Wall clock time and date at job start Tue Mar 31 2020 15:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46502 * 119.99485 * 2 1 4 4 C 1.52994 * 109.47088 * 277.73757 * 3 2 1 5 5 H 1.09004 * 112.96559 * 49.72720 * 4 3 2 6 6 C 1.53944 * 113.77005 * 181.40560 * 4 3 2 7 7 C 1.53944 * 86.29365 * 137.91085 * 6 4 3 8 8 N 1.47581 * 86.23644 * 336.33969 * 7 6 4 9 9 C 1.36942 * 134.49022 * 204.69676 * 8 7 6 10 10 H 1.07999 * 119.99915 * 186.94792 * 9 8 7 11 11 C 1.38809 * 120.00158 * 6.94668 * 9 8 7 12 12 N 1.31630 * 119.99953 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00263 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47192 * 60.00063 * 13 11 9 15 15 H 1.48502 * 109.47265 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47317 * 300.00170 * 13 11 9 17 17 C 1.34770 * 120.00153 * 179.97438 * 2 1 3 18 18 O 1.21601 * 120.00053 * 185.95202 * 17 2 1 19 19 C 1.47430 * 119.99951 * 5.95499 * 17 2 1 20 20 C 1.38041 * 126.41636 * 6.58676 * 19 17 2 21 21 N 1.34263 * 107.41773 * 179.97438 * 20 19 17 22 22 C 1.46499 * 125.75400 * 179.97438 * 21 20 19 23 23 N 1.39938 * 108.48912 * 359.97438 * 21 20 19 24 24 C 1.30449 * 108.89796 * 359.73965 * 23 21 20 25 25 C 1.50695 * 125.98583 * 180.26413 * 24 23 21 26 26 F 1.39900 * 109.47311 * 30.17050 * 25 24 23 27 27 F 1.39895 * 109.46936 * 150.17110 * 25 24 23 28 28 H 1.08997 * 109.47212 * 95.99658 * 1 2 3 29 29 H 1.09005 * 109.46696 * 215.99295 * 1 2 3 30 30 H 1.08997 * 109.47246 * 335.99059 * 1 2 3 31 31 H 1.08997 * 109.46535 * 157.74152 * 3 2 1 32 32 H 1.09000 * 109.47289 * 37.74181 * 3 2 1 33 33 H 1.08996 * 113.74178 * 23.56329 * 6 4 3 34 34 H 1.09001 * 113.84004 * 252.26894 * 6 4 3 35 35 H 1.09002 * 113.77016 * 90.69449 * 7 6 4 36 36 H 1.08992 * 113.77266 * 221.97915 * 7 6 4 37 37 H 0.97000 * 120.00017 * 179.97438 * 12 11 9 38 38 H 1.08004 * 126.29040 * 359.97438 * 20 19 17 39 39 H 1.08998 * 109.46976 * 89.99410 * 22 21 20 40 40 H 1.08993 * 109.47168 * 209.99589 * 22 21 20 41 41 H 1.09007 * 109.47011 * 329.99407 * 22 21 20 42 42 H 1.08997 * 109.47178 * 270.17190 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2842 1.8076 -1.4293 5 1 1.3202 1.8215 -1.9378 6 6 3.0677 3.1274 -1.5485 7 6 3.7026 2.5203 -2.8126 8 7 3.3738 1.2055 -2.2284 9 6 3.8769 -0.0603 -2.3695 10 1 3.3776 -0.8952 -1.9006 11 6 5.0287 -0.2702 -3.1154 12 7 5.6369 0.7474 -3.6874 13 14 5.7146 -1.9969 -3.3085 14 1 4.7006 -2.8619 -3.9632 15 1 6.9406 -1.9518 -4.1453 16 1 6.0476 -2.5497 -1.9711 17 6 2.1390 -1.1671 0.0005 18 8 3.3501 -1.1699 0.1097 19 6 1.4078 -2.4405 -0.1314 20 6 0.0597 -2.5886 -0.3889 21 7 -0.1992 -3.9054 -0.4306 22 6 -1.5093 -4.5127 -0.6775 23 7 0.9933 -4.5997 -0.1983 24 6 1.9571 -3.7379 -0.0249 25 6 3.4023 -4.0683 0.2458 26 9 3.7235 -5.2873 -0.3609 27 9 4.2172 -3.0583 -0.2767 28 1 -0.3633 -0.1074 -1.0220 29 1 -0.3633 -0.8315 0.6040 30 1 -0.3633 0.9387 0.4181 31 1 3.2028 1.1079 0.3893 32 1 1.6753 1.9898 0.6290 33 1 3.7765 3.2918 -0.7369 34 1 2.4398 3.9961 -1.7467 35 1 3.1561 2.7429 -3.7291 36 1 4.7729 2.7071 -2.8997 37 1 6.4420 0.6007 -4.2083 38 1 -0.6553 -1.7916 -0.5308 39 1 -1.6412 -4.6693 -1.7481 40 1 -1.5692 -5.4702 -0.1602 41 1 -2.2923 -3.8504 -0.3079 42 1 3.5624 -4.1444 1.3212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:52 Heat of formation + Delta-G solvation = 14.460788 kcal Electronic energy + Delta-G solvation = -30228.368814 eV Core-core repulsion = 25883.798809 eV Total energy + Delta-G solvation = -4344.570005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.92346 -47.93149 -42.63212 -40.50470 -39.07251 -36.37442 -34.74796 -34.08031 -32.18448 -29.77367 -29.54445 -29.21912 -27.75739 -26.32899 -25.14152 -24.25140 -22.75585 -21.77655 -20.74183 -20.46478 -18.70240 -18.52485 -18.24126 -18.02683 -17.58036 -16.94967 -16.82865 -16.66917 -16.52238 -16.09753 -15.70047 -15.14256 -15.01711 -14.75333 -14.61658 -14.35332 -14.11548 -14.01157 -13.76826 -13.54898 -13.41613 -13.30140 -12.99551 -12.91173 -12.78415 -12.48415 -12.42946 -12.30164 -12.25754 -11.92672 -11.66313 -11.37016 -11.14941 -10.74163 -10.69307 -10.46423 -9.81176 -9.36276 -8.66419 -7.75202 -5.02046 0.46523 0.70769 1.22688 1.34108 1.38374 1.53851 2.21829 2.54684 2.56419 2.68398 3.04597 3.34808 3.45195 3.51174 3.74615 3.90710 3.93941 4.06470 4.10758 4.26877 4.35619 4.41122 4.42712 4.51594 4.56843 4.63460 4.70947 4.75940 4.84085 4.93226 4.94246 5.01963 5.14713 5.27193 5.50449 5.75435 5.78181 5.83675 5.92417 6.15074 6.22216 6.67690 7.14283 7.57228 7.82524 8.72691 9.41564 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.006460 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.712840 B = 4333.571372 C = 5970.080188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.612 5.612 3 C 0.126 3.874 4 C 0.128 3.872 5 H 0.064 0.936 6 C -0.126 4.126 7 C 0.136 3.864 8 N -0.628 5.628 9 C -0.164 4.164 10 H 0.091 0.909 11 C -0.077 4.077 12 N -0.962 5.962 13 Si 0.937 3.063 14 H -0.298 1.298 15 H -0.300 1.300 16 H -0.278 1.278 17 C 0.565 3.435 18 O -0.537 6.537 19 C -0.285 4.285 20 C 0.107 3.893 21 N -0.347 5.347 22 C 0.082 3.918 23 N -0.288 5.288 24 C 0.027 3.973 25 C 0.336 3.664 26 F -0.209 7.209 27 F -0.177 7.177 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.016 0.984 36 H 0.038 0.962 37 H 0.236 0.764 38 H 0.252 0.748 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.139 0.861 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.091 -3.391 12.241 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.345 5.345 3 C 0.002 3.998 4 C 0.021 3.979 5 H 0.082 0.918 6 C -0.165 4.165 7 C 0.011 3.989 8 N -0.354 5.354 9 C -0.293 4.293 10 H 0.108 0.892 11 C -0.268 4.268 12 N -0.616 5.616 13 Si 0.770 3.230 14 H -0.226 1.226 15 H -0.227 1.227 16 H -0.205 1.205 17 C 0.353 3.647 18 O -0.414 6.414 19 C -0.300 4.300 20 C -0.044 4.044 21 N -0.126 5.126 22 C -0.056 4.056 23 N -0.112 5.112 24 C -0.141 4.141 25 C 0.281 3.719 26 F -0.191 7.191 27 F -0.158 7.158 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.034 0.966 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.267 0.733 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.157 0.843 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.700 -4.981 12.114 26.208 hybrid contribution 1.527 -0.465 -0.981 1.873 sum -21.174 -5.445 11.133 24.534 Atomic orbital electron populations 1.22580 0.77860 1.05742 1.02364 1.47552 1.08061 1.04856 1.74018 1.21737 0.97279 0.84296 0.96500 1.22994 0.92048 0.90811 0.92012 0.91832 1.23494 0.98961 0.96280 0.97769 1.22309 0.98475 0.84380 0.93769 1.46495 1.36063 1.03973 1.48902 1.19565 1.03363 0.84773 1.21639 0.89178 1.25154 0.99464 0.98664 1.03473 1.69964 1.21346 1.29251 1.41043 0.85733 0.77197 0.82728 0.77331 1.22568 1.22655 1.20486 1.17564 0.86600 0.83468 0.77029 1.90959 1.14715 1.86844 1.48884 1.20305 0.94910 0.92996 1.21833 1.24827 0.96324 0.88133 0.95091 1.48927 1.08547 1.04623 1.50526 1.22601 0.76613 1.01921 1.04488 1.77025 0.91155 1.20173 1.22846 1.22870 0.95892 0.92692 1.02601 1.19948 0.82870 0.71651 0.97445 1.92963 1.93624 1.45761 1.86719 1.93279 1.73525 1.59864 1.89140 0.91589 0.88858 0.87501 0.92932 0.86513 0.90732 0.88634 0.96609 0.94314 0.95447 0.73272 0.88983 0.88137 0.84298 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 8.67 127.77 1.11 1.92 16 2 N -0.61 -18.00 2.88 -850.67 -2.45 -20.45 16 3 C 0.13 4.01 5.43 86.38 0.47 4.48 16 4 C 0.13 4.72 4.53 45.02 0.20 4.92 16 5 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 6 C -0.13 -4.44 7.86 31.25 0.25 -4.19 16 7 C 0.14 6.68 7.69 86.48 0.67 7.35 16 8 N -0.63 -33.10 3.58 -690.75 -2.47 -35.57 16 9 C -0.16 -10.01 9.46 84.03 0.79 -9.21 16 10 H 0.09 5.52 4.37 -2.91 -0.01 5.51 16 11 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 12 N -0.96 -64.52 11.27 21.65 0.24 -64.28 16 13 Si 0.94 55.34 29.42 68.60 2.02 57.36 16 14 H -0.30 -17.41 7.11 99.48 0.71 -16.70 16 15 H -0.30 -17.45 7.11 99.48 0.71 -16.74 16 16 H -0.28 -16.63 6.59 99.48 0.66 -15.98 16 17 C 0.56 21.50 6.08 86.67 0.53 22.03 16 18 O -0.54 -26.32 10.09 -4.04 -0.04 -26.37 16 19 C -0.29 -9.19 5.93 -20.15 -0.12 -9.31 16 20 C 0.11 2.16 9.40 84.27 0.79 2.95 16 21 N -0.35 -7.00 3.98 -367.78 -1.46 -8.47 16 22 C 0.08 0.61 11.44 127.77 1.46 2.07 16 23 N -0.29 -8.74 12.43 -46.68 -0.58 -9.32 16 24 C 0.03 0.93 6.89 43.51 0.30 1.23 16 25 C 0.34 12.49 5.70 71.23 0.41 12.90 16 26 F -0.21 -8.09 17.27 44.97 0.78 -7.31 16 27 F -0.18 -8.64 12.81 44.97 0.58 -8.07 16 28 H 0.07 0.86 7.38 -2.39 -0.02 0.84 16 29 H 0.09 0.93 5.31 -2.38 -0.01 0.92 16 30 H 0.11 0.93 7.91 -2.39 -0.02 0.91 16 31 H 0.05 2.19 7.14 -2.39 -0.02 2.17 16 32 H 0.12 2.51 7.99 -2.39 -0.02 2.49 16 33 H 0.07 2.64 8.10 -2.39 -0.02 2.62 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.04 2.21 6.86 -2.39 -0.02 2.19 16 37 H 0.24 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.25 2.40 4.41 -2.91 -0.01 2.39 16 39 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.14 -0.17 8.14 -2.38 -0.02 -0.19 16 42 H 0.16 4.47 8.14 -2.39 -0.02 4.45 16 Total: -1.00 -98.42 343.91 4.94 -93.47 By element: Atomic # 1 Polarization: -4.62 SS G_CDS: 1.02 Total: -3.60 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 7.32 Total: 32.59 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -6.72 Total: -138.09 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.04 Total: -26.37 kcal Atomic # 9 Polarization: -16.73 SS G_CDS: 1.35 Total: -15.38 kcal Atomic # 14 Polarization: 55.34 SS G_CDS: 2.02 Total: 57.36 kcal Total: -98.42 4.94 -93.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.934 kcal (2) G-P(sol) polarization free energy of solvation -98.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds