Wall clock time and date at job start Tue Mar 31 2020 15:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46499 * 119.99400 * 2 1 4 4 C 1.53000 * 109.47588 * 93.85323 * 3 2 1 5 5 H 1.08999 * 112.96603 * 67.60593 * 4 3 2 6 6 C 1.53947 * 113.76684 * 295.94049 * 4 3 2 7 7 C 1.53947 * 86.28755 * 222.08858 * 6 4 3 8 8 N 1.47580 * 113.77271 * 199.29559 * 4 3 2 9 9 C 1.36936 * 134.48826 * 318.92503 * 8 4 3 10 10 H 1.07992 * 120.00180 * 359.43374 * 9 8 4 11 11 C 1.38816 * 119.99501 * 179.43149 * 9 8 4 12 12 N 1.31620 * 120.00297 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99635 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47231 * 60.00473 * 13 11 9 15 15 H 1.48499 * 109.46889 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47271 * 300.00163 * 13 11 9 17 17 C 1.34770 * 120.00378 * 179.97438 * 2 1 3 18 18 O 1.21603 * 120.00148 * 185.49454 * 17 2 1 19 19 C 1.47434 * 119.99635 * 5.50628 * 17 2 1 20 20 C 1.38044 * 126.41473 * 359.27079 * 19 17 2 21 21 N 1.34264 * 107.41166 * 179.87438 * 20 19 17 22 22 C 1.46504 * 125.74824 * 180.14548 * 21 20 19 23 23 N 1.39928 * 108.49415 * 0.39788 * 21 20 19 24 24 C 1.30445 * 108.89995 * 359.74690 * 23 21 20 25 25 C 1.50699 * 125.99218 * 179.97438 * 24 23 21 26 26 F 1.39905 * 109.46854 * 30.04655 * 25 24 23 27 27 F 1.39906 * 109.47318 * 150.04356 * 25 24 23 28 28 H 1.08995 * 109.47111 * 245.95134 * 1 2 3 29 29 H 1.09001 * 109.46256 * 125.95349 * 1 2 3 30 30 H 1.09003 * 109.46962 * 5.95810 * 1 2 3 31 31 H 1.09007 * 109.46785 * 213.85138 * 3 2 1 32 32 H 1.09002 * 109.47568 * 333.84592 * 3 2 1 33 33 H 1.09005 * 113.73757 * 336.43138 * 6 4 3 34 34 H 1.09001 * 113.74755 * 107.63682 * 6 4 3 35 35 H 1.09009 * 113.76989 * 137.90786 * 7 6 4 36 36 H 1.09003 * 113.76833 * 269.18677 * 7 6 4 37 37 H 0.96999 * 119.99696 * 179.97438 * 12 11 9 38 38 H 1.07996 * 126.29254 * 0.03201 * 20 19 17 39 39 H 1.09003 * 109.46958 * 270.31586 * 22 21 20 40 40 H 1.08991 * 109.47407 * 30.32086 * 22 21 20 41 41 H 1.08999 * 109.46729 * 150.32018 * 22 21 20 42 42 H 1.08995 * 109.47388 * 270.04404 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.5364 1.6621 1.4392 5 1 3.2597 0.9922 1.9041 6 6 1.3005 1.9434 2.3130 7 6 2.0888 3.1449 2.8655 8 7 2.8586 3.0928 1.6047 9 6 3.5800 4.0040 0.8806 10 1 4.0698 3.7016 -0.0331 11 6 3.6816 5.3165 1.3210 12 7 3.0850 5.6850 2.4348 13 14 4.6650 6.5598 0.3328 14 1 4.0833 6.6820 -1.0280 15 1 4.6189 7.8796 1.0117 16 1 6.0752 6.1058 0.2293 17 6 2.1390 -1.1671 0.0005 18 8 3.3509 -1.1694 0.1014 19 6 1.4069 -2.4410 -0.1214 20 6 0.0391 -2.5931 -0.2287 21 7 -0.2129 -3.9087 -0.3209 22 6 -1.5380 -4.5191 -0.4540 23 7 1.0031 -4.5986 -0.2628 24 6 1.9736 -3.7352 -0.1441 25 6 3.4418 -4.0608 -0.0475 26 9 3.7049 -5.2414 -0.7504 27 9 4.1890 -3.0139 -0.5981 28 1 -0.3633 -0.4188 0.9384 29 1 -0.3632 -0.6034 -0.8319 30 1 -0.3633 1.0221 -0.1067 31 1 3.1183 1.1568 -0.5725 32 1 1.5802 2.0447 -0.4530 33 1 0.4149 2.2243 1.7429 34 1 1.1012 1.1691 3.0537 35 1 1.4899 4.0486 2.9789 36 1 2.6800 2.9125 3.7513 37 1 3.1563 6.6021 2.7427 38 1 -0.6934 -1.7996 -0.2392 39 1 -1.9454 -4.7224 0.5364 40 1 -2.2006 -3.8368 -0.9863 41 1 -1.4539 -5.4523 -1.0109 42 1 3.7168 -4.1920 0.9990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:09 Heat of formation + Delta-G solvation = 8.885984 kcal Electronic energy + Delta-G solvation = -28693.612378 eV Core-core repulsion = 24348.800631 eV Total energy + Delta-G solvation = -4344.811747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.145 amu Computer time = 4.06 seconds Orbital eigenvalues (eV) -49.92036 -47.92795 -42.64921 -40.62168 -39.26397 -36.48317 -34.74135 -34.21698 -32.24723 -29.80647 -29.62987 -29.33900 -27.88375 -26.30491 -25.27438 -24.32887 -22.80475 -21.88274 -20.89858 -20.46448 -18.67775 -18.51705 -18.25816 -18.02933 -17.52776 -17.15169 -16.85078 -16.75404 -16.54626 -16.17708 -15.80943 -15.20455 -15.03322 -14.81642 -14.63440 -14.27878 -14.09102 -14.00312 -13.80598 -13.72954 -13.52507 -13.41131 -13.30682 -12.96374 -12.79136 -12.54273 -12.42889 -12.26952 -12.20355 -11.89773 -11.74767 -11.52721 -11.26834 -10.80482 -10.78621 -10.70096 -9.88997 -9.52215 -8.85749 -7.86589 -5.19416 0.46349 0.67641 1.21879 1.45919 1.49539 1.55168 2.03906 2.37364 2.51841 2.65623 3.05912 3.33129 3.34234 3.49201 3.76567 3.80170 3.91910 3.96469 4.06021 4.25144 4.31163 4.35712 4.38951 4.47556 4.55828 4.61559 4.68538 4.76222 4.84177 4.90735 4.93777 5.03562 5.04820 5.13105 5.27838 5.55646 5.61229 5.77401 5.79655 5.99268 6.23250 6.54743 6.96790 7.33147 7.65286 8.61911 9.29896 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.003105 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.041247 B = 9014.313177 C = 9919.694856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.600 5.600 3 C 0.141 3.859 4 C 0.130 3.870 5 H 0.023 0.977 6 C -0.118 4.118 7 C 0.150 3.850 8 N -0.629 5.629 9 C -0.230 4.230 10 H 0.077 0.923 11 C -0.065 4.065 12 N -0.952 5.952 13 Si 0.973 3.027 14 H -0.272 1.272 15 H -0.293 1.293 16 H -0.285 1.285 17 C 0.574 3.426 18 O -0.569 6.569 19 C -0.286 4.286 20 C 0.109 3.891 21 N -0.346 5.346 22 C 0.081 3.919 23 N -0.287 5.287 24 C 0.032 3.968 25 C 0.348 3.652 26 F -0.204 7.204 27 F -0.182 7.182 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.005 0.995 37 H 0.248 0.752 38 H 0.257 0.743 39 H 0.102 0.898 40 H 0.133 0.867 41 H 0.095 0.905 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.252 -21.665 -5.392 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.332 5.332 3 C 0.017 3.983 4 C 0.023 3.977 5 H 0.040 0.960 6 C -0.155 4.155 7 C 0.024 3.976 8 N -0.356 5.356 9 C -0.359 4.359 10 H 0.095 0.905 11 C -0.257 4.257 12 N -0.602 5.602 13 Si 0.802 3.198 14 H -0.198 1.198 15 H -0.219 1.219 16 H -0.212 1.212 17 C 0.364 3.636 18 O -0.449 6.449 19 C -0.301 4.301 20 C -0.042 4.042 21 N -0.125 5.125 22 C -0.057 4.057 23 N -0.110 5.110 24 C -0.136 4.136 25 C 0.292 3.708 26 F -0.185 7.185 27 F -0.163 7.163 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.023 0.977 37 H 0.057 0.943 38 H 0.272 0.728 39 H 0.121 0.879 40 H 0.151 0.849 41 H 0.114 0.886 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.955 -22.687 -5.562 28.864 hybrid contribution 1.656 1.738 -0.161 2.406 sum -15.299 -20.949 -5.723 26.564 Atomic orbital electron populations 1.22761 0.77384 1.05667 1.03164 1.47548 1.08348 1.04232 1.73093 1.21322 0.96409 0.84293 0.96309 1.22591 0.94470 0.85316 0.95323 0.95967 1.23476 0.96549 0.97011 0.98501 1.22223 0.91266 0.96398 0.87672 1.46513 1.60285 1.05023 1.23785 1.19326 1.23994 0.89411 1.03151 0.90537 1.25538 1.02451 0.98921 0.98835 1.69996 1.48920 1.17190 1.24052 0.85231 0.78413 0.78004 0.78180 1.19752 1.21889 1.21204 1.17661 0.86433 0.83293 0.76212 1.90863 1.15322 1.87266 1.51420 1.20031 0.93999 0.92366 1.23706 1.25178 0.96597 0.88174 0.94224 1.48953 1.07157 1.04843 1.51529 1.22610 0.75688 1.01609 1.05815 1.77070 0.90015 1.20351 1.23591 1.22880 0.95961 0.92344 1.02426 1.19728 0.83751 0.71814 0.95502 1.92987 1.94699 1.48428 1.82382 1.93164 1.77232 1.57777 1.88131 0.89345 0.88471 0.88723 0.93810 0.89056 0.88407 0.90427 0.93339 0.97703 0.94325 0.72819 0.87948 0.84858 0.88594 0.83102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 8.01 127.77 1.02 1.68 16 2 N -0.60 -15.89 2.77 -850.64 -2.35 -18.24 16 3 C 0.14 5.01 5.26 86.38 0.45 5.46 16 4 C 0.13 5.43 4.56 45.09 0.21 5.64 16 5 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.12 -4.09 7.27 31.25 0.23 -3.86 16 7 C 0.15 7.19 7.53 86.44 0.65 7.84 16 8 N -0.63 -32.87 3.59 -690.84 -2.48 -35.35 16 9 C -0.23 -13.23 10.51 84.03 0.88 -12.35 16 10 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 11 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 12 N -0.95 -58.10 11.39 21.65 0.25 -57.85 16 13 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 17 C 0.57 17.90 7.59 86.67 0.66 18.55 16 18 O -0.57 -23.32 12.97 -4.04 -0.05 -23.37 16 19 C -0.29 -6.89 6.02 -20.15 -0.12 -7.01 16 20 C 0.11 1.43 9.53 84.28 0.80 2.24 16 21 N -0.35 -4.68 3.98 -367.78 -1.46 -6.14 16 22 C 0.08 0.17 11.44 127.77 1.46 1.64 16 23 N -0.29 -6.52 12.43 -46.68 -0.58 -7.10 16 24 C 0.03 0.83 6.89 43.52 0.30 1.13 16 25 C 0.35 9.46 5.65 71.24 0.40 9.87 16 26 F -0.20 -5.66 17.27 44.97 0.78 -4.88 16 27 F -0.18 -6.41 13.59 44.97 0.61 -5.80 16 28 H 0.09 0.74 7.42 -2.39 -0.02 0.72 16 29 H 0.10 0.61 5.41 -2.39 -0.01 0.60 16 30 H 0.09 1.14 7.49 -2.39 -0.02 1.12 16 31 H 0.04 1.82 7.63 -2.38 -0.02 1.80 16 32 H 0.09 3.09 7.80 -2.39 -0.02 3.07 16 33 H 0.10 2.91 7.71 -2.38 -0.02 2.89 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 2.55 7.15 -2.38 -0.02 2.53 16 36 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.26 0.81 4.09 -2.91 -0.01 0.79 16 39 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.13 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.10 0.26 8.14 -2.39 -0.02 0.25 16 42 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -87.55 352.46 5.21 -82.34 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: 1.06 Total: 0.04 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 7.42 Total: 27.54 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -6.63 Total: -124.68 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 9 Polarization: -12.07 SS G_CDS: 1.39 Total: -10.69 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -87.55 5.21 -82.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.227 kcal (2) G-P(sol) polarization free energy of solvation -87.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.06 seconds