Wall clock time and date at job start Tue Mar 31 2020 15:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86799 * 119.99974 * 2 1 4 4 H 1.48498 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47148 * 300.00086 * 3 2 1 6 6 H 1.48507 * 109.47304 * 60.00119 * 3 2 1 7 7 C 1.39931 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99915 * 162.34252 * 7 2 1 9 9 C 1.41322 * 119.99842 * 342.07079 * 7 2 1 10 10 C 1.40792 * 120.20622 * 335.34411 * 9 7 2 11 11 C 1.37611 * 120.01504 * 179.78625 * 10 9 7 12 12 C 1.38522 * 120.45350 * 0.47322 * 11 10 9 13 13 C 1.39545 * 120.41781 * 359.77953 * 12 11 10 14 14 C 1.48385 * 120.01358 * 179.97438 * 13 12 11 15 15 C 1.39712 * 120.83425 * 129.74947 * 14 13 12 16 16 N 1.32142 * 119.04541 * 179.74040 * 15 14 13 17 17 C 1.32528 * 120.86199 * 0.52291 * 16 15 14 18 18 N 1.38379 * 119.06884 * 179.73004 * 17 16 15 19 19 C 1.46960 * 110.99570 * 236.21958 * 18 17 16 20 20 C 1.53052 * 109.36590 * 183.19065 * 19 18 17 21 21 N 1.46957 * 109.36033 * 301.59863 * 20 19 18 22 22 C 1.46960 * 110.88167 * 59.32069 * 21 20 19 23 23 C 1.46953 * 111.00181 * 0.02562 * 18 17 16 24 24 N 1.32516 * 121.85454 * 359.74997 * 17 16 15 25 25 C 1.32140 * 120.86796 * 359.97437 * 24 17 16 26 26 C 1.39109 * 119.96851 * 359.97438 * 13 12 11 27 27 F 1.35101 * 120.21783 * 180.02562 * 26 13 12 28 28 H 0.96994 * 119.99920 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99043 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.77679 * 180.20934 * 11 10 9 31 31 H 1.08000 * 119.79050 * 179.75981 * 12 11 10 32 32 H 1.07996 * 120.48212 * 359.97420 * 15 14 13 33 33 H 1.09002 * 109.49074 * 303.15482 * 19 18 17 34 34 H 1.08996 * 109.48999 * 63.21939 * 19 18 17 35 35 H 1.08993 * 109.49355 * 181.63261 * 20 19 18 36 36 H 1.09002 * 109.49019 * 61.56394 * 20 19 18 37 37 H 1.00909 * 110.99589 * 183.18494 * 21 20 19 38 38 H 1.09006 * 109.48842 * 180.70758 * 22 21 20 39 39 H 1.09004 * 109.48790 * 60.64503 * 22 21 20 40 40 H 1.08999 * 109.49447 * 296.77959 * 23 18 17 41 41 H 1.09000 * 109.48799 * 56.85329 * 23 18 17 42 42 H 1.07995 * 120.48055 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8838 2.3965 1.2126 7 6 2.0082 -1.2118 0.0005 8 1 3.0500 -1.2340 -0.2831 9 6 1.3530 -2.4058 0.3778 10 6 0.2255 -2.3595 1.2198 11 6 -0.4120 -3.5242 1.5812 12 6 0.0533 -4.7484 1.1299 13 6 1.1723 -4.8163 0.2990 14 6 1.6633 -6.1325 -0.1787 15 6 1.9181 -6.3526 -1.5347 16 7 2.3595 -7.5369 -1.9205 17 6 2.5506 -8.5105 -1.0419 18 7 3.0086 -9.7379 -1.4875 19 6 2.0925 -10.8169 -1.0923 20 6 2.6731 -12.1626 -1.5334 21 7 2.8739 -12.1529 -2.9891 22 6 3.7900 -11.0739 -3.3843 23 6 3.2097 -9.7282 -2.9432 24 7 2.3150 -8.3418 0.2512 25 6 1.8772 -7.1846 0.7152 26 6 1.8271 -3.6494 -0.0813 27 9 2.9107 -3.7092 -0.8861 28 1 -0.4850 0.8400 0.0004 29 1 -0.1408 -1.4094 1.5797 30 1 -1.2786 -3.4840 2.2245 31 1 -0.4531 -5.6562 1.4233 32 1 1.7602 -5.5652 -2.2567 33 1 1.9698 -10.8113 -0.0092 34 1 1.1243 -10.6647 -1.5691 35 1 1.9816 -12.9619 -1.2670 36 1 3.6287 -12.3271 -1.0355 37 1 3.2079 -13.0480 -3.3140 38 1 3.9128 -11.0796 -4.4674 39 1 4.7584 -11.2261 -2.9075 40 1 2.2542 -9.5636 -3.4412 41 1 3.9014 -8.9290 -3.2094 42 1 1.6868 -7.0542 1.7703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241897708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:34 Heat of formation + Delta-G solvation = 26.850333 kcal Electronic energy + Delta-G solvation = -26878.511552 eV Core-core repulsion = 22965.248023 eV Total energy + Delta-G solvation = -3913.263529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.25878 -42.34259 -39.98150 -39.06630 -36.20541 -35.46839 -34.91390 -33.18421 -31.99973 -31.53208 -29.72429 -27.38220 -27.09181 -25.98611 -24.32406 -24.11337 -22.67157 -22.28631 -21.01901 -19.31993 -19.14901 -18.61188 -17.97204 -17.24186 -17.10874 -16.72533 -16.52882 -16.19597 -16.00108 -15.74870 -15.57479 -15.30421 -15.07331 -14.97251 -14.67145 -14.58658 -14.36689 -13.80096 -13.54136 -13.28121 -13.27254 -12.86006 -12.63696 -12.51905 -12.32951 -12.22719 -12.14553 -12.11252 -11.89267 -11.73426 -11.45779 -11.34403 -11.05064 -10.30609 -9.85510 -9.48473 -9.39423 -8.93852 -8.72869 -6.44287 -0.33199 0.00133 0.80051 0.87820 1.37000 1.45590 1.51560 2.02388 2.17757 2.55851 2.67698 3.02232 3.21632 3.47488 3.54376 3.58816 3.73456 3.86279 3.93207 4.00729 4.12806 4.14713 4.24398 4.32974 4.50288 4.52375 4.70840 4.77035 4.79183 4.83656 4.86498 4.94937 4.95466 5.11947 5.17703 5.25261 5.48617 5.50606 5.62473 5.68794 5.91052 5.97377 5.99458 6.04417 6.15952 6.45766 6.53243 6.75127 6.84131 6.99234 8.22952 Molecular weight = 328.14amu Principal moments of inertia in cm(-1) A = 0.027945 B = 0.002587 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.719688 B =10818.977035 C =11502.115334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.042 3.958 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.493 4.493 8 H 0.067 0.933 9 C 0.058 3.942 10 C -0.159 4.159 11 C -0.104 4.104 12 C -0.188 4.188 13 C -0.048 4.048 14 C -0.163 4.163 15 C 0.179 3.821 16 N -0.556 5.556 17 C 0.467 3.533 18 N -0.465 5.465 19 C 0.068 3.932 20 C 0.065 3.935 21 N -0.698 5.698 22 C 0.064 3.936 23 C 0.072 3.928 24 N -0.534 5.534 25 C 0.189 3.811 26 C -0.041 4.041 27 F -0.168 7.168 28 H 0.294 0.706 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.163 0.837 33 H 0.095 0.905 34 H 0.039 0.961 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.362 0.638 38 H 0.105 0.895 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -17.620 -1.524 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.175 4.175 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.521 4.521 8 H 0.086 0.914 9 C 0.055 3.945 10 C -0.179 4.179 11 C -0.122 4.122 12 C -0.207 4.207 13 C -0.050 4.050 14 C -0.169 4.169 15 C 0.013 3.987 16 N -0.275 5.275 17 C 0.112 3.888 18 N -0.186 5.186 19 C -0.058 4.058 20 C -0.064 4.064 21 N -0.332 5.332 22 C -0.066 4.066 23 C -0.056 4.056 24 N -0.251 5.251 25 C 0.021 3.979 26 C -0.061 4.061 27 F -0.147 7.147 28 H 0.105 0.895 29 H 0.133 0.867 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.180 0.820 33 H 0.114 0.886 34 H 0.058 0.942 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.182 0.818 38 H 0.123 0.877 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.928 -18.202 -1.844 18.396 hybrid contribution 0.507 1.955 -0.055 2.021 sum 2.435 -16.247 -1.899 16.538 Atomic orbital electron populations 1.69821 1.08668 1.31039 1.34283 1.26651 0.95561 1.04199 0.91069 0.85178 0.79153 0.76184 0.79388 1.18909 1.18839 1.18055 1.19659 0.98129 0.92554 1.41789 0.91438 1.17888 0.93665 0.91223 0.91675 1.21276 0.98334 0.98274 0.99998 1.21009 0.99440 0.92008 0.99731 1.20638 0.98241 0.97922 1.03895 1.18110 0.97563 0.88401 1.00932 1.20397 1.04914 0.95862 0.95693 1.23221 0.88389 0.92749 0.94367 1.68318 1.18201 1.02336 1.38683 1.21367 0.89597 0.91627 0.86241 1.58772 1.43835 0.99847 1.16148 1.22352 0.92429 0.89138 1.01909 1.22018 1.00927 0.95420 0.88054 1.60489 1.51112 1.08613 1.12958 1.22039 0.93643 0.89164 1.01730 1.22126 1.01359 0.98918 0.83167 1.68010 1.17136 1.25552 1.14386 1.23573 0.87941 0.85180 1.01172 1.18099 0.91202 0.94558 1.02242 1.91241 1.53887 1.97235 1.72318 0.89549 0.86707 0.85085 0.84686 0.81981 0.88643 0.94220 0.87260 0.93585 0.81772 0.87699 0.93884 0.93469 0.90255 0.78555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.29 10.97 21.83 0.24 -40.05 16 2 C 0.04 2.04 5.13 85.25 0.44 2.48 16 3 Si 0.98 37.47 29.59 68.60 2.03 39.50 16 4 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.49 -26.52 8.78 23.44 0.21 -26.31 16 8 H 0.07 3.70 7.73 -2.91 -0.02 3.68 16 9 C 0.06 3.08 5.57 -21.27 -0.12 2.96 16 10 C -0.16 -7.71 8.69 22.75 0.20 -7.51 16 11 C -0.10 -4.19 10.01 22.19 0.22 -3.97 16 12 C -0.19 -7.12 9.54 22.65 0.22 -6.90 16 13 C -0.05 -2.00 5.51 -20.05 -0.11 -2.11 16 14 C -0.16 -6.02 5.32 -19.86 -0.11 -6.13 16 15 C 0.18 6.66 10.18 85.00 0.87 7.53 16 16 N -0.56 -19.64 8.66 -197.17 -1.71 -21.35 16 17 C 0.47 15.43 7.17 261.47 1.87 17.31 16 18 N -0.47 -12.73 4.77 -708.30 -3.38 -16.10 16 19 C 0.07 1.50 5.46 86.31 0.47 1.97 16 20 C 0.07 1.00 6.72 86.31 0.58 1.58 16 21 N -0.70 -10.38 6.90 -513.42 -3.54 -13.92 16 22 C 0.06 1.07 6.72 86.31 0.58 1.65 16 23 C 0.07 1.74 4.76 86.31 0.41 2.15 16 24 N -0.53 -17.36 9.69 -197.17 -1.91 -19.27 16 25 C 0.19 6.05 10.83 85.00 0.92 6.97 16 26 C -0.04 -2.01 7.19 23.10 0.17 -1.85 16 27 F -0.17 -8.47 15.42 44.97 0.69 -7.77 16 28 H 0.29 12.96 8.30 -92.71 -0.77 12.19 16 29 H 0.12 5.75 6.16 -2.91 -0.02 5.73 16 30 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.14 4.16 8.05 -2.91 -0.02 4.14 16 32 H 0.16 6.08 7.87 -2.91 -0.02 6.05 16 33 H 0.10 2.13 7.64 -2.39 -0.02 2.11 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.36 3.47 8.90 -89.69 -0.80 2.67 16 38 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.05 1.27 8.03 -2.39 -0.02 1.25 16 41 H 0.08 2.09 7.80 -2.39 -0.02 2.07 16 42 H 0.20 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -61.47 352.21 -0.50 -61.97 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.27 Total: 27.21 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 6.81 Total: -10.19 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -10.30 Total: -110.70 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 0.69 Total: -7.77 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -61.47 -0.50 -61.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241897708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.819 kcal (2) G-P(sol) polarization free energy of solvation -61.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds