Wall clock time and date at job start Tue Mar 31 2020 15:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39920 * 125.87632 * 2 1 4 4 C 1.35323 * 107.93207 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.14424 * 179.97438 * 4 3 2 6 6 N 1.35218 * 107.71191 * 0.02562 * 4 3 2 7 7 C 1.40189 * 126.05654 * 179.97438 * 6 4 3 8 8 C 1.38833 * 120.06941 * 144.99481 * 7 6 4 9 9 C 1.38114 * 119.93514 * 180.02562 * 8 7 6 10 10 C 1.38274 * 120.06716 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.93531 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47064 * 90.00081 * 11 10 9 13 13 O 1.20826 * 119.99939 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00046 * 179.97438 * 12 11 10 15 15 C 1.45192 * 117.00018 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47109 * 180.02562 * 15 14 12 17 17 C 1.50702 * 109.47152 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99969 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99722 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00027 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47040 * 60.00342 * 21 19 17 23 23 H 1.48503 * 109.46997 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47259 * 300.00045 * 21 19 17 25 25 C 1.38276 * 120.13349 * 0.27635 * 10 9 8 26 26 C 1.38127 * 120.06635 * 359.45352 * 25 10 9 27 27 N 1.30876 * 125.88252 * 180.34408 * 2 1 3 28 28 H 1.09000 * 109.46635 * 90.00307 * 1 2 3 29 29 H 1.09001 * 109.47024 * 210.00551 * 1 2 3 30 30 H 1.08998 * 109.46912 * 330.00314 * 1 2 3 31 31 H 1.07997 * 126.03590 * 0.02562 * 3 2 1 32 32 H 1.08991 * 109.47141 * 270.02826 * 5 4 3 33 33 H 1.08999 * 109.47096 * 30.03173 * 5 4 3 34 34 H 1.09004 * 109.46567 * 150.02729 * 5 4 3 35 35 H 1.08010 * 120.03266 * 0.04663 * 8 7 6 36 36 H 1.08004 * 119.97013 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47152 * 330.00174 * 11 10 9 38 38 H 1.09001 * 109.46980 * 210.00275 * 11 10 9 39 39 H 1.09001 * 109.47630 * 300.00318 * 15 14 12 40 40 H 1.08998 * 109.47321 * 60.00129 * 15 14 12 41 41 H 1.09005 * 109.47066 * 299.99718 * 16 15 14 42 42 H 1.08998 * 109.47698 * 59.99951 * 16 15 14 43 43 H 0.97000 * 119.99888 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.97113 * 179.70416 * 25 10 9 45 45 H 1.07995 * 120.03610 * 180.27200 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1338 0.0000 4 6 3.6144 0.7168 -0.0006 5 6 4.8350 1.6008 -0.0013 6 7 3.6089 -0.6353 -0.0015 7 6 4.7389 -1.4651 -0.0028 8 6 4.7176 -2.6705 0.6856 9 6 5.8326 -3.4855 0.6829 10 6 6.9692 -3.1023 -0.0051 11 6 8.1840 -3.9942 -0.0065 12 6 8.1057 -4.9476 -1.1709 13 8 7.1607 -4.9067 -1.9228 14 8 9.0863 -5.8416 -1.3735 15 6 8.9449 -6.7279 -2.5148 16 6 10.1492 -7.6692 -2.5818 17 6 10.0027 -8.5887 -3.7668 18 1 9.1371 -8.5098 -4.4077 19 6 10.9739 -9.5306 -4.0328 20 7 12.0283 -9.6262 -3.2526 21 14 10.7920 -10.6707 -5.5012 22 1 10.7222 -9.8658 -6.7472 23 1 11.9610 -11.5843 -5.5663 24 1 9.5481 -11.4689 -5.3570 25 6 6.9953 -1.8999 -0.6874 26 6 5.8814 -1.0831 -0.6930 27 7 2.2741 -1.0604 -0.0064 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9917 2.1604 0.0004 32 1 5.1284 1.8141 -1.0291 33 1 4.6077 2.5345 0.5130 34 1 5.6516 1.0928 0.5118 35 1 3.8298 -2.9708 1.2225 36 1 5.8168 -4.4232 1.2186 37 1 8.2205 -4.5599 0.9245 38 1 9.0827 -3.3839 -0.0963 39 1 8.0318 -7.3137 -2.4091 40 1 8.8937 -6.1372 -3.4294 41 1 11.0626 -7.0837 -2.6875 42 1 10.2001 -8.2599 -1.6672 43 1 12.7118 -10.2886 -3.4399 44 1 7.8861 -1.6009 -1.2198 45 1 5.9008 -0.1461 -1.2297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051296954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:45 Heat of formation + Delta-G solvation = 0.581321 kcal Electronic energy + Delta-G solvation = -25920.845675 eV Core-core repulsion = 22097.610590 eV Total energy + Delta-G solvation = -3823.235085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.91826 -40.25638 -39.16384 -36.20053 -34.79395 -33.36972 -32.96401 -31.89614 -31.15581 -30.34227 -29.17413 -27.45448 -26.69710 -24.91586 -23.27596 -22.59170 -21.10406 -20.56541 -20.34581 -19.86526 -17.83507 -17.42391 -16.41142 -16.23270 -16.17862 -15.88992 -15.32727 -15.20502 -14.85919 -14.51334 -14.12428 -14.02214 -13.89103 -13.67444 -13.44542 -13.41418 -13.17297 -12.84367 -12.79283 -12.42178 -12.36377 -12.24893 -12.18888 -11.81750 -11.37337 -11.21402 -11.07535 -10.83268 -10.74825 -10.71545 -10.28922 -10.00849 -9.66235 -9.62770 -9.32984 -9.27819 -9.14288 -8.45443 -8.33629 -6.11751 -4.16191 0.57672 1.06667 1.72561 2.10491 2.40867 2.54634 3.06670 3.29289 3.33222 3.36386 3.58245 4.17918 4.23410 4.38444 4.40517 4.48419 4.60092 4.63910 4.92996 4.98450 5.02749 5.04786 5.17078 5.24180 5.24725 5.27195 5.28437 5.34291 5.37299 5.43510 5.46539 5.60379 5.69984 5.79232 5.91618 6.03260 6.07424 6.08501 6.26085 6.36334 6.45262 6.62035 6.93740 6.98470 7.40896 7.54007 7.60298 7.85144 8.16947 8.24850 8.89044 9.48198 10.99612 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024980 B = 0.001803 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.646520 B =15527.759850 C =16033.443449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.077 3.923 3 C -0.268 4.268 4 C 0.088 3.912 5 C -0.098 4.098 6 N -0.320 5.320 7 C 0.149 3.851 8 C -0.107 4.107 9 C -0.083 4.083 10 C -0.069 4.069 11 C -0.078 4.078 12 C 0.454 3.546 13 O -0.510 6.510 14 O -0.358 6.358 15 C 0.076 3.924 16 C 0.025 3.975 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.082 4.082 26 C -0.129 4.129 27 N -0.288 5.288 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.135 0.865 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 24.784 11.442 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.296 4.296 4 C -0.037 4.037 5 C -0.156 4.156 6 N -0.097 5.097 7 C 0.058 3.942 8 C -0.127 4.127 9 C -0.101 4.101 10 C -0.070 4.070 11 C -0.115 4.115 12 C 0.296 3.704 13 O -0.399 6.399 14 O -0.274 6.274 15 C 0.003 3.997 16 C -0.013 4.013 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.100 4.100 26 C -0.150 4.150 27 N -0.109 5.109 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.168 0.832 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.152 0.848 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.776 23.339 11.212 30.320 hybrid contribution -0.176 0.117 -0.999 1.021 sum -15.952 23.456 10.213 30.149 Atomic orbital electron populations 1.20199 0.86313 1.03417 1.03165 1.22480 0.97156 0.90725 0.98664 1.21160 0.90735 0.99915 1.17830 1.21235 0.97665 0.83928 1.00849 1.20644 0.93251 0.98171 1.03552 1.45727 1.04214 1.03502 1.56211 1.17441 0.84562 0.92316 0.99903 1.20908 0.99235 0.93309 0.99254 1.20945 0.91600 0.99047 0.98535 1.19443 0.94927 0.94697 0.97885 1.20319 0.98011 0.95863 0.97354 1.23336 0.80746 0.80531 0.85759 1.90669 1.33377 1.69445 1.46379 1.86516 1.45977 1.44650 1.50254 1.23642 1.02375 0.89909 0.83762 1.19170 0.91263 0.92701 0.98120 1.20946 1.06945 1.17415 1.11291 0.92329 1.24981 0.95026 0.97282 0.96835 1.69962 1.09803 1.35114 1.37926 0.86527 0.77649 0.80450 0.82642 1.20071 1.21098 1.20069 1.20868 0.98123 0.93384 0.97645 1.20987 0.92505 1.01588 0.99900 1.77510 0.85401 1.22462 1.25489 0.90337 0.90773 0.90279 0.83162 0.89831 0.89439 0.90415 0.84896 0.84839 0.86610 0.86605 0.92338 0.92343 0.95342 0.95336 0.92651 0.84753 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.01 0.38 -0.11 16 2 C 0.08 0.81 7.22 -82.37 -0.59 0.21 16 3 C -0.27 -2.49 10.65 -39.99 -0.43 -2.92 16 4 C 0.09 0.86 6.76 -82.14 -0.56 0.30 16 5 C -0.10 -0.58 8.60 36.01 0.31 -0.27 16 6 N -0.32 -3.95 3.73 -6.98 -0.03 -3.97 16 7 C 0.15 1.79 6.28 -83.59 -0.52 1.26 16 8 C -0.11 -1.27 9.77 -39.41 -0.38 -1.66 16 9 C -0.08 -0.92 9.69 -39.61 -0.38 -1.31 16 10 C -0.07 -0.77 4.38 -104.59 -0.46 -1.23 16 11 C -0.08 -0.85 5.94 -29.03 -0.17 -1.02 16 12 C 0.45 7.54 7.95 36.01 0.29 7.82 16 13 O -0.51 -10.04 15.78 -18.75 -0.30 -10.34 16 14 O -0.36 -6.93 10.22 -39.26 -0.40 -7.34 16 15 C 0.08 1.68 5.40 37.16 0.20 1.88 16 16 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 17 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C -0.08 -0.84 9.69 -39.61 -0.38 -1.23 16 26 C -0.13 -1.34 8.28 -39.40 -0.33 -1.67 16 27 N -0.29 -3.85 12.34 33.69 0.42 -3.44 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.08 0.40 7.74 -51.93 -0.40 0.00 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.46 6.89 -51.93 -0.36 0.10 16 35 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.12 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.12 0.98 8.08 -51.93 -0.42 0.56 16 39 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 40 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.13 1.09 6.09 -52.49 -0.32 0.77 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -34.99 387.49 -8.88 -43.88 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -6.53 Total: -2.54 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -3.60 Total: -12.99 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 1.13 Total: -32.93 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.70 Total: -17.67 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.99 -8.88 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051296954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.459 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds