Wall clock time and date at job start Tue Mar 31 2020 15:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31496 * 119.70891 * 2 1 4 4 C 1.33076 * 121.59657 * 180.28748 * 3 2 1 5 5 C 1.47394 * 119.59353 * 179.75475 * 4 3 2 6 6 C 1.36210 * 125.95174 * 359.69758 * 5 4 3 7 7 C 1.40704 * 106.72645 * 179.75409 * 6 5 4 8 8 C 1.34916 * 107.06018 * 0.40734 * 7 6 5 9 9 O 1.34163 * 108.71040 * 359.59111 * 8 7 6 10 10 C 1.39864 * 120.81219 * 359.47935 * 4 3 2 11 11 C 1.36861 * 119.32878 * 0.24970 * 10 4 3 12 12 C 1.39705 * 119.70243 * 179.77090 * 2 1 3 13 13 C 1.47567 * 120.42720 * 359.95274 * 12 2 1 14 14 O 1.21593 * 119.99999 * 305.43153 * 13 12 2 15 15 N 1.34780 * 120.00054 * 125.43091 * 13 12 2 16 16 C 1.46498 * 120.00221 * 183.51582 * 15 13 12 17 17 C 1.50701 * 109.46994 * 90.00093 * 16 15 13 18 18 H 1.07995 * 120.00340 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99851 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99936 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46892 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47134 * 119.99372 * 21 19 17 24 24 H 1.48499 * 109.47250 * 239.99798 * 21 19 17 25 25 C 1.46494 * 119.99761 * 3.51771 * 15 13 12 26 26 C 1.53000 * 109.47258 * 114.21082 * 25 15 13 27 27 C 1.53000 * 109.47460 * 234.20843 * 25 15 13 28 28 H 1.08995 * 109.47014 * 264.67630 * 1 2 3 29 29 H 1.09003 * 109.46948 * 24.67561 * 1 2 3 30 30 H 1.08996 * 109.47517 * 144.67416 * 1 2 3 31 31 H 1.07995 * 126.63449 * 359.97438 * 6 5 4 32 32 H 1.07991 * 126.46628 * 180.28244 * 7 6 5 33 33 H 1.07996 * 125.63872 * 179.85206 * 8 7 6 34 34 H 1.08004 * 120.33443 * 180.27412 * 10 4 3 35 35 H 1.08000 * 120.73658 * 179.97438 * 11 10 4 36 36 H 1.08997 * 109.47117 * 210.00422 * 16 15 13 37 37 H 1.09005 * 109.46860 * 330.00076 * 16 15 13 38 38 H 0.97004 * 119.99919 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.47434 * 354.21344 * 25 15 13 40 40 H 1.08993 * 109.47278 * 59.99862 * 26 25 15 41 41 H 1.09003 * 109.47561 * 180.02562 * 26 25 15 42 42 H 1.09006 * 109.47255 * 299.99609 * 26 25 15 43 43 H 1.09005 * 109.46499 * 59.99808 * 27 25 15 44 44 H 1.08994 * 109.47636 * 180.02562 * 27 25 15 45 45 H 1.09002 * 109.47206 * 300.00640 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1421 0.0000 4 6 3.4887 1.1860 -0.0057 5 6 4.1740 2.4909 -0.0109 6 6 3.5695 3.7115 -0.0164 7 6 4.5974 4.6724 -0.0142 8 6 5.7673 4.0005 -0.0168 9 8 5.5077 2.6842 -0.0113 10 6 4.2444 0.0090 -0.0010 11 6 3.6025 -1.1997 0.0044 12 6 2.1992 -1.2135 0.0049 13 6 1.4643 -2.4931 0.0110 14 8 0.6328 -2.7125 0.8706 15 7 1.7148 -3.4187 -0.9362 16 6 0.9318 -4.6562 -0.9763 17 6 -0.2798 -4.4560 -1.8497 18 1 -0.4494 -3.5024 -2.3276 19 6 -1.1719 -5.4902 -2.0389 20 7 -0.9651 -6.6516 -1.4574 21 14 -2.6733 -5.2423 -3.1221 22 1 -2.6753 -3.8564 -3.6557 23 1 -2.6347 -6.2073 -4.2501 24 1 -3.9038 -5.4656 -2.3214 25 6 2.7700 -3.1872 -1.9256 26 6 3.8916 -4.2079 -1.7233 27 6 2.1910 -3.3381 -3.3337 28 1 -0.3633 -0.0953 1.0232 29 1 -0.3633 0.9339 -0.4290 30 1 -0.3634 -0.8384 -0.5942 31 1 2.5070 3.9045 -0.0181 32 1 4.4732 5.7451 -0.0130 33 1 6.7501 4.4482 -0.0183 34 1 5.3235 0.0536 -0.0012 35 1 4.1634 -2.1226 0.0077 36 1 1.5443 -5.4607 -1.3834 37 1 0.6131 -4.9173 0.0329 38 1 -1.5924 -7.3793 -1.5907 39 1 3.1688 -2.1802 -1.8027 40 1 3.4930 -5.2149 -1.8462 41 1 4.6770 -4.0354 -2.4592 42 1 4.3043 -4.1004 -0.7202 43 1 1.3919 -2.6108 -3.4777 44 1 2.9762 -3.1663 -4.0698 45 1 1.7922 -4.3451 -3.4566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066645637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:45 Heat of formation + Delta-G solvation = 16.992567 kcal Electronic energy + Delta-G solvation = -28045.690276 eV Core-core repulsion = 24223.166836 eV Total energy + Delta-G solvation = -3822.523440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.76632 -40.66534 -38.69633 -36.10561 -33.56942 -33.30413 -33.02158 -32.46578 -30.91955 -29.49990 -28.15547 -26.94823 -26.68611 -24.63909 -23.05659 -22.50795 -21.52665 -21.34909 -20.75243 -18.73893 -18.16238 -17.05671 -16.59854 -16.40152 -16.32183 -15.88806 -15.35455 -14.62209 -14.38204 -14.21481 -13.96177 -13.80065 -13.53858 -13.20229 -13.09428 -13.00472 -12.69468 -12.47270 -12.40142 -12.31505 -12.23460 -11.94024 -11.68947 -11.64975 -11.25995 -10.97414 -10.92567 -10.70705 -10.48714 -10.21602 -10.10329 -9.84275 -9.74777 -9.56759 -9.49057 -9.02106 -8.45777 -8.15505 -7.73958 -6.06972 -4.10634 0.34453 1.18193 1.71991 2.43269 2.46812 3.25455 3.27894 3.36439 3.39940 3.66944 3.89824 4.14128 4.40811 4.42348 4.66297 4.77072 4.79453 4.81128 5.01685 5.17809 5.22777 5.28049 5.46511 5.51741 5.53498 5.60571 5.65512 5.75418 5.77301 5.90620 5.94513 5.98502 6.07008 6.11783 6.20302 6.26210 6.26356 6.33270 6.55715 6.57195 6.82390 6.92930 7.03608 7.41065 7.48311 7.78949 7.89422 8.20087 8.31737 8.82440 8.98663 9.53769 11.01253 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.003125 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.981166 B = 8958.917963 C = 9513.034531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.184 3.816 3 N -0.470 5.470 4 C 0.208 3.792 5 C 0.020 3.980 6 C -0.152 4.152 7 C -0.219 4.219 8 C -0.028 4.028 9 O -0.168 6.168 10 C -0.165 4.165 11 C -0.044 4.044 12 C -0.160 4.160 13 C 0.552 3.448 14 O -0.527 6.527 15 N -0.581 5.581 16 C 0.246 3.754 17 C -0.520 4.520 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.124 3.876 26 C -0.163 4.163 27 C -0.154 4.154 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.207 0.793 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.262 0.738 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.612 17.114 0.143 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.045 3.955 3 N -0.181 5.181 4 C 0.072 3.928 5 C -0.031 4.031 6 C -0.172 4.172 7 C -0.238 4.238 8 C -0.097 4.097 9 O -0.063 6.063 10 C -0.185 4.185 11 C -0.070 4.070 12 C -0.165 4.165 13 C 0.337 3.663 14 O -0.405 6.405 15 N -0.312 5.312 16 C 0.127 3.873 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.020 3.980 26 C -0.221 4.221 27 C -0.211 4.211 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.224 0.776 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.816 17.288 0.605 22.138 hybrid contribution -0.274 -0.494 -0.656 0.866 sum 13.542 16.794 -0.051 21.574 Atomic orbital electron populations 1.20807 0.87278 1.03722 1.04361 1.21268 0.97209 0.85797 0.91228 1.67357 1.07341 1.29382 1.13998 1.18286 0.89019 0.88741 0.96767 1.19749 0.80207 0.93570 1.09544 1.21957 1.01152 0.90586 1.03514 1.21861 0.92176 1.01003 1.08776 1.24218 1.00616 0.79615 1.05204 1.84008 1.24000 1.27013 1.71319 1.21678 1.01471 0.92016 1.03380 1.21469 0.93062 0.98813 0.93608 1.21251 0.94662 0.96269 1.04314 1.17827 0.82881 0.82841 0.82710 1.90794 1.34017 1.78545 1.37130 1.48313 1.34682 1.20529 1.27644 1.19308 0.89873 0.79303 0.98805 1.21442 1.07201 0.98275 1.28981 0.92250 1.24917 0.97939 0.95113 0.96093 1.69939 1.37093 1.02747 1.43538 0.86495 0.82944 0.78159 0.80171 1.19753 1.21038 1.20916 1.21204 0.88128 0.98690 0.90027 1.22205 0.97839 1.01041 1.01044 1.22091 1.00111 1.04801 0.94141 0.89263 0.90545 0.89493 0.82448 0.83014 0.77629 0.84053 0.83769 0.94617 0.93740 0.92790 0.90468 0.91178 0.92014 0.93004 0.92503 0.93260 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.14 36.01 0.33 -1.33 16 2 C 0.18 3.04 6.82 -82.19 -0.56 2.48 16 3 N -0.47 -7.28 9.94 -5.81 -0.06 -7.34 16 4 C 0.21 2.93 6.74 -82.99 -0.56 2.37 16 5 C 0.02 0.25 7.03 -36.59 -0.26 -0.01 16 6 C -0.15 -1.73 10.58 -39.38 -0.42 -2.14 16 7 C -0.22 -1.92 10.88 -39.83 -0.43 -2.35 16 8 C -0.03 -0.22 12.08 29.55 0.36 0.14 16 9 O -0.17 -1.84 10.37 4.80 0.05 -1.79 16 10 C -0.17 -2.09 9.69 -39.47 -0.38 -2.47 16 11 C -0.04 -0.61 7.49 -39.29 -0.29 -0.90 16 12 C -0.16 -2.72 4.84 -104.76 -0.51 -3.22 16 13 C 0.55 11.45 6.13 -12.45 -0.08 11.37 16 14 O -0.53 -12.92 15.76 5.28 0.08 -12.84 16 15 N -0.58 -11.88 2.38 -168.68 -0.40 -12.29 16 16 C 0.25 6.11 4.47 -5.19 -0.02 6.09 16 17 C -0.52 -13.94 7.85 -34.44 -0.27 -14.21 16 18 H 0.06 1.59 7.52 -52.49 -0.39 1.20 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 C 0.12 2.01 2.51 -67.93 -0.17 1.84 16 26 C -0.16 -2.27 9.03 37.16 0.34 -1.93 16 27 C -0.15 -2.55 8.34 37.16 0.31 -2.24 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.56 7.18 -51.93 -0.37 1.19 16 31 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.14 1.42 7.88 -52.48 -0.41 1.01 16 35 H 0.14 1.74 6.34 -52.49 -0.33 1.41 16 36 H 0.04 0.90 6.71 -51.93 -0.35 0.55 16 37 H 0.04 1.27 7.37 -51.93 -0.38 0.88 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.08 1.14 4.64 -51.93 -0.24 0.90 16 40 H 0.07 1.10 6.90 -51.93 -0.36 0.74 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 43 H 0.06 1.01 7.96 -51.93 -0.41 0.59 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.55 6.94 -51.93 -0.36 1.19 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -32.15 373.39 -7.79 -39.94 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.09 Total: 2.39 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.72 Total: -4.93 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.28 Total: -44.68 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.13 Total: -14.63 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.15 -7.79 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.933 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds