Wall clock time and date at job start Tue Mar 31 2020 15:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46499 * 119.99400 * 2 1 4 4 C 1.53000 * 109.47588 * 93.85323 * 3 2 1 5 5 H 1.08999 * 112.96603 * 67.60593 * 4 3 2 6 6 C 1.53947 * 113.76684 * 295.94049 * 4 3 2 7 7 C 1.53947 * 86.28755 * 222.08858 * 6 4 3 8 8 N 1.47580 * 113.77271 * 199.29559 * 4 3 2 9 9 C 1.36936 * 134.48826 * 318.92503 * 8 4 3 10 10 H 1.07992 * 120.00180 * 359.43374 * 9 8 4 11 11 C 1.38816 * 119.99501 * 179.43149 * 9 8 4 12 12 N 1.31620 * 120.00297 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99635 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47231 * 60.00473 * 13 11 9 15 15 H 1.48499 * 109.46889 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47271 * 300.00163 * 13 11 9 17 17 C 1.34770 * 120.00378 * 179.97438 * 2 1 3 18 18 O 1.21603 * 120.00148 * 185.49454 * 17 2 1 19 19 C 1.47434 * 119.99635 * 5.50628 * 17 2 1 20 20 C 1.38044 * 126.41473 * 359.27079 * 19 17 2 21 21 N 1.34264 * 107.41166 * 179.87438 * 20 19 17 22 22 C 1.46504 * 125.74824 * 180.14548 * 21 20 19 23 23 N 1.39928 * 108.49415 * 0.39788 * 21 20 19 24 24 C 1.30445 * 108.89995 * 359.74690 * 23 21 20 25 25 C 1.50699 * 125.99218 * 179.97438 * 24 23 21 26 26 F 1.39905 * 109.46854 * 30.04655 * 25 24 23 27 27 F 1.39906 * 109.47318 * 150.04356 * 25 24 23 28 28 H 1.08995 * 109.47111 * 245.95134 * 1 2 3 29 29 H 1.09001 * 109.46256 * 125.95349 * 1 2 3 30 30 H 1.09003 * 109.46962 * 5.95810 * 1 2 3 31 31 H 1.09007 * 109.46785 * 213.85138 * 3 2 1 32 32 H 1.09002 * 109.47568 * 333.84592 * 3 2 1 33 33 H 1.09005 * 113.73757 * 336.43138 * 6 4 3 34 34 H 1.09001 * 113.74755 * 107.63682 * 6 4 3 35 35 H 1.09009 * 113.76989 * 137.90786 * 7 6 4 36 36 H 1.09003 * 113.76833 * 269.18677 * 7 6 4 37 37 H 0.96999 * 119.99696 * 179.97438 * 12 11 9 38 38 H 1.07996 * 126.29254 * 0.03201 * 20 19 17 39 39 H 1.09003 * 109.46958 * 270.31586 * 22 21 20 40 40 H 1.08991 * 109.47407 * 30.32086 * 22 21 20 41 41 H 1.08999 * 109.46729 * 150.32018 * 22 21 20 42 42 H 1.08995 * 109.47388 * 270.04404 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.5364 1.6621 1.4392 5 1 3.2597 0.9922 1.9041 6 6 1.3005 1.9434 2.3130 7 6 2.0888 3.1449 2.8655 8 7 2.8586 3.0928 1.6047 9 6 3.5800 4.0040 0.8806 10 1 4.0698 3.7016 -0.0331 11 6 3.6816 5.3165 1.3210 12 7 3.0850 5.6850 2.4348 13 14 4.6650 6.5598 0.3328 14 1 4.0833 6.6820 -1.0280 15 1 4.6189 7.8796 1.0117 16 1 6.0752 6.1058 0.2293 17 6 2.1390 -1.1671 0.0005 18 8 3.3509 -1.1694 0.1014 19 6 1.4069 -2.4410 -0.1214 20 6 0.0391 -2.5931 -0.2287 21 7 -0.2129 -3.9087 -0.3209 22 6 -1.5380 -4.5191 -0.4540 23 7 1.0031 -4.5986 -0.2628 24 6 1.9736 -3.7352 -0.1441 25 6 3.4418 -4.0608 -0.0475 26 9 3.7049 -5.2414 -0.7504 27 9 4.1890 -3.0139 -0.5981 28 1 -0.3633 -0.4188 0.9384 29 1 -0.3632 -0.6034 -0.8319 30 1 -0.3633 1.0221 -0.1067 31 1 3.1183 1.1568 -0.5725 32 1 1.5802 2.0447 -0.4530 33 1 0.4149 2.2243 1.7429 34 1 1.1012 1.1691 3.0537 35 1 1.4899 4.0486 2.9789 36 1 2.6800 2.9125 3.7513 37 1 3.1563 6.6021 2.7427 38 1 -0.6934 -1.7996 -0.2392 39 1 -1.9454 -4.7224 0.5364 40 1 -2.2006 -3.8368 -0.9863 41 1 -1.4539 -5.4523 -1.0109 42 1 3.7168 -4.1920 0.9990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:10 Heat of formation + Delta-G solvation = 35.112942 kcal Electronic energy + Delta-G solvation = -28692.475091 eV Core-core repulsion = 24348.800631 eV Total energy + Delta-G solvation = -4343.674460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.145 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.84591 -46.82126 -41.83505 -39.36564 -37.63288 -35.29907 -34.05245 -32.15818 -31.22692 -28.82706 -28.27123 -27.78805 -26.90734 -25.45537 -23.31064 -22.93118 -21.90129 -20.82569 -19.66966 -18.93327 -17.50728 -17.37889 -17.04350 -16.75534 -16.41511 -16.02385 -15.95278 -15.62432 -15.25369 -14.65863 -14.25873 -14.04569 -13.72782 -13.57760 -13.54151 -13.32092 -13.25526 -12.96937 -12.73459 -12.69014 -12.38415 -12.20650 -11.84419 -11.43465 -11.35849 -11.19107 -10.96989 -10.75536 -10.67085 -10.43726 -9.96633 -9.79900 -9.73201 -9.62229 -9.42051 -9.02562 -8.72655 -8.29991 -6.80654 -5.69934 -3.01851 1.19585 1.64723 1.83623 3.14696 3.43688 3.44461 3.48772 3.49922 3.52175 3.91586 4.19582 4.31399 4.52138 4.62875 4.65718 4.75061 4.87946 4.89772 4.97971 5.03381 5.23416 5.27628 5.38518 5.47646 5.55150 5.63976 5.77275 5.90605 6.02262 6.22710 6.33078 6.35458 6.46797 6.68959 6.77197 6.89557 7.04832 7.31616 7.48903 7.62723 7.64690 8.05287 8.46168 9.11693 9.78161 10.68209 11.47032 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.003105 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.041247 B = 9014.313177 C = 9919.694856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.603 5.603 3 C 0.123 3.877 4 C 0.131 3.869 5 H 0.049 0.951 6 C -0.158 4.158 7 C 0.160 3.840 8 N -0.603 5.603 9 C -0.220 4.220 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.923 5.923 13 Si 0.909 3.091 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.285 1.285 17 C 0.580 3.420 18 O -0.516 6.516 19 C -0.252 4.252 20 C 0.075 3.925 21 N -0.357 5.357 22 C 0.095 3.905 23 N -0.265 5.265 24 C 0.049 3.951 25 C 0.356 3.644 26 F -0.198 7.198 27 F -0.158 7.158 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.214 0.786 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 -20.577 -4.548 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.336 5.336 3 C 0.000 4.000 4 C 0.023 3.977 5 H 0.067 0.933 6 C -0.196 4.196 7 C 0.035 3.965 8 N -0.329 5.329 9 C -0.348 4.348 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.570 5.570 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.212 1.212 17 C 0.367 3.633 18 O -0.392 6.392 19 C -0.267 4.267 20 C -0.074 4.074 21 N -0.137 5.137 22 C -0.046 4.046 23 N -0.087 5.087 24 C -0.120 4.120 25 C 0.300 3.700 26 F -0.179 7.179 27 F -0.139 7.139 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.229 0.771 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.276 -21.531 -4.699 25.728 hybrid contribution 0.624 1.525 -0.435 1.704 sum -12.652 -20.006 -5.134 24.222 Atomic orbital electron populations 1.22314 0.81095 1.03905 1.00343 1.47572 1.06193 1.06233 1.73627 1.21821 0.96908 0.82210 0.99081 1.22528 0.93986 0.88226 0.92967 0.93312 1.23741 0.97418 0.99328 0.99110 1.22218 0.90850 0.94952 0.88502 1.46093 1.60485 1.03148 1.23199 1.18996 1.24289 0.88531 1.02958 0.90362 1.24750 1.00991 0.97110 0.97598 1.69817 1.47426 1.17255 1.22515 0.86239 0.79990 0.80687 0.79097 1.21133 1.21675 1.21205 1.17191 0.86791 0.82110 0.77210 1.90891 1.12866 1.86430 1.48965 1.20235 0.92238 0.94092 1.20144 1.24672 0.97757 0.87365 0.97611 1.48482 1.06665 1.04730 1.53816 1.22066 0.77884 1.00616 1.03985 1.77120 0.88870 1.19699 1.22985 1.22941 0.96037 0.91661 1.01341 1.19381 0.83138 0.72748 0.94704 1.93013 1.94578 1.48260 1.82097 1.93220 1.76432 1.56525 1.87684 0.92009 0.91833 0.89633 0.90581 0.89838 0.91130 0.93528 0.90947 0.95868 0.93741 0.77059 0.89851 0.88668 0.88682 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 8.01 59.85 0.48 1.08 16 2 N -0.60 -8.59 2.77 -182.84 -0.51 -9.10 16 3 C 0.12 2.20 5.26 -4.04 -0.02 2.18 16 4 C 0.13 2.73 4.56 -66.86 -0.30 2.42 16 5 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 6 C -0.16 -2.91 7.27 -25.79 -0.19 -3.10 16 7 C 0.16 3.80 7.53 -2.85 -0.02 3.78 16 8 N -0.60 -15.47 3.59 -169.71 -0.61 -16.08 16 9 C -0.22 -6.20 10.51 -15.06 -0.16 -6.35 16 10 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.52 11.39 55.49 0.63 -26.89 16 13 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 C 0.58 9.19 7.59 -12.52 -0.10 9.10 16 18 O -0.52 -10.13 12.97 5.27 0.07 -10.06 16 19 C -0.25 -3.27 6.02 -105.06 -0.63 -3.91 16 20 C 0.07 0.66 9.53 -16.56 -0.16 0.50 16 21 N -0.36 -3.13 3.98 -67.60 -0.27 -3.40 16 22 C 0.10 0.34 11.44 59.85 0.68 1.02 16 23 N -0.26 -3.25 12.43 33.90 0.42 -2.83 16 24 C 0.05 0.66 6.89 -82.02 -0.56 0.09 16 25 C 0.36 4.70 5.65 36.01 0.20 4.90 16 26 F -0.20 -2.68 17.27 2.25 0.04 -2.64 16 27 F -0.16 -2.62 13.59 2.25 0.03 -2.59 16 28 H 0.06 0.46 7.42 -51.93 -0.39 0.07 16 29 H 0.06 0.40 5.41 -51.93 -0.28 0.12 16 30 H 0.08 0.74 7.49 -51.93 -0.39 0.36 16 31 H 0.08 1.52 7.63 -51.93 -0.40 1.13 16 32 H 0.08 1.47 7.80 -51.93 -0.40 1.07 16 33 H 0.07 1.19 7.71 -51.93 -0.40 0.79 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.87 7.15 -51.92 -0.37 1.50 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.21 1.07 4.09 -52.49 -0.21 0.85 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -37.26 352.46 -6.12 -43.38 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -5.35 Total: -3.89 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -0.87 Total: 11.38 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.33 Total: -58.30 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.07 Total: -5.23 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.26 -6.12 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.493 kcal (2) G-P(sol) polarization free energy of solvation -37.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds