Wall clock time and date at job start Tue Mar 31 2020 14:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.00253 * 2 1 4 4 C 1.54321 * 109.88204 * 121.09817 * 2 1 3 5 5 H 1.09001 * 110.72487 * 215.76308 * 4 2 1 6 6 N 1.46501 * 110.72208 * 338.86111 * 4 2 1 7 7 C 1.36936 * 120.00356 * 202.56236 * 6 4 2 8 8 H 1.07999 * 119.99597 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00199 * 179.97438 * 7 6 4 10 10 N 1.31623 * 119.99771 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99889 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46994 * 179.97438 * 11 9 7 13 13 H 1.48496 * 109.47019 * 299.99573 * 11 9 7 14 14 H 1.48492 * 109.47217 * 59.99696 * 11 9 7 15 15 C 1.55164 * 103.10450 * 97.30987 * 4 2 1 16 16 C 1.55128 * 101.48267 * 35.28412 * 15 4 2 17 17 N 1.47025 * 109.88272 * 238.90588 * 2 1 3 18 18 C 1.34770 * 125.64936 * 59.55629 * 17 2 1 19 19 O 1.21627 * 120.00039 * 354.52010 * 18 17 2 20 20 C 1.47167 * 120.00127 * 174.51459 * 18 17 2 21 21 C 1.38406 * 126.87971 * 353.22276 * 20 18 17 22 22 C 1.39682 * 105.35407 * 179.97438 * 21 20 18 23 23 C 1.50703 * 126.06663 * 180.11224 * 22 21 20 24 24 F 1.39902 * 109.46830 * 300.26182 * 23 22 21 25 25 F 1.39900 * 109.47028 * 60.26328 * 23 22 21 26 26 N 1.30864 * 107.86420 * 0.35479 * 22 21 20 27 27 N 1.28450 * 110.92203 * 359.77590 * 26 22 21 28 28 C 1.46501 * 125.18530 * 179.97438 * 27 26 22 29 29 H 1.09000 * 109.47188 * 298.90127 * 1 2 3 30 30 H 1.09003 * 109.47229 * 58.90331 * 1 2 3 31 31 H 1.09004 * 109.47423 * 178.90005 * 1 2 3 32 32 H 0.97003 * 119.99565 * 22.55834 * 6 4 2 33 33 H 0.96995 * 119.99873 * 180.02562 * 10 9 7 34 34 H 1.08997 * 111.00291 * 153.48334 * 15 4 2 35 35 H 1.09000 * 111.00454 * 277.34163 * 15 4 2 36 36 H 1.08991 * 110.41954 * 204.29229 * 16 15 4 37 37 H 1.09003 * 110.20597 * 82.03873 * 16 15 4 38 38 H 1.07995 * 127.32396 * 0.02562 * 21 20 18 39 39 H 1.08996 * 109.46885 * 180.26567 * 23 22 21 40 40 H 1.09001 * 109.47136 * 264.48776 * 28 27 26 41 41 H 1.09004 * 109.46971 * 24.48854 * 28 27 26 42 42 H 1.09000 * 109.47148 * 144.48433 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9639 -0.2814 1.6201 6 7 1.0292 -0.8027 2.2875 7 6 1.3924 -0.9890 3.5946 8 1 2.4349 -1.0972 3.8552 9 6 0.4206 -1.0388 4.5846 10 7 -0.8498 -0.9065 4.2670 11 14 0.9161 -1.2937 6.3676 12 1 -0.2987 -1.3083 7.2216 13 1 1.6320 -2.5877 6.5023 14 1 1.8087 -0.1872 6.7963 15 6 2.3553 -2.1702 0.6957 16 6 2.8568 -1.8499 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7753 -0.3845 -2.4657 19 8 0.9979 0.5159 -2.7191 20 6 2.4379 -1.1140 -3.5587 21 6 3.4362 -2.0650 -3.4372 22 6 3.7318 -2.4598 -4.7440 23 6 4.7583 -3.4858 -5.1501 24 9 6.0219 -3.0827 -4.7051 25 9 4.4346 -4.7209 -4.5783 26 7 2.9630 -1.7770 -5.5534 27 7 2.1962 -0.9828 -4.8966 28 6 1.2128 -0.0746 -5.4919 29 1 -0.3633 0.4967 0.8997 30 1 -0.3634 0.5308 -0.8800 31 1 -0.3634 -1.0275 -0.0197 32 1 0.0929 -0.7059 2.0533 33 1 -1.5288 -0.9409 4.9588 34 1 3.1315 -2.6592 1.2842 35 1 1.4500 -2.7766 0.6650 36 1 2.7087 -2.7080 -1.3923 37 1 3.9091 -1.5668 -0.7129 38 1 3.8894 -2.4257 -2.5257 39 1 4.7683 -3.5796 -6.2359 40 1 1.6546 0.9153 -5.6057 41 1 0.9133 -0.4534 -6.4691 42 1 0.3388 -0.0101 -4.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986554607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:57 Heat of formation + Delta-G solvation = -20.909723 kcal Electronic energy + Delta-G solvation = -28491.391331 eV Core-core repulsion = 24145.287546 eV Total energy + Delta-G solvation = -4346.103785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.23523 -47.24782 -42.97924 -39.99812 -37.60397 -34.57255 -33.90508 -32.30990 -31.06417 -30.64885 -29.03370 -28.80206 -25.76813 -25.21855 -24.27183 -23.36349 -22.00381 -21.46344 -19.81859 -18.99496 -17.77925 -17.58817 -17.57327 -17.27775 -16.58184 -16.47477 -16.39327 -15.59732 -15.19293 -14.65135 -14.28366 -14.16338 -14.12171 -13.70271 -13.61423 -13.44791 -13.22566 -13.12304 -12.99520 -12.77300 -12.54467 -12.21145 -11.90359 -11.78254 -11.55755 -11.31477 -11.11461 -11.00809 -10.81039 -10.53820 -10.32493 -10.09399 -9.94948 -9.69650 -9.65097 -9.40924 -8.99048 -8.59269 -7.08078 -5.85921 -3.16242 0.98186 1.87274 1.90315 2.88199 3.05001 3.36667 3.39475 3.44502 3.45207 3.83201 4.06700 4.33253 4.51325 4.53148 4.75025 4.86556 4.89839 4.93671 5.08472 5.11081 5.20274 5.27992 5.34796 5.44533 5.53220 5.56199 5.70117 5.86872 5.93550 6.04162 6.14099 6.22955 6.24562 6.45921 6.50081 6.60177 6.73891 6.90544 7.44408 7.53125 7.62054 8.02022 8.32353 9.44152 9.97906 10.32830 11.36361 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.002978 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.328072 B = 9400.447278 C =10597.629550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.076 0.924 4 C 0.174 3.826 5 H 0.067 0.933 6 N -0.716 5.716 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.291 1.291 13 H -0.285 1.285 14 H -0.285 1.285 15 C -0.154 4.154 16 C 0.084 3.916 17 N -0.589 5.589 18 C 0.601 3.399 19 O -0.540 6.540 20 C -0.021 4.021 21 C -0.162 4.162 22 C -0.062 4.062 23 C 0.364 3.636 24 F -0.192 7.192 25 F -0.191 7.191 26 N -0.244 5.244 27 N -0.246 5.246 28 C 0.087 3.913 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.391 0.609 33 H 0.257 0.743 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.178 0.822 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 -2.491 -20.801 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 H 0.094 0.906 4 C 0.061 3.939 5 H 0.085 0.915 6 N -0.359 5.359 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.195 4.195 16 C -0.039 4.039 17 N -0.321 5.321 18 C 0.388 3.612 19 O -0.419 6.419 20 C -0.148 4.148 21 C -0.190 4.190 22 C -0.219 4.219 23 C 0.309 3.691 24 F -0.173 7.173 25 F -0.172 7.172 26 N -0.080 5.080 27 N -0.034 5.034 28 C -0.052 4.052 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.195 0.805 39 H 0.144 0.856 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.059 -1.743 -21.947 23.445 hybrid contribution 0.195 -0.348 1.788 1.832 sum 8.254 -2.091 -20.160 21.884 Atomic orbital electron populations 1.22037 0.94189 1.02610 1.02985 1.21971 0.95706 0.95740 0.83798 0.90594 1.21197 0.93364 0.92045 0.87249 0.91527 1.42661 1.04710 1.86306 1.02266 1.19199 0.92782 1.42426 0.83428 0.91027 1.24759 0.95242 1.02379 0.98163 1.69646 0.99091 1.56463 1.32648 0.86241 0.77049 0.78032 0.84678 1.21687 1.21164 1.21177 1.23637 1.01963 1.01382 0.92528 1.22883 0.94735 0.88540 0.97743 1.48222 1.49478 1.30246 1.04176 1.16337 0.81341 0.82748 0.80776 1.90782 1.36135 1.31802 1.83177 1.21480 1.03191 1.04109 0.86056 1.22596 0.99009 0.98633 0.98719 1.22224 1.03302 1.04077 0.92276 1.19084 0.76435 0.76703 0.96894 1.93037 1.41657 1.90758 1.91842 1.93042 1.92668 1.43821 1.87687 1.72968 1.04909 1.04808 1.25289 1.45621 1.26842 1.27777 1.03182 1.22420 0.90558 0.91740 1.00511 0.89926 0.91899 0.92452 0.77076 0.93274 0.90146 0.90501 0.90249 0.90923 0.80497 0.85561 0.89101 0.88462 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 7.93 37.16 0.29 -2.56 16 2 C 0.13 2.19 3.51 -66.95 -0.24 1.95 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.17 3.16 3.46 -66.09 -0.23 2.93 16 5 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 6 N -0.72 -16.70 4.98 -51.65 -0.26 -16.95 16 7 C -0.25 -6.47 9.97 -15.06 -0.15 -6.62 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 11 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 15 C -0.15 -2.39 6.79 -24.46 -0.17 -2.56 16 16 C 0.08 1.06 5.13 -2.41 -0.01 1.05 16 17 N -0.59 -8.69 3.08 -164.23 -0.51 -9.20 16 18 C 0.60 9.02 7.63 -12.64 -0.10 8.93 16 19 O -0.54 -9.04 13.65 5.25 0.07 -8.97 16 20 C -0.02 -0.27 6.89 -82.06 -0.57 -0.84 16 21 C -0.16 -1.93 9.21 -38.98 -0.36 -2.29 16 22 C -0.06 -0.71 6.65 -82.46 -0.55 -1.26 16 23 C 0.36 3.28 5.80 36.01 0.21 3.49 16 24 F -0.19 -1.94 17.32 2.25 0.04 -1.90 16 25 F -0.19 -1.96 17.32 2.25 0.04 -1.92 16 26 N -0.24 -2.87 11.90 33.64 0.40 -2.47 16 27 N -0.25 -2.93 3.75 -63.88 -0.24 -3.17 16 28 C 0.09 0.76 10.58 59.85 0.63 1.39 16 29 H 0.08 1.62 6.72 -51.93 -0.35 1.27 16 30 H 0.06 1.10 6.61 -51.93 -0.34 0.76 16 31 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 32 H 0.39 9.67 4.99 -40.82 -0.20 9.46 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 0.91 5.92 -51.93 -0.31 0.60 16 37 H 0.07 0.79 7.78 -51.93 -0.40 0.38 16 38 H 0.18 1.84 4.99 -52.49 -0.26 1.58 16 39 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.11 1.06 6.80 -51.93 -0.35 0.70 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -31.19 349.96 -5.94 -37.13 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.14 Total: 8.68 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.32 Total: 3.29 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.12 Total: -58.12 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.08 Total: -3.82 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.19 -5.94 -37.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986554607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.221 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds