Wall clock time and date at job start Tue Mar 31 2020 15:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86799 * 119.99974 * 2 1 4 4 H 1.48498 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47148 * 300.00086 * 3 2 1 6 6 H 1.48507 * 109.47304 * 60.00119 * 3 2 1 7 7 C 1.39931 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99915 * 162.34252 * 7 2 1 9 9 C 1.41322 * 119.99842 * 342.07079 * 7 2 1 10 10 C 1.40792 * 120.20622 * 335.34411 * 9 7 2 11 11 C 1.37611 * 120.01504 * 179.78625 * 10 9 7 12 12 C 1.38522 * 120.45350 * 0.47322 * 11 10 9 13 13 C 1.39545 * 120.41781 * 359.77953 * 12 11 10 14 14 C 1.48385 * 120.01358 * 179.97438 * 13 12 11 15 15 C 1.39712 * 120.83425 * 129.74947 * 14 13 12 16 16 N 1.32142 * 119.04541 * 179.74040 * 15 14 13 17 17 C 1.32528 * 120.86199 * 0.52291 * 16 15 14 18 18 N 1.38379 * 119.06884 * 179.73004 * 17 16 15 19 19 C 1.46960 * 110.99570 * 236.21958 * 18 17 16 20 20 C 1.53052 * 109.36590 * 183.19065 * 19 18 17 21 21 N 1.46957 * 109.36033 * 301.59863 * 20 19 18 22 22 C 1.46960 * 110.88167 * 59.32069 * 21 20 19 23 23 C 1.46953 * 111.00181 * 0.02562 * 18 17 16 24 24 N 1.32516 * 121.85454 * 359.74997 * 17 16 15 25 25 C 1.32140 * 120.86796 * 359.97437 * 24 17 16 26 26 C 1.39109 * 119.96851 * 359.97438 * 13 12 11 27 27 F 1.35101 * 120.21783 * 180.02562 * 26 13 12 28 28 H 0.96994 * 119.99920 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99043 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.77679 * 180.20934 * 11 10 9 31 31 H 1.08000 * 119.79050 * 179.75981 * 12 11 10 32 32 H 1.07996 * 120.48212 * 359.97420 * 15 14 13 33 33 H 1.09002 * 109.49074 * 303.15482 * 19 18 17 34 34 H 1.08996 * 109.48999 * 63.21939 * 19 18 17 35 35 H 1.08993 * 109.49355 * 181.63261 * 20 19 18 36 36 H 1.09002 * 109.49019 * 61.56394 * 20 19 18 37 37 H 1.00909 * 110.99589 * 183.18494 * 21 20 19 38 38 H 1.09006 * 109.48842 * 180.70758 * 22 21 20 39 39 H 1.09004 * 109.48790 * 60.64503 * 22 21 20 40 40 H 1.08999 * 109.49447 * 296.77959 * 23 18 17 41 41 H 1.09000 * 109.48799 * 56.85329 * 23 18 17 42 42 H 1.07995 * 120.48055 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8838 2.3965 1.2126 7 6 2.0082 -1.2118 0.0005 8 1 3.0500 -1.2340 -0.2831 9 6 1.3530 -2.4058 0.3778 10 6 0.2255 -2.3595 1.2198 11 6 -0.4120 -3.5242 1.5812 12 6 0.0533 -4.7484 1.1299 13 6 1.1723 -4.8163 0.2990 14 6 1.6633 -6.1325 -0.1787 15 6 1.9181 -6.3526 -1.5347 16 7 2.3595 -7.5369 -1.9205 17 6 2.5506 -8.5105 -1.0419 18 7 3.0086 -9.7379 -1.4875 19 6 2.0925 -10.8169 -1.0923 20 6 2.6731 -12.1626 -1.5334 21 7 2.8739 -12.1529 -2.9891 22 6 3.7900 -11.0739 -3.3843 23 6 3.2097 -9.7282 -2.9432 24 7 2.3150 -8.3418 0.2512 25 6 1.8772 -7.1846 0.7152 26 6 1.8271 -3.6494 -0.0813 27 9 2.9107 -3.7092 -0.8861 28 1 -0.4850 0.8400 0.0004 29 1 -0.1408 -1.4094 1.5797 30 1 -1.2786 -3.4840 2.2245 31 1 -0.4531 -5.6562 1.4233 32 1 1.7602 -5.5652 -2.2567 33 1 1.9698 -10.8113 -0.0092 34 1 1.1243 -10.6647 -1.5691 35 1 1.9816 -12.9619 -1.2670 36 1 3.6287 -12.3271 -1.0355 37 1 3.2079 -13.0480 -3.3140 38 1 3.9128 -11.0796 -4.4674 39 1 4.7584 -11.2261 -2.9075 40 1 2.2542 -9.5636 -3.4412 41 1 3.9014 -8.9290 -3.2094 42 1 1.6868 -7.0542 1.7703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241897708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:35 Heat of formation + Delta-G solvation = 41.920755 kcal Electronic energy + Delta-G solvation = -26877.858050 eV Core-core repulsion = 22965.248023 eV Total energy + Delta-G solvation = -3912.610027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -47.41074 -41.03726 -38.89837 -37.41173 -34.97256 -33.94242 -33.55287 -31.69841 -31.11844 -29.77632 -28.25115 -26.01929 -25.55008 -24.72223 -23.12294 -22.93873 -20.98528 -20.64344 -20.07227 -18.06703 -17.53439 -17.23431 -16.33717 -16.14683 -15.45090 -15.29536 -15.10335 -14.91298 -14.65286 -14.46434 -14.25275 -14.13768 -13.93935 -13.44506 -13.30094 -13.17848 -12.96395 -12.40856 -12.01957 -11.83685 -11.59040 -11.47825 -11.30606 -11.25676 -11.23612 -10.97412 -10.88287 -10.61611 -10.53572 -10.08840 -9.93541 -9.70837 -9.36918 -8.93559 -8.80175 -8.42999 -7.62921 -7.31292 -6.96639 -4.56302 1.08875 1.38578 2.52793 2.57438 2.99025 3.02586 3.06249 3.19316 3.80509 3.89381 4.00005 4.31986 4.39234 4.61078 4.85844 4.90258 4.96003 4.98928 5.10705 5.20066 5.24813 5.28720 5.35928 5.51971 5.54995 5.70729 5.72574 5.79441 5.89295 6.07472 6.16952 6.33103 6.43362 6.50603 6.71258 6.72488 6.88270 6.91914 7.00681 7.01940 7.24500 7.40774 7.43280 7.73948 7.80898 7.91659 8.34822 8.36528 8.58053 8.65576 9.96824 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.002587 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.719688 B =10818.977035 C =11502.115334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.451 4.451 8 H 0.084 0.916 9 C 0.087 3.913 10 C -0.139 4.139 11 C -0.109 4.109 12 C -0.201 4.201 13 C -0.058 4.058 14 C -0.142 4.142 15 C 0.183 3.817 16 N -0.548 5.548 17 C 0.469 3.531 18 N -0.463 5.463 19 C 0.069 3.931 20 C 0.059 3.941 21 N -0.693 5.693 22 C 0.056 3.944 23 C 0.072 3.928 24 N -0.530 5.530 25 C 0.175 3.825 26 C -0.010 4.010 27 F -0.158 7.158 28 H 0.284 0.716 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.169 0.831 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.345 0.655 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -15.433 -2.082 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.083 3.917 10 C -0.159 4.159 11 C -0.127 4.127 12 C -0.221 4.221 13 C -0.060 4.060 14 C -0.147 4.147 15 C 0.017 3.983 16 N -0.266 5.266 17 C 0.114 3.886 18 N -0.183 5.183 19 C -0.058 4.058 20 C -0.071 4.071 21 N -0.325 5.325 22 C -0.074 4.074 23 C -0.056 4.056 24 N -0.247 5.247 25 C 0.008 3.992 26 C -0.031 4.031 27 F -0.137 7.137 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.186 0.814 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.162 0.838 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.290 -15.966 -2.387 16.305 hybrid contribution 0.419 1.511 0.131 1.574 sum 2.709 -14.454 -2.256 14.878 Atomic orbital electron populations 1.69808 1.07652 1.29705 1.33892 1.25929 0.94786 1.01599 0.91961 0.86178 0.81108 0.80341 0.78759 1.18177 1.19740 1.19462 1.19562 0.98457 0.90882 1.39031 0.89752 1.17551 0.92642 0.90593 0.90880 1.21276 0.97930 0.97505 0.99182 1.20655 0.99128 0.92732 1.00216 1.20205 0.99327 0.96876 1.05691 1.17928 0.97980 0.88287 1.01815 1.20517 1.02712 0.96231 0.95230 1.23241 0.88394 0.92462 0.94240 1.68259 1.17555 1.02384 1.38422 1.20867 0.90813 0.90821 0.86135 1.58625 1.44021 1.00452 1.15230 1.22242 0.93093 0.88489 1.02002 1.22025 1.00384 0.96740 0.87912 1.60529 1.51094 1.07825 1.13064 1.22100 0.93888 0.90774 1.00589 1.22079 1.02161 0.97093 0.84241 1.67880 1.16677 1.25697 1.14444 1.23201 0.89579 0.86050 1.00344 1.17799 0.90548 0.93644 1.01084 1.91284 1.53353 1.97166 1.71902 0.90482 0.85527 0.88339 0.88321 0.81404 0.88491 0.93217 0.89667 0.93863 0.83752 0.89632 0.94145 0.92141 0.89041 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.02 10.97 55.55 0.61 -18.41 16 2 C 0.08 1.82 5.13 -17.34 -0.09 1.73 16 3 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.45 -11.53 8.78 -37.78 -0.33 -11.86 16 8 H 0.08 2.16 7.73 -52.49 -0.41 1.75 16 9 C 0.09 2.19 5.57 -106.80 -0.60 1.60 16 10 C -0.14 -3.32 8.69 -38.85 -0.34 -3.65 16 11 C -0.11 -2.28 10.01 -39.71 -0.40 -2.67 16 12 C -0.20 -4.03 9.54 -38.99 -0.37 -4.40 16 13 C -0.06 -1.22 5.51 -104.91 -0.58 -1.80 16 14 C -0.14 -2.66 5.32 -104.62 -0.56 -3.22 16 15 C 0.18 3.37 10.18 -16.87 -0.17 3.20 16 16 N -0.55 -9.66 8.66 -13.67 -0.12 -9.78 16 17 C 0.47 7.95 7.17 -322.77 -2.31 5.64 16 18 N -0.46 -6.60 4.77 -175.23 -0.84 -7.44 16 19 C 0.07 0.82 5.46 -3.76 -0.02 0.80 16 20 C 0.06 0.54 6.72 -3.77 -0.03 0.51 16 21 N -0.69 -6.14 6.90 -113.63 -0.78 -6.92 16 22 C 0.06 0.53 6.72 -3.77 -0.03 0.50 16 23 C 0.07 0.90 4.76 -3.77 -0.02 0.88 16 24 N -0.53 -9.04 9.69 -13.67 -0.13 -9.18 16 25 C 0.18 2.97 10.83 -16.87 -0.18 2.79 16 26 C -0.01 -0.25 7.19 -38.30 -0.28 -0.52 16 27 F -0.16 -3.79 15.42 2.25 0.03 -3.76 16 28 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 29 H 0.13 3.08 6.16 -52.49 -0.32 2.76 16 30 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.10 1.72 8.05 -52.49 -0.42 1.30 16 32 H 0.17 3.01 7.87 -52.49 -0.41 2.60 16 33 H 0.10 1.18 7.64 -51.93 -0.40 0.78 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.34 2.23 8.90 -39.29 -0.35 1.88 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.83 8.03 -51.93 -0.42 0.41 16 41 H 0.09 1.21 7.80 -51.93 -0.40 0.81 16 42 H 0.17 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -27.49 352.21 -12.47 -39.95 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.23 Total: 7.85 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -6.29 Total: -10.48 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -1.26 Total: -51.72 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.03 Total: -3.76 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.49 -12.47 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241897708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.874 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds