Wall clock time and date at job start Tue Mar 31 2020 15:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39920 * 125.87632 * 2 1 4 4 C 1.35323 * 107.93207 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.14424 * 179.97438 * 4 3 2 6 6 N 1.35218 * 107.71191 * 0.02562 * 4 3 2 7 7 C 1.40189 * 126.05654 * 179.97438 * 6 4 3 8 8 C 1.38833 * 120.06941 * 144.99481 * 7 6 4 9 9 C 1.38114 * 119.93514 * 180.02562 * 8 7 6 10 10 C 1.38274 * 120.06716 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.93531 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47064 * 90.00081 * 11 10 9 13 13 O 1.20826 * 119.99939 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00046 * 179.97438 * 12 11 10 15 15 C 1.45192 * 117.00018 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47109 * 180.02562 * 15 14 12 17 17 C 1.50702 * 109.47152 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99969 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00115 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99722 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00027 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47040 * 60.00342 * 21 19 17 23 23 H 1.48503 * 109.46997 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47259 * 300.00045 * 21 19 17 25 25 C 1.38276 * 120.13349 * 0.27635 * 10 9 8 26 26 C 1.38127 * 120.06635 * 359.45352 * 25 10 9 27 27 N 1.30876 * 125.88252 * 180.34408 * 2 1 3 28 28 H 1.09000 * 109.46635 * 90.00307 * 1 2 3 29 29 H 1.09001 * 109.47024 * 210.00551 * 1 2 3 30 30 H 1.08998 * 109.46912 * 330.00314 * 1 2 3 31 31 H 1.07997 * 126.03590 * 0.02562 * 3 2 1 32 32 H 1.08991 * 109.47141 * 270.02826 * 5 4 3 33 33 H 1.08999 * 109.47096 * 30.03173 * 5 4 3 34 34 H 1.09004 * 109.46567 * 150.02729 * 5 4 3 35 35 H 1.08010 * 120.03266 * 0.04663 * 8 7 6 36 36 H 1.08004 * 119.97013 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.47152 * 330.00174 * 11 10 9 38 38 H 1.09001 * 109.46980 * 210.00275 * 11 10 9 39 39 H 1.09001 * 109.47630 * 300.00318 * 15 14 12 40 40 H 1.08998 * 109.47321 * 60.00129 * 15 14 12 41 41 H 1.09005 * 109.47066 * 299.99718 * 16 15 14 42 42 H 1.08998 * 109.47698 * 59.99951 * 16 15 14 43 43 H 0.97000 * 119.99888 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.97113 * 179.70416 * 25 10 9 45 45 H 1.07995 * 120.03610 * 180.27200 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1338 0.0000 4 6 3.6144 0.7168 -0.0006 5 6 4.8350 1.6008 -0.0013 6 7 3.6089 -0.6353 -0.0015 7 6 4.7389 -1.4651 -0.0028 8 6 4.7176 -2.6705 0.6856 9 6 5.8326 -3.4855 0.6829 10 6 6.9692 -3.1023 -0.0051 11 6 8.1840 -3.9942 -0.0065 12 6 8.1057 -4.9476 -1.1709 13 8 7.1607 -4.9067 -1.9228 14 8 9.0863 -5.8416 -1.3735 15 6 8.9449 -6.7279 -2.5148 16 6 10.1492 -7.6692 -2.5818 17 6 10.0027 -8.5887 -3.7668 18 1 9.1371 -8.5098 -4.4077 19 6 10.9739 -9.5306 -4.0328 20 7 12.0283 -9.6262 -3.2526 21 14 10.7920 -10.6707 -5.5012 22 1 10.7222 -9.8658 -6.7472 23 1 11.9610 -11.5843 -5.5663 24 1 9.5481 -11.4689 -5.3570 25 6 6.9953 -1.8999 -0.6874 26 6 5.8814 -1.0831 -0.6930 27 7 2.2741 -1.0604 -0.0064 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9917 2.1604 0.0004 32 1 5.1284 1.8141 -1.0291 33 1 4.6077 2.5345 0.5130 34 1 5.6516 1.0928 0.5118 35 1 3.8298 -2.9708 1.2225 36 1 5.8168 -4.4232 1.2186 37 1 8.2205 -4.5599 0.9245 38 1 9.0827 -3.3839 -0.0963 39 1 8.0318 -7.3137 -2.4091 40 1 8.8937 -6.1372 -3.4294 41 1 11.0626 -7.0837 -2.6875 42 1 10.2001 -8.2599 -1.6672 43 1 12.7118 -10.2886 -3.4399 44 1 7.8861 -1.6009 -1.2198 45 1 5.9008 -0.1461 -1.2297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051296954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:44 Heat of formation + Delta-G solvation = -17.903831 kcal Electronic energy + Delta-G solvation = -25921.647251 eV Core-core repulsion = 22097.610590 eV Total energy + Delta-G solvation = -3824.036661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.66847 -41.55443 -40.13553 -37.70782 -35.62335 -35.44883 -33.69532 -32.77647 -32.21799 -31.92068 -29.98772 -28.06595 -27.73272 -26.71569 -24.08480 -23.71061 -22.83120 -21.74286 -21.23323 -20.61067 -19.00289 -18.58880 -18.13576 -17.69402 -17.44616 -16.85931 -16.54097 -16.34796 -16.05654 -15.58743 -15.14702 -14.80300 -14.70702 -14.56570 -14.39601 -14.36298 -14.18435 -14.02628 -13.76615 -13.37070 -13.31839 -13.17313 -13.01541 -12.93082 -12.92332 -12.64466 -12.56465 -12.51515 -12.13315 -11.87714 -11.57757 -11.53395 -11.46645 -11.36635 -10.79725 -10.61308 -10.09455 -9.89825 -9.14395 -8.27662 -6.40744 -0.25415 0.24929 0.94609 1.22539 1.35993 1.40317 1.43443 1.51422 1.70311 1.82999 2.38968 2.64713 3.06509 3.47673 3.52957 3.62128 3.76380 3.82312 3.92415 4.01512 4.20127 4.24150 4.25694 4.27412 4.43069 4.49336 4.52878 4.63106 4.63727 4.69923 4.71049 4.75883 4.80849 4.91544 4.99024 5.02249 5.10691 5.13571 5.27788 5.30213 5.43067 5.46951 5.55757 5.63904 5.73518 5.75968 6.06280 6.18645 6.64892 6.71352 6.78486 7.28803 8.84416 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024980 B = 0.001803 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.646520 B =15527.759850 C =16033.443449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.069 3.931 3 C -0.276 4.276 4 C 0.080 3.920 5 C -0.097 4.097 6 N -0.337 5.337 7 C 0.135 3.865 8 C -0.126 4.126 9 C -0.087 4.087 10 C -0.083 4.083 11 C -0.065 4.065 12 C 0.453 3.547 13 O -0.543 6.543 14 O -0.364 6.364 15 C 0.091 3.909 16 C 0.030 3.970 17 C -0.553 4.553 18 H 0.062 0.938 19 C 0.008 3.992 20 N -0.924 5.924 21 Si 0.972 3.028 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.081 4.081 26 C -0.130 4.130 27 N -0.342 5.342 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.179 0.821 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.268 0.732 44 H 0.158 0.842 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.887 26.484 11.089 32.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.097 4.097 3 C -0.304 4.304 4 C -0.044 4.044 5 C -0.154 4.154 6 N -0.114 5.114 7 C 0.044 3.956 8 C -0.145 4.145 9 C -0.106 4.106 10 C -0.083 4.083 11 C -0.102 4.102 12 C 0.298 3.702 13 O -0.433 6.433 14 O -0.280 6.280 15 C 0.018 3.982 16 C -0.007 4.007 17 C -0.591 4.591 18 H 0.080 0.920 19 C -0.192 4.192 20 N -0.563 5.563 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.100 4.100 26 C -0.150 4.150 27 N -0.163 5.163 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.196 0.804 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.077 0.923 44 H 0.175 0.825 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.897 25.065 10.877 31.611 hybrid contribution -0.212 -0.302 -0.825 0.903 sum -16.109 24.763 10.052 31.205 Atomic orbital electron populations 1.20339 0.84120 1.04461 1.04012 1.23165 0.98696 0.90710 0.97177 1.21588 0.90444 1.00888 1.17468 1.21978 0.99388 0.83394 0.99611 1.20793 0.91621 0.98242 1.04782 1.45876 1.03902 1.04449 1.57146 1.17742 0.85222 0.92527 1.00101 1.20958 0.99395 0.94077 1.00115 1.21131 0.91474 0.99339 0.98636 1.19557 0.94974 0.95263 0.98533 1.20468 0.99250 0.94986 0.95503 1.24471 0.79246 0.79913 0.86576 1.90660 1.34439 1.70227 1.48009 1.86511 1.47419 1.45108 1.49011 1.23103 1.00171 0.89915 0.84998 1.18982 0.92131 0.92852 0.96721 1.21350 1.07359 1.18260 1.12120 0.91952 1.25935 0.94508 0.98858 0.99860 1.70079 1.10588 1.35937 1.39699 0.85405 0.77976 0.78250 0.78851 1.19124 1.20330 1.19243 1.21203 0.98851 0.92947 0.96957 1.21214 0.91878 1.02383 0.99517 1.77443 0.86454 1.24442 1.27957 0.89455 0.91192 0.87748 0.80363 0.88361 0.87222 0.90403 0.85782 0.83732 0.83960 0.83350 0.92646 0.92422 0.97259 0.97393 0.92313 0.82476 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.45 71.24 0.74 -0.15 16 2 C 0.07 1.44 7.22 43.11 0.31 1.75 16 3 C -0.28 -4.76 10.65 22.00 0.23 -4.53 16 4 C 0.08 1.48 6.76 41.37 0.28 1.76 16 5 C -0.10 -0.93 8.60 71.24 0.61 -0.32 16 6 N -0.34 -8.36 3.73 -176.00 -0.66 -9.01 16 7 C 0.14 3.26 6.28 38.09 0.24 3.50 16 8 C -0.13 -3.07 9.77 22.38 0.22 -2.85 16 9 C -0.09 -1.92 9.69 22.25 0.22 -1.71 16 10 C -0.08 -1.72 4.38 -19.85 -0.09 -1.81 16 11 C -0.07 -1.27 5.94 29.10 0.17 -1.10 16 12 C 0.45 14.53 7.95 71.24 0.57 15.10 16 13 O -0.54 -21.16 15.78 21.97 0.35 -20.81 16 14 O -0.36 -13.95 10.22 -51.41 -0.53 -14.47 16 15 C 0.09 4.10 5.40 71.98 0.39 4.49 16 16 C 0.03 1.62 5.35 29.85 0.16 1.78 16 17 C -0.55 -31.49 9.11 25.60 0.23 -31.26 16 18 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 19 C 0.01 0.44 5.46 84.66 0.46 0.90 16 20 N -0.92 -55.03 13.29 21.45 0.28 -54.75 16 21 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C -0.08 -1.52 9.69 22.25 0.22 -1.31 16 26 C -0.13 -2.52 8.28 22.39 0.19 -2.34 16 27 N -0.34 -9.44 12.34 -47.33 -0.58 -10.02 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.10 0.67 7.74 -2.39 -0.02 0.65 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.76 6.89 -2.38 -0.02 0.75 16 35 H 0.12 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.14 2.06 8.08 -2.39 -0.02 2.04 16 38 H 0.15 1.97 8.08 -2.39 -0.02 1.95 16 39 H 0.06 2.49 8.13 -2.39 -0.02 2.48 16 40 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 41 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 45 H 0.15 2.22 6.09 -2.91 -0.02 2.20 16 Total: -1.00 -77.70 387.49 7.03 -70.67 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.99 Total: 10.74 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 5.15 Total: -18.08 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -0.96 Total: -73.78 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.18 Total: -35.28 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -77.70 7.03 -70.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051296954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.770 kcal (2) G-P(sol) polarization free energy of solvation -77.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds