Wall clock time and date at job start Tue Mar 31 2020 15:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48497 * 109.46957 * 269.99998 * 3 2 1 5 5 H 1.48504 * 109.47174 * 29.99673 * 3 2 1 6 6 H 1.48499 * 109.46983 * 149.99973 * 3 2 1 7 7 C 1.38812 * 120.00668 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99185 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.53002 * 109.47233 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46817 * 60.00194 * 13 12 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 12 16 16 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 17 17 N 1.46496 * 109.47414 * 180.02562 * 15 14 13 18 18 C 1.34772 * 120.00151 * 84.99440 * 17 15 14 19 19 O 1.21574 * 120.00193 * 0.02562 * 18 17 15 20 20 C 1.47711 * 120.00236 * 179.97438 * 18 17 15 21 21 C 1.41500 * 126.52091 * 179.71260 * 20 18 17 22 22 C 1.35368 * 105.50366 * 179.90219 * 21 20 18 23 23 N 1.35035 * 107.22925 * 0.35934 * 22 21 20 24 24 C 1.46493 * 124.88657 * 179.76063 * 23 22 21 25 25 F 1.39901 * 109.47022 * 300.02556 * 24 23 22 26 26 F 1.39905 * 109.47194 * 60.02164 * 24 23 22 27 27 N 1.28472 * 110.22810 * 359.76523 * 23 22 21 28 28 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 29 29 H 0.96997 * 120.00544 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47399 * 300.00063 * 12 10 9 32 32 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 33 33 H 1.08993 * 109.47662 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47075 * 300.00932 * 13 12 10 35 35 H 1.09002 * 109.47153 * 60.00231 * 14 13 12 36 36 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 37 37 H 0.96994 * 120.00122 * 265.00254 * 17 15 14 38 38 H 1.07998 * 127.25128 * 0.02562 * 21 20 18 39 39 H 1.08004 * 126.38371 * 180.08880 * 22 21 20 40 40 H 1.08997 * 109.47400 * 180.02562 * 24 23 22 41 41 H 1.08996 * 109.47853 * 300.00060 * 28 10 9 42 42 H 1.09002 * 109.47153 * 60.00089 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5651 -3.2062 -0.5888 12 6 4.2579 -2.9755 1.4380 13 6 5.0224 -4.3008 1.4380 14 6 6.4097 -4.0892 0.8288 15 6 6.2642 -3.5843 -0.6082 16 1 5.7167 -4.3196 -1.1979 17 7 7.5926 -3.3822 -1.1918 18 6 8.2443 -4.4170 -1.7583 19 8 7.7295 -5.5180 -1.7856 20 6 9.5835 -4.2132 -2.3473 21 6 10.3890 -5.1970 -2.9682 22 6 11.5158 -4.5525 -3.3522 23 7 11.3880 -3.2629 -2.9727 24 6 12.3933 -2.2207 -3.1944 25 9 13.5849 -2.5785 -2.5547 26 9 12.6249 -2.0806 -4.5671 27 7 10.2579 -3.0814 -2.3891 28 6 5.4996 -2.2585 -0.6080 29 1 -0.4851 0.8400 -0.0004 30 1 3.8646 -0.3619 0.0014 31 1 4.8049 -2.2401 2.0278 32 1 3.2694 -3.1267 1.8719 33 1 5.1258 -4.6607 2.4616 34 1 4.4749 -5.0361 0.8482 35 1 6.9572 -3.3539 1.4185 36 1 6.9543 -5.0334 0.8283 37 1 8.0033 -2.5038 -1.1704 38 1 10.1535 -6.2416 -3.1082 39 1 12.3614 -4.9894 -3.8627 40 1 12.0326 -1.2756 -2.7885 41 1 5.3960 -1.8988 -1.6317 42 1 6.0467 -1.5230 -0.0182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981117841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:11 Heat of formation + Delta-G solvation = -66.525201 kcal Electronic energy + Delta-G solvation = -27418.575013 eV Core-core repulsion = 23070.493192 eV Total energy + Delta-G solvation = -4348.081821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.46850 -48.55663 -43.78520 -40.97042 -39.26739 -36.36072 -34.91606 -34.01609 -33.24176 -32.05779 -30.79360 -29.77824 -27.64784 -25.44652 -24.73666 -23.24551 -22.74004 -22.34200 -21.34421 -20.89754 -19.81635 -19.57431 -19.04756 -18.66450 -18.18916 -17.42092 -16.77066 -16.49296 -16.19265 -15.73067 -15.46855 -15.38979 -15.30664 -15.11146 -15.04598 -14.87542 -14.81656 -14.63248 -14.48223 -14.21872 -13.74969 -13.48530 -13.18481 -13.01643 -12.87689 -12.35852 -12.29609 -12.17953 -12.03336 -11.79226 -11.67448 -11.64537 -11.43376 -11.10566 -10.90309 -10.78185 -10.39333 -10.09986 -9.29164 -7.99538 -5.33186 0.21227 0.65105 0.94248 1.39385 1.43819 1.51070 2.00551 2.23717 2.44566 2.51233 2.99666 3.31327 3.45977 3.46400 3.47879 3.66769 3.85037 3.93723 4.03025 4.17034 4.28806 4.37988 4.49303 4.51025 4.57132 4.60018 4.65527 4.76370 4.98118 5.06288 5.11857 5.16806 5.21682 5.36165 5.37348 5.41295 5.50914 5.62886 5.80737 6.24394 6.30364 6.61437 7.08644 7.10901 7.86380 8.06752 9.22219 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002509 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.462649 B =11155.149966 C =12350.401657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.247 1.247 7 C -0.227 4.227 8 H 0.053 0.947 9 N -0.750 5.750 10 C 0.180 3.820 11 H 0.038 0.962 12 C -0.129 4.129 13 C -0.107 4.107 14 C -0.116 4.116 15 C 0.156 3.844 16 H 0.074 0.926 17 N -0.698 5.698 18 C 0.602 3.398 19 O -0.562 6.562 20 C -0.010 4.010 21 C -0.185 4.185 22 C 0.009 3.991 23 N -0.348 5.348 24 C 0.497 3.503 25 F -0.177 7.177 26 F -0.178 7.178 27 N -0.250 5.250 28 C -0.120 4.120 29 H 0.257 0.743 30 H 0.367 0.633 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.416 0.584 38 H 0.175 0.825 39 H 0.220 0.780 40 H 0.207 0.793 41 H 0.068 0.932 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.957 -5.990 -5.336 33.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.171 1.171 7 C -0.358 4.358 8 H 0.071 0.929 9 N -0.393 5.393 10 C 0.072 3.928 11 H 0.056 0.944 12 C -0.169 4.169 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.052 3.948 16 H 0.092 0.908 17 N -0.348 5.348 18 C 0.387 3.613 19 O -0.439 6.439 20 C -0.173 4.173 21 C -0.212 4.212 22 C -0.131 4.131 23 N -0.145 5.145 24 C 0.365 3.635 25 F -0.158 7.158 26 F -0.159 7.159 27 N -0.084 5.084 28 C -0.158 4.158 29 H 0.065 0.935 30 H 0.200 0.800 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.252 0.748 38 H 0.193 0.807 39 H 0.237 0.763 40 H 0.224 0.776 41 H 0.087 0.913 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 32.479 -5.612 -5.111 33.354 hybrid contribution -0.025 0.387 -0.364 0.532 sum 32.454 -5.225 -5.475 33.325 Atomic orbital electron populations 1.69894 1.07279 1.26623 1.59993 1.25543 0.96126 1.01422 1.02854 0.85367 0.78752 0.79342 0.78045 1.20498 1.22604 1.17126 1.19004 0.82695 0.93276 1.40813 0.92884 1.42735 1.02343 1.03874 1.90336 1.20273 0.90851 0.87046 0.94612 0.94428 1.22090 0.99318 0.97176 0.98288 1.21408 0.95030 0.96697 1.01409 1.21825 0.97486 1.01545 0.94631 1.20866 0.82054 0.97297 0.94631 0.90825 1.45841 1.18645 1.12521 1.57829 1.17046 0.82861 0.84225 0.77172 1.90803 1.67694 1.25524 1.59833 1.22061 0.96792 0.91789 1.06626 1.22124 0.93587 1.01821 1.03711 1.23506 1.02360 0.83989 1.03205 1.46884 1.14183 1.09990 1.43485 1.21720 0.74774 0.91295 0.75708 1.93160 1.47874 1.93361 1.81422 1.93162 1.94318 1.95417 1.33022 1.73407 0.94621 1.25335 1.15034 1.21943 0.95207 0.96725 1.01958 0.93452 0.80003 0.91861 0.94306 0.90445 0.92505 0.90376 0.91870 0.74763 0.80718 0.76308 0.77643 0.91282 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.73 13.97 21.65 0.30 -63.43 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 3 Si 0.96 44.94 27.74 68.60 1.90 46.84 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.25 -10.22 6.52 99.48 0.65 -9.57 16 7 C -0.23 -12.88 10.41 84.03 0.87 -12.01 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 9 N -0.75 -34.05 4.92 -322.94 -1.59 -35.64 16 10 C 0.18 6.59 2.77 44.99 0.12 6.72 16 11 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 12 C -0.13 -4.23 5.50 30.60 0.17 -4.07 16 13 C -0.11 -2.80 5.92 30.59 0.18 -2.62 16 14 C -0.12 -2.75 5.49 30.60 0.17 -2.58 16 15 C 0.16 3.97 2.46 45.01 0.11 4.08 16 16 H 0.07 2.19 7.57 -2.39 -0.02 2.17 16 17 N -0.70 -15.48 5.07 -445.45 -2.26 -17.74 16 18 C 0.60 15.31 7.79 86.75 0.68 15.98 16 19 O -0.56 -18.00 16.59 -3.95 -0.07 -18.06 16 20 C -0.01 -0.21 7.13 42.46 0.30 0.10 16 21 C -0.19 -3.16 10.81 22.41 0.24 -2.91 16 22 C 0.01 0.11 11.33 83.54 0.95 1.06 16 23 N -0.35 -4.43 3.56 -364.69 -1.30 -5.73 16 24 C 0.50 3.17 6.24 127.77 0.80 3.97 16 25 F -0.18 -1.44 17.46 44.97 0.79 -0.66 16 26 F -0.18 -1.54 17.46 44.97 0.79 -0.76 16 27 N -0.25 -4.30 11.67 -48.18 -0.56 -4.86 16 28 C -0.12 -3.30 4.86 30.61 0.15 -3.15 16 29 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.37 15.67 5.66 -92.71 -0.52 15.14 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.42 7.46 8.33 -92.71 -0.77 6.68 16 38 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.22 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.21 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -76.04 360.79 2.92 -73.13 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.29 Total: 25.91 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 5.21 Total: 0.99 kcal Atomic # 7 Polarization: -121.98 SS G_CDS: -5.41 Total: -127.39 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.07 Total: -18.06 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 1.57 Total: -1.41 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.84 kcal Total: -76.04 2.92 -73.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981117841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.602 kcal (2) G-P(sol) polarization free energy of solvation -76.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds