Wall clock time and date at job start Tue Mar 31 2020 16:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99710 * 2 1 4 4 O 1.21600 * 119.99976 * 175.67761 * 3 2 1 5 5 C 1.47434 * 119.99889 * 355.67471 * 3 2 1 6 6 C 1.41288 * 126.41404 * 35.27288 * 5 3 2 7 7 N 1.30445 * 108.01934 * 179.85080 * 6 5 3 8 8 N 1.39931 * 108.90240 * 0.41342 * 7 6 5 9 9 C 1.46496 * 125.76023 * 179.73047 * 8 7 6 10 10 C 1.34268 * 108.48789 * 359.73411 * 8 7 6 11 11 C 1.50702 * 126.28993 * 179.97438 * 10 8 7 12 12 F 1.39903 * 109.46944 * 120.02412 * 11 10 8 13 13 F 1.39898 * 109.46778 * 240.02005 * 11 10 8 14 14 C 1.46502 * 120.00233 * 179.97438 * 2 1 3 15 15 H 1.09000 * 110.88267 * 183.88186 * 14 2 1 16 16 C 1.55154 * 111.00383 * 60.00197 * 14 2 1 17 17 C 1.54330 * 102.94163 * 206.42520 * 16 14 2 18 18 N 1.47027 * 107.26803 * 22.18742 * 17 16 14 19 19 C 1.36934 * 125.64538 * 181.02248 * 18 17 16 20 20 H 1.07994 * 120.00253 * 185.05870 * 19 18 17 21 21 C 1.38814 * 119.99929 * 5.05960 * 19 18 17 22 22 N 1.31617 * 120.00236 * 5.08572 * 21 19 18 23 23 Si 1.86802 * 119.99800 * 184.80921 * 21 19 18 24 24 H 1.48503 * 109.47050 * 265.27561 * 23 21 19 25 25 H 1.48495 * 109.47143 * 25.27638 * 23 21 19 26 26 H 1.48502 * 109.46910 * 145.28067 * 23 21 19 27 27 C 1.47423 * 108.70401 * 1.29289 * 18 17 16 28 28 H 1.08997 * 109.47067 * 275.42140 * 1 2 3 29 29 H 1.08998 * 109.47462 * 35.42631 * 1 2 3 30 30 H 1.09008 * 109.46522 * 155.42893 * 1 2 3 31 31 H 1.08004 * 125.98889 * 0.02562 * 6 5 3 32 32 H 1.09000 * 109.47445 * 270.00028 * 9 8 7 33 33 H 1.09001 * 109.47042 * 30.00137 * 9 8 7 34 34 H 1.08999 * 109.47134 * 149.99756 * 9 8 7 35 35 H 1.08993 * 109.47203 * 0.02562 * 11 10 8 36 36 H 1.08992 * 110.71948 * 88.06152 * 16 14 2 37 37 H 1.09004 * 110.87149 * 324.85767 * 16 14 2 38 38 H 1.08998 * 109.87675 * 262.77612 * 17 16 14 39 39 H 1.08993 * 110.01222 * 141.68345 * 17 16 14 40 40 H 0.96996 * 120.00112 * 179.72405 * 22 21 19 41 41 H 1.08997 * 110.36728 * 94.48151 * 27 18 17 42 42 H 1.09000 * 110.36344 * 216.79845 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3523 1.1688 0.0794 5 6 1.4048 2.4422 -0.0963 6 6 0.1415 2.7274 0.4686 7 7 -0.1672 3.9581 0.1661 8 7 0.8639 4.5081 -0.6035 9 6 0.8949 5.8684 -1.1465 10 6 1.8202 3.5788 -0.7604 11 6 3.1099 3.7458 -1.5221 12 9 4.1914 3.5454 -0.6575 13 9 3.1629 2.8094 -2.5601 14 6 2.1976 -1.2687 0.0006 15 1 3.2718 -1.0971 0.0694 16 6 1.8485 -2.1130 -1.2535 17 6 2.1065 -3.5589 -0.7795 18 7 2.0267 -3.5577 0.6886 19 6 2.2164 -4.6451 1.4990 20 1 2.0559 -4.5598 2.5635 21 6 2.6150 -5.8571 0.9521 22 7 2.9075 -5.9368 -0.3287 23 14 2.7439 -7.3733 2.0357 24 1 4.1429 -7.5251 2.5102 25 1 1.8384 -7.2257 3.2033 26 1 2.3531 -8.5744 1.2548 27 6 1.7022 -2.1934 1.1433 28 1 -0.3633 0.0971 1.0230 29 1 -0.3634 0.8374 -0.5957 30 1 -0.3633 -0.9347 -0.4274 31 1 -0.4614 2.0467 1.0514 32 1 0.4404 5.8746 -2.1372 33 1 0.3391 6.5354 -0.4875 34 1 1.9284 6.2073 -1.2188 35 1 3.1587 4.7522 -1.9377 36 1 2.5045 -1.8571 -2.0854 37 1 0.8034 -1.9795 -1.5329 38 1 3.0983 -3.8814 -1.0965 39 1 1.3503 -4.2270 -1.1914 40 1 3.1899 -6.7828 -0.7099 41 1 0.6265 -2.0857 1.2823 42 1 2.2297 -1.9669 2.0698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033574607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:02 Heat of formation + Delta-G solvation = -32.000555 kcal Electronic energy + Delta-G solvation = -28888.225576 eV Core-core repulsion = 24541.640856 eV Total energy + Delta-G solvation = -4346.584720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.07927 -48.11475 -42.68956 -40.78376 -38.84667 -36.32980 -34.81739 -33.94121 -32.45869 -31.11791 -29.49461 -28.12777 -27.92930 -27.30302 -26.31192 -23.70962 -22.33616 -22.01841 -21.27213 -20.27914 -18.93082 -18.88745 -18.50497 -18.34061 -17.99399 -17.21289 -16.73928 -16.67017 -16.15809 -15.90002 -15.60213 -15.38953 -15.24534 -14.94844 -14.48308 -14.45946 -14.22260 -14.07681 -13.94495 -13.88017 -13.65544 -13.64700 -13.55595 -12.91699 -12.87718 -12.73283 -12.47014 -12.32238 -12.15991 -12.05125 -12.01176 -11.78974 -11.50954 -10.96965 -10.79548 -10.72828 -9.92786 -9.60988 -8.89619 -7.83221 -5.22266 0.06101 1.02210 1.06891 1.47109 1.49203 1.58417 1.82975 2.12457 2.46268 2.51884 2.95135 3.26548 3.33758 3.40633 3.68105 3.70420 3.78978 3.92949 3.98639 4.05456 4.20411 4.26889 4.30284 4.37774 4.48103 4.57157 4.64805 4.66169 4.66377 4.82097 4.91782 5.02085 5.15546 5.16825 5.42500 5.52568 5.58287 5.60226 5.75396 6.19749 6.24802 6.40782 7.08597 7.13916 7.75217 8.39549 9.25434 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.002908 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.946546 B = 9625.681279 C =10087.820391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.592 5.592 3 C 0.580 3.420 4 O -0.574 6.574 5 C -0.262 4.262 6 C 0.084 3.916 7 N -0.285 5.285 8 N -0.330 5.330 9 C 0.070 3.930 10 C 0.048 3.952 11 C 0.335 3.665 12 F -0.192 7.192 13 F -0.200 7.200 14 C 0.142 3.858 15 H 0.077 0.923 16 C -0.133 4.133 17 C 0.185 3.815 18 N -0.624 5.624 19 C -0.243 4.243 20 H 0.083 0.917 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.981 3.019 24 H -0.289 1.289 25 H -0.266 1.266 26 H -0.292 1.292 27 C 0.134 3.866 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.223 0.777 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.182 0.818 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.008 0.992 40 H 0.247 0.753 41 H 0.049 0.951 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.432 28.132 -4.250 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.323 5.323 3 C 0.369 3.631 4 O -0.454 6.454 5 C -0.278 4.278 6 C -0.101 4.101 7 N -0.106 5.106 8 N -0.109 5.109 9 C -0.068 4.068 10 C -0.086 4.086 11 C 0.280 3.720 12 F -0.173 7.173 13 F -0.181 7.181 14 C 0.037 3.963 15 H 0.095 0.905 16 C -0.172 4.172 17 C 0.059 3.941 18 N -0.351 5.351 19 C -0.372 4.372 20 H 0.101 0.899 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.809 3.191 24 H -0.216 1.216 25 H -0.191 1.191 26 H -0.219 1.219 27 C 0.008 3.992 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.239 0.761 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.199 0.801 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.026 0.974 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.636 29.008 -4.162 30.551 hybrid contribution 1.063 -2.165 0.353 2.438 sum -7.574 26.843 -3.808 28.150 Atomic orbital electron populations 1.22297 0.77364 1.04464 1.03445 1.47557 1.08316 1.04156 1.72243 1.17722 0.86242 0.83420 0.75696 1.90810 1.15259 1.87629 1.51667 1.20062 0.99806 0.95096 1.12851 1.24658 0.93448 0.93780 0.98252 1.77238 1.10115 1.10644 1.12642 1.48674 1.11850 1.12472 1.37940 1.22705 1.06989 0.75471 1.01600 1.21948 0.94125 0.90905 1.01655 1.20223 0.79229 0.94503 0.78069 1.93100 1.56288 1.96481 1.71466 1.93047 1.96418 1.70083 1.58558 1.21985 0.96292 0.82062 0.95977 0.90495 1.23026 1.02274 0.94972 0.96907 1.20922 0.98320 0.91606 0.83216 1.44667 1.83052 1.04667 1.02687 1.19453 1.38689 0.88180 0.90884 0.89869 1.25700 1.01457 1.01040 0.97681 1.70180 1.52279 1.24999 1.12444 0.85031 0.77658 0.78630 0.77808 1.21602 1.19055 1.21866 1.21913 0.98181 0.84070 0.95063 0.89968 0.89147 0.90178 0.76085 0.87374 0.86799 0.86209 0.80144 0.91312 0.89423 0.95982 0.97369 0.94323 0.93344 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 7.57 127.77 0.97 2.36 16 2 N -0.59 -18.34 2.91 -818.26 -2.38 -20.72 16 3 C 0.58 19.31 7.48 86.67 0.65 19.96 16 4 O -0.57 -24.05 14.55 -4.03 -0.06 -24.11 16 5 C -0.26 -6.64 5.42 -20.15 -0.11 -6.75 16 6 C 0.08 1.61 9.70 85.65 0.83 2.44 16 7 N -0.29 -5.28 12.50 -56.27 -0.70 -5.98 16 8 N -0.33 -4.92 3.98 -354.31 -1.41 -6.33 16 9 C 0.07 0.22 11.10 127.77 1.42 1.64 16 10 C 0.05 1.00 6.43 42.14 0.27 1.27 16 11 C 0.33 6.35 5.19 71.24 0.37 6.72 16 12 F -0.19 -5.25 15.76 44.97 0.71 -4.55 16 13 F -0.20 -5.05 17.32 44.97 0.78 -4.27 16 14 C 0.14 5.53 3.46 46.46 0.16 5.69 16 15 H 0.08 3.51 7.02 -2.39 -0.02 3.49 16 16 C -0.13 -5.19 6.49 31.78 0.21 -4.98 16 17 C 0.18 9.44 5.42 86.73 0.47 9.91 16 18 N -0.62 -33.09 3.39 -691.56 -2.35 -35.44 16 19 C -0.24 -13.96 10.27 84.03 0.86 -13.10 16 20 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 21 C -0.07 -3.82 5.47 84.86 0.46 -3.36 16 22 N -0.95 -58.42 10.40 21.65 0.23 -58.19 16 23 Si 0.98 46.59 29.56 68.60 2.03 48.62 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 C 0.13 5.68 6.79 86.93 0.59 6.27 16 28 H 0.08 1.36 7.28 -2.39 -0.02 1.34 16 29 H 0.09 1.55 5.83 -2.39 -0.01 1.53 16 30 H 0.08 1.75 6.37 -2.38 -0.02 1.74 16 31 H 0.22 2.96 6.13 -2.91 -0.02 2.95 16 32 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 34 H 0.12 -0.30 7.02 -2.39 -0.02 -0.31 16 35 H 0.18 1.00 6.72 -2.39 -0.02 0.98 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.09 2.94 6.48 -2.38 -0.02 2.93 16 38 H 0.02 1.29 6.97 -2.39 -0.02 1.27 16 39 H 0.01 0.45 7.88 -2.39 -0.02 0.43 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.05 1.84 6.95 -2.39 -0.02 1.82 16 42 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -84.37 345.82 5.06 -79.31 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.07 Total: 3.59 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 7.15 Total: 28.07 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -6.62 Total: -126.66 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.06 Total: -24.11 kcal Atomic # 9 Polarization: -10.31 SS G_CDS: 1.49 Total: -8.82 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -84.37 5.06 -79.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033574607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.314 kcal (2) G-P(sol) polarization free energy of solvation -84.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds