Wall clock time and date at job start Tue Mar 31 2020 16:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99710 * 2 1 4 4 O 1.21600 * 119.99976 * 175.67761 * 3 2 1 5 5 C 1.47434 * 119.99889 * 355.67471 * 3 2 1 6 6 C 1.41288 * 126.41404 * 35.27288 * 5 3 2 7 7 N 1.30445 * 108.01934 * 179.85080 * 6 5 3 8 8 N 1.39931 * 108.90240 * 0.41342 * 7 6 5 9 9 C 1.46496 * 125.76023 * 179.73047 * 8 7 6 10 10 C 1.34268 * 108.48789 * 359.73411 * 8 7 6 11 11 C 1.50702 * 126.28993 * 179.97438 * 10 8 7 12 12 F 1.39903 * 109.46944 * 120.02412 * 11 10 8 13 13 F 1.39898 * 109.46778 * 240.02005 * 11 10 8 14 14 C 1.46502 * 120.00233 * 179.97438 * 2 1 3 15 15 H 1.09000 * 110.88267 * 183.88186 * 14 2 1 16 16 C 1.55154 * 111.00383 * 60.00197 * 14 2 1 17 17 C 1.54330 * 102.94163 * 206.42520 * 16 14 2 18 18 N 1.47027 * 107.26803 * 22.18742 * 17 16 14 19 19 C 1.36934 * 125.64538 * 181.02248 * 18 17 16 20 20 H 1.07994 * 120.00253 * 185.05870 * 19 18 17 21 21 C 1.38814 * 119.99929 * 5.05960 * 19 18 17 22 22 N 1.31617 * 120.00236 * 5.08572 * 21 19 18 23 23 Si 1.86802 * 119.99800 * 184.80921 * 21 19 18 24 24 H 1.48503 * 109.47050 * 265.27561 * 23 21 19 25 25 H 1.48495 * 109.47143 * 25.27638 * 23 21 19 26 26 H 1.48502 * 109.46910 * 145.28067 * 23 21 19 27 27 C 1.47423 * 108.70401 * 1.29289 * 18 17 16 28 28 H 1.08997 * 109.47067 * 275.42140 * 1 2 3 29 29 H 1.08998 * 109.47462 * 35.42631 * 1 2 3 30 30 H 1.09008 * 109.46522 * 155.42893 * 1 2 3 31 31 H 1.08004 * 125.98889 * 0.02562 * 6 5 3 32 32 H 1.09000 * 109.47445 * 270.00028 * 9 8 7 33 33 H 1.09001 * 109.47042 * 30.00137 * 9 8 7 34 34 H 1.08999 * 109.47134 * 149.99756 * 9 8 7 35 35 H 1.08993 * 109.47203 * 0.02562 * 11 10 8 36 36 H 1.08992 * 110.71948 * 88.06152 * 16 14 2 37 37 H 1.09004 * 110.87149 * 324.85767 * 16 14 2 38 38 H 1.08998 * 109.87675 * 262.77612 * 17 16 14 39 39 H 1.08993 * 110.01222 * 141.68345 * 17 16 14 40 40 H 0.96996 * 120.00112 * 179.72405 * 22 21 19 41 41 H 1.08997 * 110.36728 * 94.48151 * 27 18 17 42 42 H 1.09000 * 110.36344 * 216.79845 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3523 1.1688 0.0794 5 6 1.4048 2.4422 -0.0963 6 6 0.1415 2.7274 0.4686 7 7 -0.1672 3.9581 0.1661 8 7 0.8639 4.5081 -0.6035 9 6 0.8949 5.8684 -1.1465 10 6 1.8202 3.5788 -0.7604 11 6 3.1099 3.7458 -1.5221 12 9 4.1914 3.5454 -0.6575 13 9 3.1629 2.8094 -2.5601 14 6 2.1976 -1.2687 0.0006 15 1 3.2718 -1.0971 0.0694 16 6 1.8485 -2.1130 -1.2535 17 6 2.1065 -3.5589 -0.7795 18 7 2.0267 -3.5577 0.6886 19 6 2.2164 -4.6451 1.4990 20 1 2.0559 -4.5598 2.5635 21 6 2.6150 -5.8571 0.9521 22 7 2.9075 -5.9368 -0.3287 23 14 2.7439 -7.3733 2.0357 24 1 4.1429 -7.5251 2.5102 25 1 1.8384 -7.2257 3.2033 26 1 2.3531 -8.5744 1.2548 27 6 1.7022 -2.1934 1.1433 28 1 -0.3633 0.0971 1.0230 29 1 -0.3634 0.8374 -0.5957 30 1 -0.3633 -0.9347 -0.4274 31 1 -0.4614 2.0467 1.0514 32 1 0.4404 5.8746 -2.1372 33 1 0.3391 6.5354 -0.4875 34 1 1.9284 6.2073 -1.2188 35 1 3.1587 4.7522 -1.9377 36 1 2.5045 -1.8571 -2.0854 37 1 0.8034 -1.9795 -1.5329 38 1 3.0983 -3.8814 -1.0965 39 1 1.3503 -4.2270 -1.1914 40 1 3.1899 -6.7828 -0.7099 41 1 0.6265 -2.0857 1.2823 42 1 2.2297 -1.9669 2.0698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033574607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:03 Heat of formation + Delta-G solvation = -6.290483 kcal Electronic energy + Delta-G solvation = -28887.110704 eV Core-core repulsion = 24541.640856 eV Total energy + Delta-G solvation = -4345.469848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.18997 -47.19275 -41.86874 -39.45620 -37.18439 -34.90883 -33.97280 -32.13577 -31.54734 -29.27681 -28.14634 -27.12559 -26.86583 -26.35568 -24.40729 -22.60981 -21.44096 -20.11311 -20.06517 -19.05009 -18.06012 -17.58696 -17.40754 -16.93186 -16.90786 -16.01845 -15.85230 -15.23486 -14.70569 -14.61300 -14.50820 -14.02797 -14.01673 -13.89647 -13.52134 -13.34564 -13.22859 -13.09677 -12.82112 -12.71449 -12.35390 -12.21824 -11.89636 -11.69214 -11.63876 -11.35878 -10.89756 -10.80383 -10.74171 -10.22592 -10.06315 -10.05514 -9.80634 -9.71189 -9.60687 -9.05915 -8.59950 -8.27582 -6.79813 -5.66830 -3.02931 0.91366 1.71531 1.91070 3.01823 3.15466 3.31126 3.43395 3.48487 3.50476 3.59805 3.92563 4.17911 4.49928 4.53802 4.55829 4.64490 4.72894 4.82994 4.99242 5.21677 5.24294 5.36271 5.48396 5.58220 5.67982 5.75129 5.77195 5.92524 5.96739 6.16645 6.25924 6.35864 6.56552 6.63867 6.75268 7.00603 7.04691 7.52231 7.63303 7.68689 7.86748 8.29046 8.39331 9.24113 9.84692 10.49996 11.43113 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.002908 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.946546 B = 9625.681279 C =10087.820391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.593 5.593 3 C 0.582 3.418 4 O -0.526 6.526 5 C -0.226 4.226 6 C 0.077 3.923 7 N -0.275 5.275 8 N -0.346 5.346 9 C 0.089 3.911 10 C 0.047 3.953 11 C 0.346 3.654 12 F -0.168 7.168 13 F -0.181 7.181 14 C 0.126 3.874 15 H 0.108 0.892 16 C -0.152 4.152 17 C 0.175 3.825 18 N -0.602 5.602 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.291 1.291 27 C 0.132 3.868 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.202 0.798 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.252 0.748 41 H 0.023 0.977 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 25.535 -4.440 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.325 5.325 3 C 0.369 3.631 4 O -0.402 6.402 5 C -0.242 4.242 6 C -0.108 4.108 7 N -0.095 5.095 8 N -0.126 5.126 9 C -0.052 4.052 10 C -0.085 4.085 11 C 0.291 3.709 12 F -0.149 7.149 13 F -0.162 7.162 14 C 0.023 3.977 15 H 0.126 0.874 16 C -0.191 4.191 17 C 0.050 3.950 18 N -0.329 5.329 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.207 1.207 26 H -0.217 1.217 27 C 0.004 3.996 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.219 0.781 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.622 26.344 -4.366 27.512 hybrid contribution 0.480 -1.518 0.424 1.648 sum -6.142 24.826 -3.942 25.876 Atomic orbital electron populations 1.22001 0.80190 1.03585 1.01347 1.47587 1.06761 1.05666 1.72480 1.17225 0.86611 0.82328 0.76938 1.90840 1.13051 1.86875 1.49472 1.20252 0.98342 0.95864 1.09719 1.24407 0.94374 0.93435 0.98622 1.77251 1.09431 1.10729 1.12101 1.48242 1.13307 1.11453 1.39625 1.22122 1.04467 0.78095 1.00507 1.21795 0.93583 0.90898 1.02274 1.19425 0.80453 0.92312 0.78754 1.93155 1.55040 1.96202 1.70488 1.93093 1.96414 1.68853 1.57838 1.22532 0.97517 0.80601 0.97095 0.87353 1.23225 1.00446 0.98584 0.96844 1.21203 1.01406 0.88919 0.83456 1.44389 1.83011 1.03265 1.02225 1.19050 1.39203 0.87146 0.90206 0.90409 1.24822 1.01256 0.98042 0.96299 1.69953 1.51257 1.24757 1.10784 0.86094 0.77736 0.82676 0.79217 1.21611 1.20655 1.21686 1.21805 0.97014 0.85871 0.94891 0.92410 0.91394 0.89995 0.78110 0.89531 0.87984 0.89107 0.86478 0.91853 0.92221 0.91971 0.94843 0.93749 0.95966 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 7.57 59.85 0.45 1.31 16 2 N -0.59 -9.44 2.91 -172.61 -0.50 -9.94 16 3 C 0.58 9.75 7.48 -12.51 -0.09 9.65 16 4 O -0.53 -10.68 14.55 5.28 0.08 -10.61 16 5 C -0.23 -3.03 5.42 -105.07 -0.57 -3.60 16 6 C 0.08 0.84 9.70 -16.98 -0.16 0.68 16 7 N -0.27 -2.95 12.50 30.86 0.39 -2.57 16 8 N -0.35 -3.16 3.98 -63.34 -0.25 -3.41 16 9 C 0.09 0.33 11.10 59.84 0.66 1.00 16 10 C 0.05 0.53 6.43 -81.60 -0.52 0.01 16 11 C 0.35 3.63 5.19 36.01 0.19 3.81 16 12 F -0.17 -2.33 15.76 2.25 0.04 -2.29 16 13 F -0.18 -2.37 17.32 2.25 0.04 -2.33 16 14 C 0.13 2.43 3.46 -65.67 -0.23 2.20 16 15 H 0.11 2.36 7.02 -51.93 -0.36 1.99 16 16 C -0.15 -2.95 6.49 -24.89 -0.16 -3.11 16 17 C 0.18 4.31 5.42 -3.06 -0.02 4.30 16 18 N -0.60 -15.62 3.39 -169.94 -0.58 -16.20 16 19 C -0.23 -6.43 10.27 -15.06 -0.15 -6.59 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.22 5.47 -17.43 -0.10 -0.32 16 22 N -0.92 -27.31 10.40 55.49 0.58 -26.74 16 23 Si 0.91 22.34 29.56 -169.99 -5.02 17.31 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 C 0.13 2.79 6.79 -2.41 -0.02 2.77 16 28 H 0.06 0.57 7.28 -51.93 -0.38 0.20 16 29 H 0.07 0.69 5.83 -51.93 -0.30 0.38 16 30 H 0.08 1.01 6.37 -51.92 -0.33 0.68 16 31 H 0.20 1.66 6.13 -52.48 -0.32 1.34 16 32 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.12 7.02 -51.93 -0.36 -0.24 16 35 H 0.12 0.57 6.72 -51.93 -0.35 0.22 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.04 6.48 -51.93 -0.34 0.71 16 38 H 0.06 1.72 6.97 -51.93 -0.36 1.35 16 39 H 0.03 0.89 7.88 -51.93 -0.41 0.48 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.02 0.45 6.95 -51.93 -0.36 0.09 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -36.60 345.82 -5.87 -42.47 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -5.12 Total: -3.01 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -0.72 Total: 12.10 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.37 Total: -58.86 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.07 Total: -4.62 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.60 -5.87 -42.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033574607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.177 kcal (2) G-P(sol) polarization free energy of solvation -36.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds