Wall clock time and date at job start Tue Mar 31 2020 15:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31496 * 119.70891 * 2 1 4 4 C 1.33076 * 121.59657 * 180.28748 * 3 2 1 5 5 C 1.47394 * 119.59353 * 179.75475 * 4 3 2 6 6 C 1.36210 * 125.95174 * 359.69758 * 5 4 3 7 7 C 1.40704 * 106.72645 * 179.75409 * 6 5 4 8 8 C 1.34916 * 107.06018 * 0.40734 * 7 6 5 9 9 O 1.34163 * 108.71040 * 359.59111 * 8 7 6 10 10 C 1.39864 * 120.81219 * 359.47935 * 4 3 2 11 11 C 1.36861 * 119.32878 * 0.24970 * 10 4 3 12 12 C 1.39705 * 119.70243 * 179.77090 * 2 1 3 13 13 C 1.47567 * 120.42720 * 359.95274 * 12 2 1 14 14 O 1.21593 * 119.99999 * 305.43153 * 13 12 2 15 15 N 1.34780 * 120.00054 * 125.43091 * 13 12 2 16 16 C 1.46498 * 120.00221 * 183.51582 * 15 13 12 17 17 C 1.50701 * 109.46994 * 90.00093 * 16 15 13 18 18 H 1.07995 * 120.00340 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99851 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99936 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46892 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47134 * 119.99372 * 21 19 17 24 24 H 1.48499 * 109.47250 * 239.99798 * 21 19 17 25 25 C 1.46494 * 119.99761 * 3.51771 * 15 13 12 26 26 C 1.53000 * 109.47258 * 114.21082 * 25 15 13 27 27 C 1.53000 * 109.47460 * 234.20843 * 25 15 13 28 28 H 1.08995 * 109.47014 * 264.67630 * 1 2 3 29 29 H 1.09003 * 109.46948 * 24.67561 * 1 2 3 30 30 H 1.08996 * 109.47517 * 144.67416 * 1 2 3 31 31 H 1.07995 * 126.63449 * 359.97438 * 6 5 4 32 32 H 1.07991 * 126.46628 * 180.28244 * 7 6 5 33 33 H 1.07996 * 125.63872 * 179.85206 * 8 7 6 34 34 H 1.08004 * 120.33443 * 180.27412 * 10 4 3 35 35 H 1.08000 * 120.73658 * 179.97438 * 11 10 4 36 36 H 1.08997 * 109.47117 * 210.00422 * 16 15 13 37 37 H 1.09005 * 109.46860 * 330.00076 * 16 15 13 38 38 H 0.97004 * 119.99919 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.47434 * 354.21344 * 25 15 13 40 40 H 1.08993 * 109.47278 * 59.99862 * 26 25 15 41 41 H 1.09003 * 109.47561 * 180.02562 * 26 25 15 42 42 H 1.09006 * 109.47255 * 299.99609 * 26 25 15 43 43 H 1.09005 * 109.46499 * 59.99808 * 27 25 15 44 44 H 1.08994 * 109.47636 * 180.02562 * 27 25 15 45 45 H 1.09002 * 109.47206 * 300.00640 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1421 0.0000 4 6 3.4887 1.1860 -0.0057 5 6 4.1740 2.4909 -0.0109 6 6 3.5695 3.7115 -0.0164 7 6 4.5974 4.6724 -0.0142 8 6 5.7673 4.0005 -0.0168 9 8 5.5077 2.6842 -0.0113 10 6 4.2444 0.0090 -0.0010 11 6 3.6025 -1.1997 0.0044 12 6 2.1992 -1.2135 0.0049 13 6 1.4643 -2.4931 0.0110 14 8 0.6328 -2.7125 0.8706 15 7 1.7148 -3.4187 -0.9362 16 6 0.9318 -4.6562 -0.9763 17 6 -0.2798 -4.4560 -1.8497 18 1 -0.4494 -3.5024 -2.3276 19 6 -1.1719 -5.4902 -2.0389 20 7 -0.9651 -6.6516 -1.4574 21 14 -2.6733 -5.2423 -3.1221 22 1 -2.6753 -3.8564 -3.6557 23 1 -2.6347 -6.2073 -4.2501 24 1 -3.9038 -5.4656 -2.3214 25 6 2.7700 -3.1872 -1.9256 26 6 3.8916 -4.2079 -1.7233 27 6 2.1910 -3.3381 -3.3337 28 1 -0.3633 -0.0953 1.0232 29 1 -0.3633 0.9339 -0.4290 30 1 -0.3634 -0.8384 -0.5942 31 1 2.5070 3.9045 -0.0181 32 1 4.4732 5.7451 -0.0130 33 1 6.7501 4.4482 -0.0183 34 1 5.3235 0.0536 -0.0012 35 1 4.1634 -2.1226 0.0077 36 1 1.5443 -5.4607 -1.3834 37 1 0.6131 -4.9173 0.0329 38 1 -1.5924 -7.3793 -1.5907 39 1 3.1688 -2.1802 -1.8027 40 1 3.4930 -5.2149 -1.8462 41 1 4.6770 -4.0354 -2.4592 42 1 4.3043 -4.1004 -0.7202 43 1 1.3919 -2.6108 -3.4777 44 1 2.9762 -3.1663 -4.0698 45 1 1.7922 -4.3451 -3.4566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066645637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:45 Heat of formation + Delta-G solvation = -2.126348 kcal Electronic energy + Delta-G solvation = -28046.519334 eV Core-core repulsion = 24223.166836 eV Total energy + Delta-G solvation = -3823.352498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.52647 -41.94949 -40.16430 -37.69213 -35.07723 -34.48087 -34.32261 -33.61125 -32.50453 -30.46273 -29.78403 -28.37730 -27.98604 -25.91820 -24.76056 -23.62056 -22.86163 -22.26944 -21.66863 -20.21964 -19.00797 -18.63142 -18.49602 -17.73101 -17.14296 -17.03289 -16.69761 -16.36634 -15.77725 -15.46802 -15.31487 -15.15929 -14.76250 -14.49345 -14.28877 -14.06023 -13.85713 -13.72423 -13.63935 -13.46796 -13.37121 -13.35517 -13.23601 -13.11428 -12.88460 -12.76304 -12.58230 -12.27393 -12.12345 -11.84614 -11.54774 -11.18897 -11.01248 -10.86538 -10.61279 -10.56161 -10.47456 -9.51042 -9.06899 -8.19773 -6.31102 -0.73484 0.06477 0.85776 1.36267 1.38736 1.49467 1.59935 1.65538 1.78245 2.21259 2.41585 2.64917 3.10720 3.19610 3.38992 3.42428 3.60011 3.91538 3.92891 4.05594 4.08297 4.23531 4.27945 4.34573 4.42277 4.48882 4.59040 4.65619 4.79509 4.83975 4.89072 4.94546 4.97745 4.99558 5.01343 5.03762 5.09191 5.11618 5.22350 5.41302 5.42661 5.51041 5.53840 5.62365 5.84031 6.05352 6.09646 6.61891 6.69550 6.77034 7.23380 7.40973 8.88006 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.003125 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.981166 B = 8958.917963 C = 9513.034531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.174 3.826 3 N -0.482 5.482 4 C 0.210 3.790 5 C -0.017 4.017 6 C -0.154 4.154 7 C -0.233 4.233 8 C -0.004 4.004 9 O -0.174 6.174 10 C -0.154 4.154 11 C -0.033 4.033 12 C -0.185 4.185 13 C 0.551 3.449 14 O -0.580 6.580 15 N -0.584 5.584 16 C 0.265 3.735 17 C -0.525 4.525 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.928 5.928 21 Si 0.958 3.042 22 H -0.267 1.267 23 H -0.272 1.272 24 H -0.284 1.284 25 C 0.118 3.882 26 C -0.158 4.158 27 C -0.149 4.149 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.152 0.848 32 H 0.178 0.822 33 H 0.254 0.746 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.030 0.970 37 H -0.002 1.002 38 H 0.265 0.735 39 H 0.101 0.899 40 H 0.045 0.955 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.089 0.911 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.791 19.939 -1.111 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.036 3.964 3 N -0.193 5.193 4 C 0.074 3.926 5 C -0.067 4.067 6 C -0.174 4.174 7 C -0.251 4.251 8 C -0.072 4.072 9 O -0.069 6.069 10 C -0.174 4.174 11 C -0.058 4.058 12 C -0.190 4.190 13 C 0.339 3.661 14 O -0.461 6.461 15 N -0.313 5.313 16 C 0.144 3.856 17 C -0.563 4.563 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.568 5.568 21 Si 0.784 3.216 22 H -0.192 1.192 23 H -0.197 1.197 24 H -0.210 1.210 25 C 0.015 3.985 26 C -0.216 4.216 27 C -0.207 4.207 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.170 0.830 32 H 0.195 0.805 33 H 0.270 0.730 34 H 0.193 0.807 35 H 0.182 0.818 36 H 0.048 0.952 37 H 0.017 0.983 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.064 0.936 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.107 0.893 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.024 20.125 -0.677 26.368 hybrid contribution -1.103 -1.151 -0.242 1.612 sum 15.922 18.974 -0.919 24.786 Atomic orbital electron populations 1.20692 0.87842 1.03450 1.03606 1.21214 0.97231 0.86169 0.91823 1.67365 1.08467 1.28498 1.14936 1.18699 0.88671 0.90343 0.94894 1.19568 0.81186 0.93059 1.12859 1.22200 1.01701 0.91293 1.02228 1.22200 0.91613 1.02061 1.09248 1.25217 1.02304 0.78349 1.01348 1.84009 1.22893 1.28600 1.71446 1.21967 1.02935 0.90665 1.01812 1.21651 0.91469 1.00341 0.92387 1.20896 0.95978 0.94033 1.08078 1.18385 0.82292 0.83816 0.81642 1.90746 1.36480 1.79736 1.39131 1.48302 1.35213 1.19142 1.28686 1.18735 0.89966 0.81306 0.95572 1.21633 1.07986 0.97902 1.28808 0.92864 1.25740 1.00833 0.94857 0.97448 1.70050 1.38297 1.03555 1.44937 0.85497 0.79073 0.78462 0.78609 1.19173 1.19714 1.20970 1.21558 0.87544 1.00804 0.88545 1.22177 0.97655 0.98671 1.03051 1.22036 1.00811 1.02255 0.95556 0.89865 0.88521 0.92346 0.83010 0.80500 0.73047 0.80669 0.81751 0.95191 0.98346 0.92580 0.88135 0.93591 0.88182 0.91853 0.94343 0.89259 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.32 9.14 71.24 0.65 -2.67 16 2 C 0.17 5.88 6.82 42.96 0.29 6.18 16 3 N -0.48 -14.72 9.94 -172.30 -1.71 -16.44 16 4 C 0.21 5.55 6.74 41.76 0.28 5.84 16 5 C -0.02 -0.39 7.03 24.21 0.17 -0.22 16 6 C -0.15 -3.17 10.58 22.40 0.24 -2.94 16 7 C -0.23 -3.21 10.88 22.11 0.24 -2.97 16 8 C 0.00 -0.04 12.08 67.06 0.81 0.77 16 9 O -0.17 -3.15 10.37 -5.75 -0.06 -3.21 16 10 C -0.15 -3.46 9.69 22.34 0.22 -3.25 16 11 C -0.03 -0.86 7.49 22.46 0.17 -0.69 16 12 C -0.18 -6.35 4.84 -19.95 -0.10 -6.45 16 13 C 0.55 24.01 6.13 86.70 0.53 24.54 16 14 O -0.58 -30.55 15.76 -4.01 -0.06 -30.61 16 15 N -0.58 -24.88 2.38 -805.84 -1.92 -26.80 16 16 C 0.26 14.00 4.47 85.63 0.38 14.38 16 17 C -0.52 -29.46 7.85 25.60 0.20 -29.26 16 18 H 0.05 2.99 7.52 -2.91 -0.02 2.97 16 19 C 0.01 0.57 5.46 84.66 0.46 1.03 16 20 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 21 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 25 C 0.12 3.76 2.51 44.99 0.11 3.87 16 26 C -0.16 -4.11 9.03 71.98 0.65 -3.46 16 27 C -0.15 -4.87 8.34 71.98 0.60 -4.27 16 28 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.06 2.27 7.18 -2.39 -0.02 2.25 16 31 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.18 1.45 8.06 -2.92 -0.02 1.43 16 33 H 0.25 0.22 8.06 -2.91 -0.02 0.20 16 34 H 0.18 2.73 7.88 -2.91 -0.02 2.71 16 35 H 0.17 3.51 6.34 -2.91 -0.02 3.49 16 36 H 0.03 1.60 6.71 -2.39 -0.02 1.59 16 37 H 0.00 -0.10 7.37 -2.38 -0.02 -0.11 16 38 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.10 2.77 4.64 -2.39 -0.01 2.76 16 40 H 0.04 1.43 6.90 -2.39 -0.02 1.41 16 41 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 1.50 7.22 -2.38 -0.02 1.48 16 43 H 0.04 1.37 7.96 -2.38 -0.02 1.35 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.05 1.97 6.94 -2.39 -0.02 1.96 16 Total: -1.00 -75.57 373.39 5.47 -70.10 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.01 Total: 14.98 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.91 Total: 0.42 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -3.35 Total: -98.51 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.12 Total: -33.82 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -75.57 5.47 -70.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.971 kcal (2) G-P(sol) polarization free energy of solvation -75.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds