.3890 -5.1970 -2.9682 22 6 11.5158 -4.5525 -3.3522 23 7 11.3880 -3.2629 -2.9727 24 6 12.3933 -2.2207 -3.1944 25 9 13.5849 -2.5785 -2.5547 26 9 12.6249 -2.0806 -4.5671 27 7 10.2579 -3.0814 -2.3891 28 6 5.4996 -2.2585 -0.6080 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3619 0.0014 31 1 4.8049 -2.2401 2.0278 32 1 3.2694 -3.1267 1.8719 33 1 5.1258 -4.6607 2.4616 34 1 4.4749 -5.0361 0.8482 35 1 6.9572 -3.3539 1.4185 36 1 6.9543 -5.0334 0.8283 37 1 8.0033 -2.5038 -1.1704 38 1 10.1535 -6.2416 -3.1082 39 1 12.3614 -4.9894 -3.8627 40 1 12.0326 -1.2756 -2.7885 41 1 5.3960 -1.8988 -1.6317 42 1 6.0467 -1.5230 -0.0182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981117841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:12 Heat of formation + Delta-G solvation = -42.401835 kcal Electronic energy + Delta-G solvation = -27417.528945 eV Core-core repulsion = 23070.493192 eV Total energy + Delta-G solvation = -4347.035753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.07597 -48.16173 -43.13615 -39.88680 -37.99120 -34.83970 -33.62389 -33.19847 -31.41676 -31.30846 -29.56076 -28.29519 -27.03221 -24.09103 -23.37912 -22.13810 -22.02589 -21.06141 -20.30328 -19.57490 -19.23886 -18.62903 -18.23634 -17.73834 -17.23751 -16.20810 -16.05235 -15.22494 -14.99051 -14.77508 -14.60658 -14.50897 -14.47183 -14.28083 -14.01866 -13.83228 -13.76759 -13.46404 -13.18354 -12.79829 -12.67559 -12.28186 -12.24328 -11.58766 -11.26968 -11.03888 -10.96992 -10.86507 -10.50242 -10.40015 -10.29783 -10.07516 -10.03976 -9.80345 -9.76899 -9.58151 -9.06498 -8.89574 -7.26963 -5.76334 -3.12002 0.94932 1.14559 1.62485 2.79603 2.96726 3.15246 3.36859 3.38024 3.39325 3.44964 3.85778 4.11149 4.17830 4.59025 4.65409 4.83736 5.00279 5.09410 5.24893 5.25960 5.44629 5.51798 5.58460 5.62212 5.75518 5.78876 5.82180 5.92862 5.93680 6.07123 6.20832 6.22539 6.37416 6.47393 6.51759 6.64916 6.89334 7.03477 7.09020 7.46020 8.00361 8.04755 8.42720 9.21131 9.93549 10.13231 11.42050 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002509 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.462649 B =11155.149966 C =12350.401657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.188 3.812 11 H 0.058 0.942 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.148 3.852 16 H 0.093 0.907 17 N -0.708 5.708 18 C 0.602 3.398 19 O -0.525 6.525 20 C 0.016 3.984 21 C -0.168 4.168 22 C -0.002 4.002 23 N -0.349 5.349 24 C 0.497 3.503 25 F -0.174 7.174 26 F -0.173 7.173 27 N -0.250 5.250 28 C -0.134 4.134 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.405 0.595 38 H 0.172 0.828 39 H 0.188 0.812 40 H 0.173 0.827 41 H 0.070 0.930 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.063 -7.129 -5.330 30.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.078 3.922 11 H 0.076 0.924 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.164 4.164 15 C 0.044 3.956 16 H 0.111 0.889 17 N -0.358 5.358 18 C 0.385 3.615 19 O -0.399 6.399 20 C -0.148 4.148 21 C -0.195 4.195 22 C -0.142 4.142 23 N -0.146 5.146 24 C 0.364 3.636 25 F -0.155 7.155 26 F -0.155 7.155 27 N -0.083 5.083 28 C -0.172 4.172 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.189 0.811 39 H 0.205 0.795 40 H 0.190 0.810 41 H 0.089 0.911 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 28.507 -6.744 -5.108 29.736 hybrid contribution 1.144 0.852 -0.317 1.462 sum 29.651 -5.892 -5.425 30.714 Atomic orbital electron populations 1.69696 1.05099 1.25783 1.57638 1.24674 0.95220 0.97174 1.02149 0.86554 0.79189 0.85084 0.77704 1.21154 1.21821 1.20363 1.19080 0.80527 0.94726 1.42782 0.89121 1.42768 1.04014 1.01926 1.90326 1.20072 0.89353 0.89304 0.93433 0.92355 1.22260 1.00245 0.95276 0.99986 1.21479 0.94919 0.98721 1.00188 1.21903 0.98241 1.01054 0.95160 1.21106 0.81530 0.98651 0.94273 0.88908 1.46022 1.19433 1.12080 1.58269 1.16799 0.82238 0.84745 0.77727 1.90827 1.66570 1.24154 1.58375 1.22291 0.97135 0.90476 1.04905 1.21935 0.92969 1.01490 1.03093 1.23013 1.02288 0.84317 1.04535 1.46513 1.14386 1.09088 1.44576 1.21193 0.75434 0.91071 0.75944 1.93162 1.47691 1.93293 1.81390 1.93167 1.94350 1.95507 1.32456 1.73488 0.94002 1.25955 1.14867 1.22145 0.97454 0.95519 1.02124 0.93084 0.80735 0.92772 0.91370 0.92287 0.91874 0.92017 0.91922 0.76046 0.81099 0.79506 0.81002 0.91101 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.87 27.74 -169.99 -4.71 17.15 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 7 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 N -0.75 -17.20 4.92 -53.43 -0.26 -17.46 16 10 C 0.19 3.46 2.77 -67.93 -0.19 3.28 16 11 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 12 C -0.14 -2.31 5.50 -26.73 -0.15 -2.45 16 13 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 14 C -0.12 -1.61 5.49 -26.73 -0.15 -1.75 16 15 C 0.15 1.98 2.46 -67.90 -0.17 1.81 16 16 H 0.09 1.38 7.57 -51.93 -0.39 0.99 16 17 N -0.71 -8.44 5.07 -54.77 -0.28 -8.72 16 18 C 0.60 7.89 7.79 -12.39 -0.10 7.80 16 19 O -0.53 -8.40 16.59 5.30 0.09 -8.31 16 20 C 0.02 0.18 7.13 -82.76 -0.59 -0.41 16 21 C -0.17 -1.54 10.81 -39.36 -0.43 -1.97 16 22 C 0.00 -0.01 11.33 -17.17 -0.19 -0.21 16 23 N -0.35 -2.70 3.56 -66.62 -0.24 -2.94 16 24 C 0.50 2.38 6.24 59.84 0.37 2.75 16 25 F -0.17 -0.97 17.46 2.25 0.04 -0.93 16 26 F -0.17 -1.00 17.46 2.25 0.04 -0.96 16 27 N -0.25 -2.44 11.67 33.42 0.39 -2.05 16 28 C -0.13 -1.96 4.86 -26.71 -0.13 -2.09 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 4.14 8.33 -40.82 -0.34 3.80 16 38 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.19 0.74 8.06 -52.48 -0.42 0.31 16 40 H 0.17 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -34.05 360.79 -6.47 -40.52 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.63 Total: 8.54 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.12 Total: -1.82 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.39 Total: -59.62 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.08 Total: -1.89 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.05 -6.47 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981117841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.881 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds