Wall clock time and date at job start Tue Mar 31 2020 15:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.92867 * 2 1 4 4 C 1.38105 * 120.07238 * 179.97438 * 3 2 1 5 5 C 1.38903 * 119.92582 * 359.97332 * 4 3 2 6 6 N 1.39809 * 120.07181 * 180.02562 * 5 4 3 7 7 C 1.46500 * 120.00133 * 188.09260 * 6 5 4 8 8 C 1.50696 * 109.47239 * 263.91685 * 7 6 5 9 9 H 1.08000 * 120.00014 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99889 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00077 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00206 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47348 * 89.99892 * 12 10 8 14 14 H 1.48496 * 109.47120 * 210.00168 * 12 10 8 15 15 H 1.48503 * 109.46901 * 330.00307 * 12 10 8 16 16 C 1.34783 * 120.00133 * 8.09304 * 6 5 4 17 17 O 1.21595 * 119.99669 * 5.82175 * 16 6 5 18 18 C 1.47457 * 120.00084 * 185.81495 * 16 6 5 19 19 C 1.36855 * 126.94630 * 174.32978 * 18 16 6 20 20 C 1.41249 * 103.84739 * 180.02562 * 19 18 16 21 21 C 1.50700 * 126.70502 * 180.02562 * 20 19 18 22 22 C 1.53005 * 109.47031 * 84.99948 * 21 20 19 23 23 C 1.53003 * 109.47036 * 325.00238 * 21 20 19 24 24 N 1.30136 * 106.59057 * 0.26278 * 20 19 18 25 25 O 1.20888 * 111.98854 * 359.53141 * 24 20 19 26 26 C 1.38904 * 119.85469 * 0.27764 * 5 4 3 27 27 C 1.38098 * 119.92277 * 359.47014 * 26 5 4 28 28 H 1.09004 * 109.47140 * 89.99971 * 1 2 3 29 29 H 1.09003 * 109.47602 * 210.00122 * 1 2 3 30 30 H 1.09000 * 109.47326 * 330.00738 * 1 2 3 31 31 H 1.07993 * 119.96145 * 359.97210 * 3 2 1 32 32 H 1.07997 * 120.03662 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47215 * 23.91900 * 7 6 5 34 34 H 1.09001 * 109.46880 * 143.91521 * 7 6 5 35 35 H 0.96996 * 119.99890 * 179.97438 * 11 10 8 36 36 H 1.08003 * 128.07920 * 0.02562 * 19 18 16 37 37 H 1.08995 * 109.47474 * 205.00154 * 21 20 19 38 38 H 1.08995 * 109.47161 * 300.00398 * 22 21 20 39 39 H 1.08997 * 109.47086 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.46480 * 60.00014 * 22 21 20 41 41 H 1.08997 * 109.47209 * 299.99953 * 23 21 20 42 42 H 1.09005 * 109.46614 * 59.99931 * 23 21 20 43 43 H 1.09001 * 109.47010 * 179.97438 * 23 21 20 44 44 H 1.07992 * 120.03394 * 179.70161 * 26 5 4 45 45 H 1.08005 * 119.96351 * 180.23073 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2019 0.0005 5 6 4.2739 -0.0002 0.0016 6 7 5.6720 -0.0002 0.0027 7 6 6.4046 -1.2564 -0.1747 8 6 6.7851 -1.8108 1.1739 9 1 6.5092 -1.2803 2.0732 10 6 7.4864 -2.9948 1.2595 11 7 7.8189 -3.4785 2.4365 12 14 7.9642 -3.9121 -0.2961 13 1 9.2963 -3.4447 -0.7570 14 1 8.0211 -5.3689 -0.0140 15 1 6.9551 -3.6517 -1.3539 16 6 6.3459 1.1555 0.1670 17 8 5.7424 2.1804 0.4197 18 6 7.8148 1.1768 0.0405 19 6 8.6272 2.2777 0.0714 20 6 9.9251 1.7448 -0.0921 21 6 11.2178 2.5183 -0.1332 22 6 11.7165 2.7544 1.2939 23 6 10.9847 3.8649 -0.8213 24 7 9.7860 0.4559 -0.2053 25 8 8.6280 0.1172 -0.1293 26 6 3.5778 -1.2022 -0.0036 27 6 2.1969 -1.1985 0.0011 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6551 2.1327 -0.0005 32 1 4.1162 2.1382 0.0001 33 1 5.7731 -1.9745 -0.6978 34 1 7.3060 -1.0718 -0.7592 35 1 8.3120 -4.3116 2.4967 36 1 8.3425 3.3125 0.1925 37 1 11.9635 1.9504 -0.6894 38 1 10.9708 3.3223 1.8500 39 1 12.6517 3.3135 1.2641 40 1 11.8825 1.7951 1.7840 41 1 10.6294 3.6967 -1.8379 42 1 10.2389 4.4328 -0.2650 43 1 11.9196 4.4245 -0.8507 44 1 4.1160 -2.1384 -0.0077 45 1 1.6550 -2.1328 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072784745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:12 Heat of formation + Delta-G solvation = 65.545092 kcal Electronic energy + Delta-G solvation = -28212.942355 eV Core-core repulsion = 24392.524311 eV Total energy + Delta-G solvation = -3820.418045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.59650 -40.38741 -38.18940 -36.53112 -35.69518 -32.83796 -32.26972 -31.99478 -30.89934 -30.52709 -28.28186 -27.29991 -26.41803 -23.87441 -23.77031 -23.10102 -21.78692 -21.50371 -20.56216 -19.13699 -17.51281 -17.26871 -16.91198 -16.85269 -16.09775 -15.47253 -14.82122 -14.80650 -14.37260 -14.18701 -14.15439 -13.78180 -13.51820 -13.47709 -13.35484 -13.24554 -12.88440 -12.54448 -12.28155 -12.12585 -12.02405 -11.86820 -11.61855 -11.49210 -11.36979 -11.34312 -11.12487 -10.80530 -10.70976 -10.70032 -10.42461 -9.82322 -9.79451 -9.42309 -9.24229 -9.20756 -8.73289 -8.48906 -7.29123 -6.23682 -4.27288 1.05513 1.83730 1.86317 2.37066 2.93482 3.20962 3.24845 3.29772 3.34526 3.55061 4.15619 4.26260 4.28600 4.55183 4.90723 5.01224 5.07000 5.12037 5.19822 5.20289 5.26750 5.41596 5.48132 5.49635 5.53293 5.59894 5.71588 5.72987 5.77857 5.82370 5.88170 5.92609 6.01975 6.11696 6.14853 6.16340 6.20733 6.30925 6.52832 6.55683 6.75236 6.80584 6.98406 7.05984 7.30212 7.56456 7.68596 8.19541 8.32607 8.55431 8.79315 9.33221 10.88605 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.004709 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.044138 B = 5944.508337 C = 8129.785393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.164 4.164 5 C 0.161 3.839 6 N -0.515 5.515 7 C 0.192 3.808 8 C -0.541 4.541 9 H 0.079 0.921 10 C 0.088 3.912 11 N -0.884 5.884 12 Si 0.863 3.137 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.605 3.395 17 O -0.516 6.516 18 C -0.062 4.062 19 C -0.162 4.162 20 C 0.004 3.996 21 C -0.014 4.014 22 C -0.144 4.144 23 C -0.144 4.144 24 N -0.350 5.350 25 O 0.159 5.841 26 C -0.136 4.136 27 C -0.101 4.101 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.171 0.829 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.268 0.732 36 H 0.177 0.823 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.138 0.862 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 10.778 -7.235 13.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.183 4.183 5 C 0.066 3.934 6 N -0.232 5.232 7 C 0.072 3.928 8 C -0.579 4.579 9 H 0.097 0.903 10 C -0.117 4.117 11 N -0.521 5.521 12 Si 0.688 3.312 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.188 1.188 16 C 0.394 3.606 17 O -0.395 6.395 18 C -0.129 4.129 19 C -0.184 4.184 20 C -0.153 4.153 21 C -0.033 4.033 22 C -0.202 4.202 23 C -0.202 4.202 24 N -0.047 5.047 25 O 0.084 5.916 26 C -0.156 4.156 27 C -0.120 4.120 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.187 0.813 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.194 0.806 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.156 0.844 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.335 10.117 -7.188 12.482 hybrid contribution 0.073 -0.206 -0.388 0.446 sum -1.262 9.911 -7.576 12.539 Atomic orbital electron populations 1.20683 0.91827 1.02163 1.01564 1.19831 0.95633 0.93431 1.03599 1.20875 0.93716 0.97030 1.00717 1.22331 0.94397 0.99400 1.02173 1.17928 0.81690 0.94609 0.99140 1.45523 1.04565 1.09258 1.63898 1.20390 0.92150 0.80453 0.99786 1.21092 1.37487 1.08194 0.91126 0.90253 1.24729 0.94489 0.96583 0.95892 1.69870 1.38194 1.20794 1.23249 0.87043 0.80409 0.79735 0.83963 1.19120 1.20703 1.18797 1.16667 0.83172 0.83391 0.77381 1.90519 1.65814 1.33888 1.49311 1.23890 0.93669 0.87556 1.07758 1.22625 0.90690 1.00513 1.04619 1.23466 0.96885 0.90217 1.04726 1.19478 0.90741 0.94987 0.98135 1.21832 1.01070 1.02409 0.94907 1.21842 1.02216 0.95478 1.00633 1.73751 0.99093 1.15576 1.16265 1.85443 1.10509 1.31492 1.64201 1.21074 0.94171 0.97434 1.02914 1.20757 0.93294 0.97304 1.00637 0.91910 0.92022 0.92101 0.86441 0.81281 0.93145 0.93410 0.92212 0.80560 0.89485 0.92084 0.91775 0.92137 0.92284 0.91959 0.91737 0.84420 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.00 0.36 -0.79 16 2 C -0.12 -1.81 5.88 -104.59 -0.62 -2.43 16 3 C -0.10 -1.62 9.69 -39.61 -0.38 -2.00 16 4 C -0.16 -2.96 8.97 -39.38 -0.35 -3.32 16 5 C 0.16 3.19 6.48 -83.73 -0.54 2.65 16 6 N -0.51 -10.89 2.70 -115.93 -0.31 -11.20 16 7 C 0.19 4.32 3.28 -5.20 -0.02 4.30 16 8 C -0.54 -14.34 9.30 -34.44 -0.32 -14.66 16 9 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 10 C 0.09 2.39 5.47 -17.82 -0.10 2.29 16 11 N -0.88 -25.87 13.96 55.43 0.77 -25.09 16 12 Si 0.86 20.11 27.47 -169.99 -4.67 15.44 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 16 C 0.61 12.44 7.52 -12.50 -0.09 12.34 16 17 O -0.52 -10.52 13.43 5.28 0.07 -10.45 16 18 C -0.06 -1.22 6.91 -36.33 -0.25 -1.47 16 19 C -0.16 -2.64 10.13 -38.94 -0.39 -3.03 16 20 C 0.00 0.07 6.20 -82.17 -0.51 -0.44 16 21 C -0.01 -0.17 3.38 -91.77 -0.31 -0.48 16 22 C -0.14 -1.60 9.18 37.16 0.34 -1.26 16 23 C -0.14 -1.35 8.81 37.16 0.33 -1.02 16 24 N -0.35 -6.95 12.04 33.52 0.40 -6.54 16 25 O 0.16 3.39 7.47 15.54 0.12 3.51 16 26 C -0.14 -2.52 9.15 -39.39 -0.36 -2.88 16 27 C -0.10 -1.59 9.69 -39.61 -0.38 -1.98 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.17 3.16 4.73 -55.12 -0.26 2.90 16 33 H 0.05 1.09 5.27 -51.93 -0.27 0.82 16 34 H 0.05 1.08 4.69 -51.93 -0.24 0.83 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.18 2.37 7.65 -52.48 -0.40 1.96 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.56 7.48 -51.93 -0.39 0.17 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.14 2.64 6.25 -52.49 -0.33 2.32 16 45 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -30.16 369.60 -7.78 -37.94 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.13 Total: 5.00 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -3.61 Total: -14.17 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.86 Total: -42.84 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.19 Total: -6.94 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.16 -7.78 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072784745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.486 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds