Wall clock time and date at job start Tue Mar 31 2020 15:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.92867 * 2 1 4 4 C 1.38105 * 120.07238 * 179.97438 * 3 2 1 5 5 C 1.38903 * 119.92582 * 359.97332 * 4 3 2 6 6 N 1.39809 * 120.07181 * 180.02562 * 5 4 3 7 7 C 1.46500 * 120.00133 * 188.09260 * 6 5 4 8 8 C 1.50696 * 109.47239 * 263.91685 * 7 6 5 9 9 H 1.08000 * 120.00014 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99889 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00077 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00206 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47348 * 89.99892 * 12 10 8 14 14 H 1.48496 * 109.47120 * 210.00168 * 12 10 8 15 15 H 1.48503 * 109.46901 * 330.00307 * 12 10 8 16 16 C 1.34783 * 120.00133 * 8.09304 * 6 5 4 17 17 O 1.21595 * 119.99669 * 5.82175 * 16 6 5 18 18 C 1.47457 * 120.00084 * 185.81495 * 16 6 5 19 19 C 1.36855 * 126.94630 * 174.32978 * 18 16 6 20 20 C 1.41249 * 103.84739 * 180.02562 * 19 18 16 21 21 C 1.50700 * 126.70502 * 180.02562 * 20 19 18 22 22 C 1.53005 * 109.47031 * 84.99948 * 21 20 19 23 23 C 1.53003 * 109.47036 * 325.00238 * 21 20 19 24 24 N 1.30136 * 106.59057 * 0.26278 * 20 19 18 25 25 O 1.20888 * 111.98854 * 359.53141 * 24 20 19 26 26 C 1.38904 * 119.85469 * 0.27764 * 5 4 3 27 27 C 1.38098 * 119.92277 * 359.47014 * 26 5 4 28 28 H 1.09004 * 109.47140 * 89.99971 * 1 2 3 29 29 H 1.09003 * 109.47602 * 210.00122 * 1 2 3 30 30 H 1.09000 * 109.47326 * 330.00738 * 1 2 3 31 31 H 1.07993 * 119.96145 * 359.97210 * 3 2 1 32 32 H 1.07997 * 120.03662 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47215 * 23.91900 * 7 6 5 34 34 H 1.09001 * 109.46880 * 143.91521 * 7 6 5 35 35 H 0.96996 * 119.99890 * 179.97438 * 11 10 8 36 36 H 1.08003 * 128.07920 * 0.02562 * 19 18 16 37 37 H 1.08995 * 109.47474 * 205.00154 * 21 20 19 38 38 H 1.08995 * 109.47161 * 300.00398 * 22 21 20 39 39 H 1.08997 * 109.47086 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.46480 * 60.00014 * 22 21 20 41 41 H 1.08997 * 109.47209 * 299.99953 * 23 21 20 42 42 H 1.09005 * 109.46614 * 59.99931 * 23 21 20 43 43 H 1.09001 * 109.47010 * 179.97438 * 23 21 20 44 44 H 1.07992 * 120.03394 * 179.70161 * 26 5 4 45 45 H 1.08005 * 119.96351 * 180.23073 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2019 0.0005 5 6 4.2739 -0.0002 0.0016 6 7 5.6720 -0.0002 0.0027 7 6 6.4046 -1.2564 -0.1747 8 6 6.7851 -1.8108 1.1739 9 1 6.5092 -1.2803 2.0732 10 6 7.4864 -2.9948 1.2595 11 7 7.8189 -3.4785 2.4365 12 14 7.9642 -3.9121 -0.2961 13 1 9.2963 -3.4447 -0.7570 14 1 8.0211 -5.3689 -0.0140 15 1 6.9551 -3.6517 -1.3539 16 6 6.3459 1.1555 0.1670 17 8 5.7424 2.1804 0.4197 18 6 7.8148 1.1768 0.0405 19 6 8.6272 2.2777 0.0714 20 6 9.9251 1.7448 -0.0921 21 6 11.2178 2.5183 -0.1332 22 6 11.7165 2.7544 1.2939 23 6 10.9847 3.8649 -0.8213 24 7 9.7860 0.4559 -0.2053 25 8 8.6280 0.1172 -0.1293 26 6 3.5778 -1.2022 -0.0036 27 6 2.1969 -1.1985 0.0011 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6551 2.1327 -0.0005 32 1 4.1162 2.1382 0.0001 33 1 5.7731 -1.9745 -0.6978 34 1 7.3060 -1.0718 -0.7592 35 1 8.3120 -4.3116 2.4967 36 1 8.3425 3.3125 0.1925 37 1 11.9635 1.9504 -0.6894 38 1 10.9708 3.3223 1.8500 39 1 12.6517 3.3135 1.2641 40 1 11.8825 1.7951 1.7840 41 1 10.6294 3.6967 -1.8379 42 1 10.2389 4.4328 -0.2650 43 1 11.9196 4.4245 -0.8507 44 1 4.1160 -2.1384 -0.0077 45 1 1.6550 -2.1328 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072784745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:12 Heat of formation + Delta-G solvation = 49.281624 kcal Electronic energy + Delta-G solvation = -28213.647592 eV Core-core repulsion = 24392.524311 eV Total energy + Delta-G solvation = -3821.123281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.01822 -41.89902 -39.55700 -37.71084 -37.19488 -34.77381 -33.66985 -33.29720 -32.23968 -31.86860 -30.11429 -28.12741 -27.63550 -25.38867 -25.09293 -24.66526 -23.24503 -22.79316 -21.88477 -20.44992 -19.35944 -18.72489 -18.55208 -18.46816 -17.52623 -16.80363 -16.52630 -16.18008 -15.82536 -15.37499 -15.34928 -15.18424 -14.84333 -14.81125 -14.53258 -14.46775 -14.25405 -14.10762 -13.63070 -13.48365 -13.05912 -13.00388 -12.96790 -12.74072 -12.66730 -12.48929 -12.41521 -12.26088 -12.20749 -11.93202 -11.81727 -11.78938 -11.13627 -10.95042 -10.85666 -10.81801 -10.67274 -9.81654 -8.73055 -8.36634 -6.44239 -0.42814 0.48033 0.53511 1.05002 1.30362 1.36967 1.40494 1.47506 1.83156 2.03822 2.27935 2.93033 2.97381 2.99283 3.17006 3.68166 3.91828 4.00100 4.07693 4.10264 4.12658 4.20796 4.24402 4.35492 4.41832 4.48454 4.57094 4.68684 4.76490 4.79175 4.84933 4.92500 4.95005 4.95426 4.96218 5.13790 5.18331 5.20384 5.27934 5.30001 5.35371 5.37543 5.50803 5.62104 5.77155 5.98242 6.20717 6.26474 6.56046 6.70511 7.09592 7.19765 8.79686 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.004709 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.044138 B = 5944.508337 C = 8129.785393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.114 4.114 3 C -0.103 4.103 4 C -0.175 4.175 5 C 0.125 3.875 6 N -0.523 5.523 7 C 0.205 3.795 8 C -0.531 4.531 9 H 0.028 0.972 10 C 0.035 3.965 11 N -0.935 5.935 12 Si 0.924 3.076 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.236 1.236 16 C 0.599 3.401 17 O -0.522 6.522 18 C -0.091 4.091 19 C -0.141 4.141 20 C 0.020 3.980 21 C -0.017 4.017 22 C -0.142 4.142 23 C -0.139 4.139 24 N -0.380 5.380 25 O 0.118 5.882 26 C -0.155 4.155 27 C -0.102 4.102 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.270 0.730 36 H 0.208 0.792 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 12.423 -8.990 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C -0.121 4.121 4 C -0.194 4.194 5 C 0.031 3.969 6 N -0.241 5.241 7 C 0.084 3.916 8 C -0.569 4.569 9 H 0.046 0.954 10 C -0.165 4.165 11 N -0.574 5.574 12 Si 0.746 3.254 13 H -0.193 1.193 14 H -0.201 1.201 15 H -0.159 1.159 16 C 0.388 3.612 17 O -0.402 6.402 18 C -0.157 4.157 19 C -0.163 4.163 20 C -0.138 4.138 21 C -0.036 4.036 22 C -0.200 4.200 23 C -0.197 4.197 24 N -0.084 5.084 25 O 0.049 5.951 26 C -0.175 4.175 27 C -0.120 4.120 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.166 0.834 32 H 0.178 0.822 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.225 0.775 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.140 0.860 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.487 11.764 -8.954 14.991 hybrid contribution 0.344 -0.573 0.246 0.712 sum -2.143 11.191 -8.708 14.341 Atomic orbital electron populations 1.20765 0.88504 1.03583 1.03157 1.20311 0.97939 0.92446 1.00839 1.21248 0.92652 0.98900 0.99333 1.22345 0.95736 0.98351 1.02991 1.18268 0.81166 0.95890 1.01540 1.45480 1.05388 1.08755 1.64485 1.20100 0.92709 0.81420 0.97388 1.21096 1.36813 1.07729 0.91287 0.95368 1.25548 0.94352 0.97506 0.99106 1.70015 1.39875 1.21671 1.25853 0.86056 0.80505 0.78286 0.80510 1.19255 1.20124 1.15854 1.16866 0.83722 0.83338 0.77275 1.90500 1.66136 1.33774 1.49761 1.24061 0.93517 0.88507 1.09573 1.23071 0.90063 1.01060 1.02135 1.24254 0.98545 0.89310 1.01652 1.19775 0.88573 0.96015 0.99246 1.21841 1.02672 1.01622 0.93863 1.21848 1.03916 0.93799 1.00127 1.73739 0.98732 1.17609 1.18308 1.85371 1.11146 1.32537 1.66031 1.21120 0.95609 0.96393 1.04422 1.21107 0.92178 0.99208 0.99524 0.90049 0.90828 0.90572 0.83373 0.82162 0.92025 0.92850 0.92107 0.77530 0.89156 0.91940 0.88609 0.94492 0.92442 0.91287 0.89090 0.85999 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 10.01 71.23 0.71 -1.12 16 2 C -0.11 -3.05 5.88 -19.84 -0.12 -3.16 16 3 C -0.10 -2.98 9.69 22.25 0.22 -2.76 16 4 C -0.17 -6.35 8.97 22.40 0.20 -6.15 16 5 C 0.13 5.10 6.48 38.19 0.25 5.35 16 6 N -0.52 -23.14 2.70 -638.96 -1.72 -24.87 16 7 C 0.20 9.58 3.28 85.63 0.28 9.86 16 8 C -0.53 -29.77 9.30 25.60 0.24 -29.53 16 9 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 10 C 0.03 1.98 5.47 84.65 0.46 2.44 16 11 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 12 Si 0.92 42.32 27.47 68.60 1.88 44.20 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 16 C 0.60 25.64 7.52 86.67 0.65 26.29 16 17 O -0.52 -21.85 13.43 -4.01 -0.05 -21.90 16 18 C -0.09 -3.68 6.91 24.38 0.17 -3.51 16 19 C -0.14 -4.55 10.13 22.69 0.23 -4.32 16 20 C 0.02 0.66 6.20 43.55 0.27 0.93 16 21 C -0.02 -0.38 3.38 -11.54 -0.04 -0.41 16 22 C -0.14 -2.90 9.18 71.98 0.66 -2.24 16 23 C -0.14 -2.17 8.81 71.98 0.63 -1.54 16 24 N -0.38 -15.52 12.04 -48.84 -0.59 -16.10 16 25 O 0.12 5.26 7.47 65.79 0.49 5.75 16 26 C -0.16 -5.86 9.15 22.40 0.21 -5.65 16 27 C -0.10 -3.06 9.69 22.25 0.22 -2.84 16 28 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 30 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.16 6.08 4.73 -44.65 -0.21 5.87 16 33 H 0.06 2.73 5.27 -2.39 -0.01 2.72 16 34 H 0.05 2.49 4.69 -2.39 -0.01 2.47 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.21 5.16 7.65 -2.91 -0.02 5.14 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.00 7.48 -2.38 -0.02 0.98 16 43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.12 4.87 6.25 -2.91 -0.02 4.85 16 45 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -70.72 369.60 6.30 -64.42 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.76 Total: 23.94 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 5.24 Total: -18.39 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -2.01 Total: -98.02 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.44 Total: -16.15 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Total: -70.72 6.30 -64.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072784745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.700 kcal (2) G-P(sol) polarization free energy of solvation -70.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds