Wall clock time and date at job start Tue Mar 31 2020 15:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46502 * 119.99485 * 2 1 4 4 C 1.52994 * 109.47088 * 277.73757 * 3 2 1 5 5 H 1.09004 * 112.96559 * 49.72720 * 4 3 2 6 6 C 1.53944 * 113.77005 * 181.40560 * 4 3 2 7 7 C 1.53944 * 86.29365 * 137.91085 * 6 4 3 8 8 N 1.47581 * 86.23644 * 336.33969 * 7 6 4 9 9 C 1.36942 * 134.49022 * 204.69676 * 8 7 6 10 10 H 1.07999 * 119.99915 * 186.94792 * 9 8 7 11 11 C 1.38809 * 120.00158 * 6.94668 * 9 8 7 12 12 N 1.31630 * 119.99953 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00263 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47192 * 60.00063 * 13 11 9 15 15 H 1.48502 * 109.47265 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47317 * 300.00170 * 13 11 9 17 17 C 1.34770 * 120.00153 * 179.97438 * 2 1 3 18 18 O 1.21601 * 120.00053 * 185.95202 * 17 2 1 19 19 C 1.47430 * 119.99951 * 5.95499 * 17 2 1 20 20 C 1.38041 * 126.41636 * 6.58676 * 19 17 2 21 21 N 1.34263 * 107.41773 * 179.97438 * 20 19 17 22 22 C 1.46499 * 125.75400 * 179.97438 * 21 20 19 23 23 N 1.39938 * 108.48912 * 359.97438 * 21 20 19 24 24 C 1.30449 * 108.89796 * 359.73965 * 23 21 20 25 25 C 1.50695 * 125.98583 * 180.26413 * 24 23 21 26 26 F 1.39900 * 109.47311 * 30.17050 * 25 24 23 27 27 F 1.39895 * 109.46936 * 150.17110 * 25 24 23 28 28 H 1.08997 * 109.47212 * 95.99658 * 1 2 3 29 29 H 1.09005 * 109.46696 * 215.99295 * 1 2 3 30 30 H 1.08997 * 109.47246 * 335.99059 * 1 2 3 31 31 H 1.08997 * 109.46535 * 157.74152 * 3 2 1 32 32 H 1.09000 * 109.47289 * 37.74181 * 3 2 1 33 33 H 1.08996 * 113.74178 * 23.56329 * 6 4 3 34 34 H 1.09001 * 113.84004 * 252.26894 * 6 4 3 35 35 H 1.09002 * 113.77016 * 90.69449 * 7 6 4 36 36 H 1.08992 * 113.77266 * 221.97915 * 7 6 4 37 37 H 0.97000 * 120.00017 * 179.97438 * 12 11 9 38 38 H 1.08004 * 126.29040 * 359.97438 * 20 19 17 39 39 H 1.08998 * 109.46976 * 89.99410 * 22 21 20 40 40 H 1.08993 * 109.47168 * 209.99589 * 22 21 20 41 41 H 1.09007 * 109.47011 * 329.99407 * 22 21 20 42 42 H 1.08997 * 109.47178 * 270.17190 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2842 1.8076 -1.4293 5 1 1.3202 1.8215 -1.9378 6 6 3.0677 3.1274 -1.5485 7 6 3.7026 2.5203 -2.8126 8 7 3.3738 1.2055 -2.2284 9 6 3.8769 -0.0603 -2.3695 10 1 3.3776 -0.8952 -1.9006 11 6 5.0287 -0.2702 -3.1154 12 7 5.6369 0.7474 -3.6874 13 14 5.7146 -1.9969 -3.3085 14 1 4.7006 -2.8619 -3.9632 15 1 6.9406 -1.9518 -4.1453 16 1 6.0476 -2.5497 -1.9711 17 6 2.1390 -1.1671 0.0005 18 8 3.3501 -1.1699 0.1097 19 6 1.4078 -2.4405 -0.1314 20 6 0.0597 -2.5886 -0.3889 21 7 -0.1992 -3.9054 -0.4306 22 6 -1.5093 -4.5127 -0.6775 23 7 0.9933 -4.5997 -0.1983 24 6 1.9571 -3.7379 -0.0249 25 6 3.4023 -4.0683 0.2458 26 9 3.7235 -5.2873 -0.3609 27 9 4.2172 -3.0583 -0.2767 28 1 -0.3633 -0.1074 -1.0220 29 1 -0.3633 -0.8315 0.6040 30 1 -0.3633 0.9387 0.4181 31 1 3.2028 1.1079 0.3893 32 1 1.6753 1.9898 0.6290 33 1 3.7765 3.2918 -0.7369 34 1 2.4398 3.9961 -1.7467 35 1 3.1561 2.7429 -3.7291 36 1 4.7729 2.7071 -2.8997 37 1 6.4420 0.6007 -4.2083 38 1 -0.6553 -1.7916 -0.5308 39 1 -1.6412 -4.6693 -1.7481 40 1 -1.5692 -5.4702 -0.1602 41 1 -2.2923 -3.8504 -0.3079 42 1 3.5624 -4.1444 1.3212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:53 Heat of formation + Delta-G solvation = 44.981150 kcal Electronic energy + Delta-G solvation = -30227.045352 eV Core-core repulsion = 25883.798809 eV Total energy + Delta-G solvation = -4343.246543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.145 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -48.46084 -46.41730 -41.56078 -39.10297 -37.39126 -35.06381 -33.79626 -31.89359 -30.98520 -28.57227 -28.05063 -27.57679 -26.64077 -25.24132 -23.06662 -22.78874 -21.64853 -20.54189 -19.28932 -18.88908 -17.17768 -17.11992 -16.72775 -16.59161 -16.24928 -15.74515 -15.67444 -15.42967 -14.97043 -14.47972 -13.97528 -13.65793 -13.54728 -13.40920 -13.19307 -13.08841 -12.95151 -12.72747 -12.57149 -12.35269 -12.34780 -11.74559 -11.43053 -11.22869 -11.13894 -10.95425 -10.81064 -10.66419 -10.41007 -10.26338 -9.79854 -9.67908 -9.49690 -9.22510 -8.99388 -8.66943 -8.41808 -8.02936 -6.55927 -5.42134 -2.73386 1.45637 1.95810 2.09669 3.42186 3.69106 3.69549 3.77736 3.84334 3.88942 4.19215 4.48387 4.52408 4.75227 4.80814 4.91004 5.00136 5.06962 5.16145 5.21357 5.30531 5.35534 5.39256 5.59015 5.68995 5.71408 5.77873 5.93469 6.04095 6.08827 6.13818 6.45222 6.50826 6.61411 6.80554 6.86762 7.06849 7.31512 7.46509 7.64186 7.87770 7.95170 8.35738 8.88512 9.42118 10.08100 10.89781 11.74370 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.006460 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.712840 B = 4333.571372 C = 5970.080188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.120 3.880 4 C 0.124 3.876 5 H 0.039 0.961 6 C -0.157 4.157 7 C 0.150 3.850 8 N -0.595 5.595 9 C -0.192 4.192 10 H 0.092 0.908 11 C -0.012 4.012 12 N -0.933 5.933 13 Si 0.898 3.102 14 H -0.294 1.294 15 H -0.299 1.299 16 H -0.269 1.269 17 C 0.574 3.426 18 O -0.476 6.476 19 C -0.244 4.244 20 C 0.074 3.926 21 N -0.360 5.360 22 C 0.097 3.903 23 N -0.266 5.266 24 C 0.050 3.950 25 C 0.349 3.651 26 F -0.200 7.200 27 F -0.143 7.143 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.018 0.982 36 H 0.079 0.921 37 H 0.247 0.753 38 H 0.205 0.795 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.898 -4.312 10.909 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.346 5.346 3 C -0.004 4.004 4 C 0.015 3.985 5 H 0.057 0.943 6 C -0.196 4.196 7 C 0.024 3.976 8 N -0.321 5.321 9 C -0.320 4.320 10 H 0.110 0.890 11 C -0.206 4.206 12 N -0.582 5.582 13 Si 0.729 3.271 14 H -0.221 1.221 15 H -0.225 1.225 16 H -0.195 1.195 17 C 0.361 3.639 18 O -0.348 6.348 19 C -0.259 4.259 20 C -0.075 4.075 21 N -0.140 5.140 22 C -0.044 4.044 23 N -0.089 5.089 24 C -0.119 4.119 25 C 0.293 3.707 26 F -0.181 7.181 27 F -0.123 7.123 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.222 0.778 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.404 -5.890 10.759 21.292 hybrid contribution 0.187 -0.163 -0.642 0.688 sum -17.217 -6.054 10.117 20.867 Atomic orbital electron populations 1.22172 0.81853 1.02699 1.00761 1.47438 1.05524 1.06342 1.75249 1.21930 0.98091 0.82536 0.97812 1.22701 0.92880 0.91520 0.91380 0.94329 1.23773 0.99387 0.95098 1.01383 1.22288 1.00310 0.83829 0.91123 1.46089 1.33823 1.04671 1.47520 1.19326 1.04611 0.82960 1.25076 0.89015 1.24651 0.97862 0.96886 1.01237 1.69824 1.20844 1.28600 1.38971 0.86385 0.77832 0.84689 0.78172 1.22117 1.22518 1.19480 1.17053 0.86919 0.81902 0.78039 1.90990 1.12077 1.85819 1.45943 1.20344 0.92872 0.94345 1.18346 1.24248 0.97563 0.87182 0.98502 1.48412 1.08077 1.04520 1.52989 1.22011 0.78563 1.00470 1.03326 1.77097 0.89972 1.19541 1.22247 1.22994 0.96144 0.91711 1.01038 1.19431 0.82299 0.73012 0.95943 1.93002 1.93429 1.45343 1.86325 1.93361 1.72239 1.58231 1.88508 0.92865 0.91272 0.90856 0.88550 0.91838 0.90727 0.93419 0.96436 0.90244 0.94341 0.77850 0.90043 0.88819 0.88892 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 8.67 59.85 0.52 1.23 16 2 N -0.61 -9.94 2.88 -182.85 -0.53 -10.47 16 3 C 0.12 2.09 5.43 -4.04 -0.02 2.06 16 4 C 0.12 2.48 4.53 -66.68 -0.30 2.17 16 5 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 6 C -0.16 -3.00 7.86 -25.80 -0.20 -3.20 16 7 C 0.15 3.68 7.69 -2.98 -0.02 3.65 16 8 N -0.60 -15.69 3.58 -169.68 -0.61 -16.30 16 9 C -0.19 -5.72 9.46 -15.06 -0.14 -5.86 16 10 H 0.09 2.73 4.37 -52.49 -0.23 2.50 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -29.86 11.27 55.49 0.63 -29.24 16 13 Si 0.90 25.56 29.42 -169.99 -5.00 20.56 16 14 H -0.29 -8.38 7.11 56.52 0.40 -7.97 16 15 H -0.30 -8.44 7.11 56.52 0.40 -8.04 16 16 H -0.27 -7.66 6.59 56.52 0.37 -7.29 16 17 C 0.57 11.12 6.08 -12.52 -0.08 11.04 16 18 O -0.48 -11.25 10.09 5.28 0.05 -11.20 16 19 C -0.24 -4.11 5.93 -105.07 -0.62 -4.73 16 20 C 0.07 0.90 9.40 -16.56 -0.16 0.74 16 21 N -0.36 -4.29 3.98 -67.60 -0.27 -4.56 16 22 C 0.10 0.60 11.44 59.85 0.68 1.28 16 23 N -0.27 -4.21 12.43 33.89 0.42 -3.79 16 24 C 0.05 0.87 6.89 -82.02 -0.56 0.31 16 25 C 0.35 6.22 5.70 36.00 0.21 6.43 16 26 F -0.20 -3.70 17.27 2.25 0.04 -3.66 16 27 F -0.14 -3.28 12.81 2.25 0.03 -3.25 16 28 H 0.05 0.52 7.38 -51.93 -0.38 0.14 16 29 H 0.07 0.57 5.31 -51.93 -0.28 0.29 16 30 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 31 H 0.10 2.02 7.14 -51.93 -0.37 1.65 16 32 H 0.06 0.86 7.99 -51.93 -0.41 0.44 16 33 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 2.19 6.86 -51.93 -0.36 1.83 16 37 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.21 1.66 4.41 -52.48 -0.23 1.43 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -40.54 343.91 -6.07 -46.61 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -5.22 Total: -4.54 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: -0.80 Total: 14.66 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.36 Total: -64.35 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.05 Total: -11.20 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.07 Total: -6.91 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.00 Total: 20.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -40.54 -6.07 -46.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.590 kcal (2) G-P(sol) polarization free energy of solvation -40.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds