Wall clock time and date at job start Tue Mar 31 2020 17:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48503 * 109.46945 * 269.99625 * 3 2 1 5 5 H 1.48499 * 109.47326 * 29.99506 * 3 2 1 6 6 H 1.48499 * 109.47452 * 149.99638 * 3 2 1 7 7 C 1.38811 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99836 * 160.42487 * 7 2 1 9 9 N 1.36941 * 119.99944 * 340.43232 * 7 2 1 10 10 C 1.50167 * 120.53818 * 336.70842 * 9 7 2 11 11 C 1.46234 * 107.58702 * 109.60240 * 10 9 7 12 12 C 1.52530 * 114.27763 * 58.38094 * 11 10 9 13 13 C 1.50129 * 105.40930 * 270.59118 * 12 11 10 14 14 H 1.08999 * 109.20720 * 337.33304 * 13 12 11 15 15 N 1.46505 * 109.20314 * 218.02605 * 13 12 11 16 16 C 1.34780 * 119.99711 * 154.99696 * 15 13 12 17 17 O 1.21572 * 120.00213 * 0.02562 * 16 15 13 18 18 C 1.47695 * 119.99860 * 179.97438 * 16 15 13 19 19 C 1.40110 * 120.02678 * 359.72626 * 18 16 15 20 20 C 1.36427 * 120.68661 * 179.74155 * 19 18 16 21 21 C 1.39158 * 120.27647 * 0.54685 * 20 19 18 22 22 O 1.34743 * 133.25856 * 179.75361 * 21 20 19 23 23 C 1.34450 * 110.95863 * 179.97438 * 22 21 20 24 24 C 1.33952 * 110.19603 * 0.02562 * 23 22 21 25 25 C 1.40674 * 119.53894 * 359.71695 * 21 20 19 26 26 C 1.39082 * 120.20585 * 0.02562 * 25 21 20 27 27 C 1.54843 * 110.81812 * 97.68523 * 13 12 11 28 28 C 1.43408 * 120.51745 * 156.60402 * 9 7 2 29 29 H 0.96994 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.84315 * 350.06210 * 10 9 7 31 31 H 1.08998 * 109.84364 * 229.15036 * 10 9 7 32 32 H 1.09008 * 108.52074 * 179.61720 * 11 10 9 33 33 H 1.08993 * 108.52569 * 297.28742 * 11 10 9 34 34 H 1.08996 * 110.24588 * 29.55656 * 12 11 10 35 35 H 1.08996 * 110.25362 * 151.61687 * 12 11 10 36 36 H 0.96998 * 120.00204 * 335.00181 * 15 13 12 37 37 H 1.07997 * 119.65471 * 0.02562 * 19 18 16 38 38 H 1.08002 * 119.86617 * 180.24158 * 20 19 18 39 39 H 1.07995 * 124.89925 * 179.97438 * 23 22 21 40 40 H 1.08004 * 126.92472 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.32799 * 180.02562 * 26 25 21 42 42 H 1.08994 * 109.36218 * 81.33353 * 27 13 12 43 43 H 1.09000 * 109.35375 * 201.06174 * 27 13 12 44 44 H 1.08991 * 108.12352 * 149.82821 * 28 9 7 45 45 H 1.08997 * 107.97295 * 33.16921 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0435 -1.2292 -0.3128 9 7 1.3850 -2.3536 0.3983 10 6 0.1857 -2.2982 1.3004 11 6 -0.9813 -2.6841 0.5082 12 6 -0.8835 -4.0715 -0.1178 13 6 -0.2339 -3.8611 -1.4549 14 1 -0.3857 -2.8283 -1.7687 15 7 -0.8500 -4.7575 -2.4363 16 6 -0.8275 -4.4402 -3.7461 17 8 -0.2956 -3.4105 -4.1131 18 6 -1.4480 -5.3442 -4.7356 19 6 -2.0552 -6.5344 -4.3140 20 6 -2.6370 -7.3767 -5.2159 21 6 -2.6248 -7.0685 -6.5729 22 8 -3.1026 -7.6944 -7.6662 23 6 -2.8396 -6.9869 -8.7789 24 6 -2.1770 -5.8651 -8.4677 25 6 -2.0133 -5.8788 -7.0084 26 6 -1.4248 -5.0172 -6.0888 27 6 1.2849 -4.1532 -1.3809 28 6 1.8637 -3.6317 -0.0421 29 1 -0.4850 0.8400 -0.0004 30 1 0.0559 -1.2852 1.6814 31 1 0.3152 -2.9921 2.1310 32 1 -1.8611 -2.6556 1.1512 33 1 -1.1141 -1.9547 -0.2908 34 1 -0.2675 -4.7226 0.5025 35 1 -1.8780 -4.4992 -0.2447 36 1 -1.2741 -5.5792 -2.1436 37 1 -2.0667 -6.7855 -3.2637 38 1 -3.1047 -8.2889 -4.8759 39 1 -3.1211 -7.2811 -9.7791 40 1 -1.8335 -5.1034 -9.1521 41 1 -0.9551 -4.1032 -6.4210 42 1 1.4499 -5.2283 -1.4516 43 1 1.7893 -3.6550 -2.2088 44 1 1.6385 -4.3637 0.7334 45 1 2.9473 -3.5687 -0.1421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052402607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:35 Heat of formation + Delta-G solvation = 27.867542 kcal Electronic energy + Delta-G solvation = -27764.311866 eV Core-core repulsion = 23942.260000 eV Total energy + Delta-G solvation = -3822.051866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 8.12 seconds Orbital eigenvalues (eV) -42.70820 -39.87754 -38.08334 -37.10365 -34.64359 -33.17284 -32.28082 -31.54486 -30.87644 -29.96775 -29.24736 -26.17759 -24.60720 -23.82139 -22.93866 -22.62365 -21.59463 -20.52825 -19.89952 -19.09629 -17.96562 -17.55430 -16.86708 -16.50034 -16.38287 -15.60565 -15.07393 -14.71217 -14.53719 -14.40189 -13.96238 -13.80941 -13.68970 -13.44966 -13.17601 -12.99647 -12.92569 -12.39606 -12.24392 -12.20129 -11.80810 -11.42376 -11.21585 -11.20755 -10.73035 -10.58744 -10.53316 -10.35371 -10.20611 -10.01973 -9.73974 -9.49389 -9.45298 -9.31345 -8.88240 -8.56640 -8.51086 -8.31044 -6.65668 -5.72954 -3.11364 0.66794 0.74898 2.08607 2.47336 2.93658 3.43960 3.45806 3.51157 3.53222 3.80593 4.18330 4.36127 4.57835 4.73350 4.76214 4.92554 5.05755 5.09881 5.32316 5.39100 5.44095 5.58645 5.59516 5.74498 5.89000 5.91219 5.94178 6.05007 6.06967 6.12700 6.27025 6.30433 6.33795 6.44092 6.51533 6.73728 6.83331 6.90730 6.92966 6.97187 7.06585 7.17685 7.25325 7.62693 7.80420 7.88896 8.01485 8.49146 8.57344 9.25473 9.93009 10.45100 11.34890 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.002734 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.671364 B =10239.859150 C =10985.803892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.155 3.845 14 H 0.104 0.896 15 N -0.722 5.722 16 C 0.552 3.448 17 O -0.527 6.527 18 C -0.144 4.144 19 C -0.063 4.063 20 C -0.113 4.113 21 C 0.067 3.933 22 O -0.195 6.195 23 C 0.001 3.999 24 C -0.200 4.200 25 C -0.143 4.143 26 C -0.007 4.007 27 C -0.151 4.151 28 C 0.162 3.838 29 H 0.252 0.748 30 H 0.090 0.910 31 H 0.006 0.994 32 H 0.030 0.970 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.389 0.611 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.209 0.791 40 H 0.161 0.839 41 H 0.143 0.857 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.028 0.972 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.900 -17.065 -11.109 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.169 4.169 12 C -0.159 4.159 13 C 0.053 3.947 14 H 0.122 0.878 15 N -0.373 5.373 16 C 0.338 3.662 17 O -0.404 6.404 18 C -0.147 4.147 19 C -0.082 4.082 20 C -0.131 4.131 21 C 0.019 3.981 22 O -0.096 6.096 23 C -0.064 4.064 24 C -0.219 4.219 25 C -0.144 4.144 26 C -0.026 4.026 27 C -0.193 4.193 28 C 0.032 3.968 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.024 0.976 32 H 0.048 0.952 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.224 0.776 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.226 0.774 40 H 0.179 0.821 41 H 0.161 0.839 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.735 -16.378 -11.295 21.346 hybrid contribution 0.158 0.534 -0.296 0.631 sum -7.576 -15.844 -11.591 21.043 Atomic orbital electron populations 1.69953 1.05070 1.25184 1.54287 1.24881 0.95230 0.98202 1.01189 0.86342 0.79164 0.83928 0.77628 1.21548 1.21705 1.20701 1.19181 0.93629 0.85299 1.39656 0.91545 1.44279 1.33705 1.00918 1.52030 1.20159 0.85246 1.00557 0.89888 1.20935 0.98473 0.95008 1.02451 1.21370 0.98712 0.99830 0.96024 1.21316 0.92124 0.94892 0.86387 0.87850 1.46445 1.58724 1.25552 1.06565 1.18075 0.79891 0.85566 0.82666 1.90839 1.44561 1.25373 1.79637 1.19997 1.03908 0.96713 0.94086 1.20798 0.95264 0.92542 0.99549 1.19534 1.04260 1.02022 0.87326 1.19845 0.97553 0.92226 0.88456 1.83988 1.66006 1.45917 1.13681 1.23954 1.00339 0.92111 0.89951 1.22582 1.05402 1.00540 0.93395 1.19917 1.03952 0.96602 0.93940 1.20720 0.93519 0.97890 0.90435 1.23309 0.95257 0.98527 1.02244 1.20360 0.96401 0.88220 0.91843 0.93797 0.89141 0.97590 0.95153 0.87892 0.91830 0.92837 0.77634 0.84359 0.84541 0.77442 0.82142 0.83902 0.93667 0.92470 0.95335 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.22 9.43 55.49 0.52 -24.69 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 22.00 29.60 -169.99 -5.03 16.97 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.79 9.62 -15.06 -0.14 -6.94 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 N -0.59 -14.39 2.61 -175.10 -0.46 -14.85 16 10 C 0.16 3.78 5.24 -5.21 -0.03 3.76 16 11 C -0.13 -2.72 5.02 -30.19 -0.15 -2.87 16 12 C -0.12 -2.10 5.34 -28.40 -0.15 -2.25 16 13 C 0.16 2.97 2.22 -68.38 -0.15 2.82 16 14 H 0.10 2.55 6.26 -51.93 -0.33 2.23 16 15 N -0.72 -11.26 4.92 -55.24 -0.27 -11.53 16 16 C 0.55 9.56 7.72 -12.40 -0.10 9.46 16 17 O -0.53 -11.66 16.00 5.30 0.08 -11.58 16 18 C -0.14 -1.98 5.87 -104.96 -0.62 -2.60 16 19 C -0.06 -0.66 9.46 -39.53 -0.37 -1.03 16 20 C -0.11 -1.12 9.99 -39.89 -0.40 -1.51 16 21 C 0.07 0.76 7.42 -38.32 -0.28 0.48 16 22 O -0.19 -2.00 10.57 4.09 0.04 -1.95 16 23 C 0.00 0.01 11.95 29.23 0.35 0.36 16 24 C -0.20 -1.85 11.14 -37.61 -0.42 -2.27 16 25 C -0.14 -1.73 6.39 -105.18 -0.67 -2.40 16 26 C -0.01 -0.09 9.64 -38.90 -0.38 -0.47 16 27 C -0.15 -2.96 5.98 -24.75 -0.15 -3.11 16 28 C 0.16 3.39 5.17 -4.67 -0.02 3.36 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.09 2.33 6.05 -51.93 -0.31 2.02 16 31 H 0.01 0.13 8.13 -51.93 -0.42 -0.30 16 32 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.10 2.57 5.29 -51.93 -0.27 2.30 16 34 H 0.06 1.05 6.29 -51.93 -0.33 0.72 16 35 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 36 H 0.39 4.56 6.49 -40.82 -0.26 4.30 16 37 H 0.14 1.06 6.37 -52.49 -0.33 0.73 16 38 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.21 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.14 2.01 7.65 -52.49 -0.40 1.61 16 42 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16 45 H 0.03 0.71 7.98 -51.93 -0.41 0.30 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -32.65 357.56 -9.42 -42.07 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.93 Total: 5.40 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.77 Total: -5.23 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.21 Total: -51.08 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.13 Total: -13.53 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.65 -9.42 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052402607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.940 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.12 seconds