Wall clock time and date at job start Tue Mar 31 2020 15:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34451 * 125.45389 * 2 1 4 4 C 1.46717 * 106.38732 * 179.97438 * 3 2 1 5 5 C 1.47183 * 127.01805 * 179.97438 * 4 3 2 6 6 O 1.21660 * 119.99704 * 142.11028 * 5 4 3 7 7 N 1.34770 * 120.00398 * 322.10943 * 5 4 3 8 8 C 1.36980 * 120.00337 * 183.87679 * 7 5 4 9 9 H 1.07993 * 120.00127 * 138.44006 * 8 7 5 10 10 C 1.38965 * 119.99482 * 318.43900 * 8 7 5 11 11 N 1.31415 * 119.99810 * 158.84420 * 10 8 7 12 12 Si 1.86804 * 120.00549 * 338.84376 * 10 8 7 13 13 H 1.48492 * 109.47355 * 95.62374 * 12 10 8 14 14 H 1.48502 * 109.47195 * 215.62939 * 12 10 8 15 15 H 1.48500 * 109.46825 * 335.62416 * 12 10 8 16 16 C 1.46504 * 119.99861 * 3.87487 * 7 5 4 17 17 C 1.52999 * 117.49697 * 182.43571 * 16 7 5 18 18 C 1.53002 * 60.00264 * 252.51128 * 17 16 7 19 19 C 1.37842 * 105.96048 * 359.78557 * 4 3 2 20 20 C 1.50706 * 125.89957 * 180.21265 * 19 4 3 21 21 N 1.34702 * 108.19968 * 0.34842 * 19 4 3 22 22 C 1.46497 * 124.81875 * 179.89467 * 21 19 4 23 23 C 1.50703 * 109.47319 * 269.72746 * 22 21 19 24 24 C 1.34508 * 125.79215 * 90.00046 * 23 22 21 25 25 C 1.41377 * 106.84069 * 180.02562 * 24 23 22 26 26 C 1.34512 * 106.84515 * 359.97438 * 25 24 23 27 27 O 1.34307 * 125.78540 * 269.68987 * 23 22 21 28 28 H 1.08998 * 109.47197 * 270.02912 * 1 2 3 29 29 H 1.09005 * 109.47165 * 30.02499 * 1 2 3 30 30 H 1.08997 * 109.46850 * 150.02352 * 1 2 3 31 31 H 1.08001 * 126.80831 * 359.97438 * 3 2 1 32 32 H 0.97003 * 120.00182 * 180.02562 * 11 10 8 33 33 H 1.09002 * 115.54858 * 328.15026 * 16 7 5 34 34 H 1.08997 * 117.50083 * 0.02562 * 17 16 7 35 35 H 1.09000 * 117.49374 * 145.02177 * 17 16 7 36 36 H 1.08995 * 117.50005 * 252.51933 * 18 17 16 37 37 H 1.08998 * 117.49729 * 107.48610 * 18 17 16 38 38 H 1.09002 * 109.46575 * 270.16861 * 20 19 4 39 39 H 1.08993 * 109.46875 * 30.16171 * 20 19 4 40 40 H 1.09001 * 109.47270 * 150.16767 * 20 19 4 41 41 H 1.09004 * 109.46987 * 149.72331 * 22 21 19 42 42 H 1.08997 * 109.47192 * 29.72731 * 22 21 19 43 43 H 1.08004 * 126.57878 * 0.03323 * 24 23 22 44 44 H 1.08008 * 126.57705 * 179.97438 * 25 24 23 45 45 H 1.08000 * 125.79334 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2869 1.0952 0.0000 4 6 3.6736 0.6159 0.0006 5 6 4.8950 1.4372 0.0003 6 8 5.8636 1.0869 0.6479 7 7 4.9405 2.5771 -0.7172 8 6 6.1022 3.3000 -0.7816 9 1 6.4176 3.7329 -1.7193 10 6 6.8749 3.4764 0.3599 11 7 8.1473 3.7861 0.2507 12 14 6.1048 3.2734 2.0497 13 1 6.3499 1.8944 2.5430 14 1 6.7101 4.2505 2.9902 15 1 4.6423 3.5142 1.9593 16 6 3.7475 3.0430 -1.4285 17 6 3.8786 4.3130 -2.2716 18 6 3.1053 4.3474 -0.9518 19 6 3.5989 -0.7604 0.0059 20 6 4.7700 -1.7090 0.0130 21 7 2.2984 -1.1112 0.0006 22 6 1.8040 -2.4902 0.0015 23 6 1.6348 -2.9642 -1.4190 24 6 2.5735 -3.5799 -2.1600 25 6 1.9914 -3.8449 -3.4208 26 6 0.7315 -3.3759 -3.3748 27 8 0.5192 -2.8487 -2.1579 28 1 -0.3633 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9579 2.1239 -0.0004 32 1 8.6868 3.9089 1.0475 33 1 3.0840 2.2604 -1.7964 34 1 4.8526 4.8016 -2.2974 35 1 3.3014 4.3660 -3.1947 36 1 2.0193 4.4230 -1.0067 37 1 3.5704 4.8588 -0.1091 38 1 5.0571 -1.9393 -1.0129 39 1 5.6101 -1.2451 0.5299 40 1 4.4898 -2.6284 0.5272 41 1 0.8434 -2.5315 0.5152 42 1 2.5190 -3.1322 0.5160 43 1 3.5790 -3.8248 -1.8510 44 1 2.4670 -4.3308 -4.2600 45 1 0.0113 -3.4201 -4.1784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:19 Heat of formation + Delta-G solvation = 55.567708 kcal Electronic energy + Delta-G solvation = -28840.322229 eV Core-core repulsion = 25019.471532 eV Total energy + Delta-G solvation = -3820.850696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.57870 -42.29248 -40.45165 -37.97269 -35.02011 -34.74926 -33.80643 -33.48391 -33.29485 -30.68052 -30.01385 -27.87264 -26.31472 -25.49104 -23.58847 -23.13264 -22.75908 -22.13842 -21.62771 -21.11696 -19.67889 -18.59957 -18.38173 -17.73434 -17.34019 -17.17512 -16.56922 -16.30688 -15.84835 -15.62769 -15.34480 -15.10742 -14.85060 -14.58516 -14.38252 -14.17930 -14.10259 -13.79838 -13.76092 -13.58724 -13.50112 -13.42867 -13.04607 -12.93653 -12.86189 -12.57134 -12.48806 -12.21423 -12.15674 -12.01476 -11.57750 -11.19693 -10.90054 -10.75650 -10.37906 -9.61459 -9.42821 -9.34281 -8.82067 -8.41900 -6.11809 0.57280 0.89780 1.23912 1.36477 1.48171 1.54594 1.60579 1.99520 2.13829 2.31852 2.57474 2.80161 3.00191 3.28120 3.58158 3.81006 3.81520 3.95164 4.07055 4.10096 4.19035 4.20274 4.23373 4.28837 4.35394 4.39839 4.54104 4.65484 4.74168 4.84064 4.85473 4.86124 4.94454 4.98719 5.05344 5.06055 5.11768 5.16715 5.24308 5.38275 5.44817 5.52990 5.72809 5.87043 5.92047 6.09835 6.21754 6.40902 6.82617 6.95830 7.40039 7.98728 8.66248 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015991 B = 0.004148 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.533979 B = 6748.976407 C = 7143.016348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 C -0.185 4.185 4 C -0.243 4.243 5 C 0.522 3.478 6 O -0.594 6.594 7 N -0.446 5.446 8 C -0.340 4.340 9 H 0.072 0.928 10 C 0.051 3.949 11 N -0.908 5.908 12 Si 0.966 3.034 13 H -0.280 1.280 14 H -0.308 1.308 15 H -0.275 1.275 16 C 0.052 3.948 17 C -0.170 4.170 18 C -0.183 4.183 19 C 0.080 3.920 20 C -0.087 4.087 21 N -0.430 5.430 22 C 0.180 3.820 23 C -0.055 4.055 24 C -0.195 4.195 25 C -0.235 4.235 26 C -0.026 4.026 27 O -0.181 6.181 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.272 0.728 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.153 0.847 44 H 0.164 0.836 45 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.870 -15.858 -5.197 28.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C -0.209 4.209 4 C -0.253 4.253 5 C 0.316 3.684 6 O -0.481 6.481 7 N -0.165 5.165 8 C -0.467 4.467 9 H 0.090 0.910 10 C -0.153 4.153 11 N -0.546 5.546 12 Si 0.798 3.202 13 H -0.208 1.208 14 H -0.238 1.238 15 H -0.200 1.200 16 C -0.052 4.052 17 C -0.208 4.208 18 C -0.221 4.221 19 C -0.035 4.035 20 C -0.144 4.144 21 N -0.108 5.108 22 C 0.060 3.940 23 C -0.105 4.105 24 C -0.215 4.215 25 C -0.254 4.254 26 C -0.094 4.094 27 O -0.077 6.077 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.166 0.834 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.150 0.850 42 H 0.157 0.843 43 H 0.171 0.829 44 H 0.182 0.818 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -22.630 -16.142 -4.723 28.195 hybrid contribution 1.099 0.369 0.551 1.283 sum -21.531 -15.773 -4.172 27.015 Atomic orbital electron populations 1.20421 0.84881 1.04364 1.03751 1.20651 0.94942 0.84558 1.08393 1.21992 0.89795 0.98685 1.10439 1.20502 0.93181 0.93129 1.18440 1.18092 0.87400 0.80807 0.82107 1.90509 1.39513 1.72463 1.45639 1.43094 1.09237 1.19269 1.44865 1.18640 0.98474 1.33779 0.95785 0.91015 1.25842 0.94731 0.92690 1.02030 1.69838 1.06286 1.47276 1.31186 0.85466 0.78451 0.75910 0.80353 1.20774 1.23789 1.20010 1.22132 0.90377 0.91345 1.01349 1.23188 1.01976 1.00057 0.95535 1.23297 1.00207 1.01002 0.97634 1.20462 0.85777 0.93183 1.04115 1.20445 0.93605 0.97284 1.03077 1.43603 1.03954 1.06430 1.56793 1.20405 1.04482 0.80073 0.89037 1.22527 0.86162 1.05880 0.95934 1.21983 1.00929 1.03615 0.95015 1.22185 0.96046 1.07667 0.99514 1.24830 0.99359 0.98825 0.86383 1.83996 1.36507 1.63767 1.23444 0.89560 0.89083 0.90554 0.83404 0.91892 0.84582 0.90446 0.85535 0.85065 0.91649 0.90585 0.91863 0.88345 0.84997 0.84344 0.82908 0.81849 0.74503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 9.80 71.24 0.70 -0.54 16 2 C 0.02 0.59 6.84 40.98 0.28 0.87 16 3 C -0.19 -6.25 8.63 23.62 0.20 -6.05 16 4 C -0.24 -10.24 5.57 -18.81 -0.10 -10.34 16 5 C 0.52 27.83 5.87 86.59 0.51 28.34 16 6 O -0.59 -36.14 10.68 -4.22 -0.05 -36.19 16 7 N -0.45 -23.52 2.50 -617.04 -1.54 -25.07 16 8 C -0.34 -20.71 8.67 84.06 0.73 -19.98 16 9 H 0.07 4.59 7.04 -2.91 -0.02 4.57 16 10 C 0.05 3.27 4.81 84.93 0.41 3.68 16 11 N -0.91 -59.77 13.96 21.67 0.30 -59.47 16 12 Si 0.97 55.84 24.79 68.60 1.70 57.54 16 13 H -0.28 -17.21 6.24 99.48 0.62 -16.59 16 14 H -0.31 -17.03 7.11 99.48 0.71 -16.32 16 15 H -0.27 -15.31 7.11 99.48 0.71 -14.61 16 16 C 0.05 2.13 4.63 44.99 0.21 2.34 16 17 C -0.17 -6.13 9.80 30.59 0.30 -5.83 16 18 C -0.18 -6.42 9.80 30.60 0.30 -6.12 16 19 C 0.08 2.75 6.93 42.03 0.29 3.04 16 20 C -0.09 -2.69 9.88 71.24 0.70 -1.99 16 21 N -0.43 -11.08 2.67 -498.56 -1.33 -12.41 16 22 C 0.18 2.99 5.90 85.63 0.50 3.50 16 23 C -0.05 -1.02 6.90 24.83 0.17 -0.85 16 24 C -0.20 -3.73 10.81 22.19 0.24 -3.49 16 25 C -0.24 -3.89 10.91 22.19 0.24 -3.65 16 26 C -0.03 -0.37 12.09 66.97 0.81 0.43 16 27 O -0.18 -3.28 10.59 -2.56 -0.03 -3.31 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.08 1.06 7.52 -2.39 -0.02 1.04 16 31 H 0.15 4.72 6.55 -2.91 -0.02 4.71 16 32 H 0.27 16.91 8.31 -92.71 -0.77 16.14 16 33 H 0.14 4.97 6.06 -2.39 -0.01 4.95 16 34 H 0.08 3.31 6.52 -2.39 -0.02 3.29 16 35 H 0.13 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 37 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.50 6.67 -2.39 -0.02 2.49 16 40 H 0.10 2.13 6.93 -2.39 -0.02 2.11 16 41 H 0.13 1.50 7.50 -2.38 -0.02 1.48 16 42 H 0.14 1.75 6.87 -2.39 -0.02 1.73 16 43 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 44 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.24 1.34 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -86.89 366.47 6.47 -80.42 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.92 Total: 15.13 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 6.49 Total: -16.64 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -2.57 Total: -96.94 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.07 Total: -39.49 kcal Atomic # 14 Polarization: 55.84 SS G_CDS: 1.70 Total: 57.54 kcal Total: -86.89 6.47 -80.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.983 kcal (2) G-P(sol) polarization free energy of solvation -86.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds