Wall clock time and date at job start Tue Mar 31 2020 15:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30838 * 125.90169 * 2 1 4 4 N 1.40079 * 108.20765 * 180.14648 * 3 2 1 5 5 C 1.46496 * 126.03900 * 179.85392 * 4 3 2 6 6 C 1.50703 * 109.47398 * 269.69004 * 5 4 3 7 7 H 1.07997 * 119.99660 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00499 * 179.72660 * 6 5 4 9 9 N 1.31517 * 119.99623 * 0.26810 * 8 6 5 10 10 Si 1.86795 * 120.00253 * 180.27421 * 8 6 5 11 11 H 1.48505 * 109.46972 * 59.99705 * 10 8 6 12 12 H 1.48504 * 109.47205 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47263 * 299.99899 * 10 8 6 14 14 C 1.34947 * 107.92613 * 359.59076 * 4 3 2 15 15 C 1.50699 * 126.12991 * 180.22274 * 14 4 3 16 16 C 1.35318 * 107.74415 * 0.24241 * 14 4 3 17 17 C 1.50699 * 126.03825 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47328 * 89.99779 * 17 16 14 19 19 C 1.50705 * 109.47038 * 179.97438 * 18 17 16 20 20 O 1.20823 * 120.00031 * 359.97438 * 19 18 17 21 21 O 1.34261 * 120.00037 * 179.97438 * 19 18 17 22 22 C 1.35926 * 117.00151 * 175.08117 * 21 19 18 23 23 C 1.38728 * 120.05964 * 256.81532 * 22 21 19 24 24 C 1.38142 * 119.94559 * 179.79471 * 23 22 21 25 25 C 1.38268 * 120.05138 * 0.47694 * 24 23 22 26 26 C 1.38264 * 120.11525 * 359.75305 * 25 24 23 27 27 C 1.38143 * 120.05412 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.47285 * 270.30442 * 1 2 3 29 29 H 1.09001 * 109.46981 * 30.30609 * 1 2 3 30 30 H 1.08999 * 109.47343 * 150.30525 * 1 2 3 31 31 H 1.08996 * 109.47635 * 149.68990 * 5 4 3 32 32 H 1.09004 * 109.47074 * 29.68777 * 5 4 3 33 33 H 0.97000 * 119.99833 * 179.97438 * 9 8 6 34 34 H 1.09007 * 109.47173 * 90.02306 * 15 14 4 35 35 H 1.09000 * 109.47005 * 210.01975 * 15 14 4 36 36 H 1.08998 * 109.47085 * 330.02537 * 15 14 4 37 37 H 1.09000 * 109.46755 * 209.99610 * 17 16 14 38 38 H 1.08997 * 109.47436 * 329.99287 * 17 16 14 39 39 H 1.09000 * 109.47064 * 299.99641 * 18 17 16 40 40 H 1.08999 * 109.47372 * 60.00172 * 18 17 16 41 41 H 1.08004 * 120.02669 * 0.02562 * 23 22 21 42 42 H 1.07995 * 119.97706 * 180.25399 * 24 23 22 43 43 H 1.08005 * 119.94109 * 179.72517 * 25 24 23 44 44 H 1.08004 * 119.97315 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.03070 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0034 5 6 4.7899 1.5007 -0.0076 6 6 5.1954 1.7904 -1.4298 7 1 4.6301 1.3705 -2.2486 8 6 6.2851 2.5955 -1.6857 9 7 6.9737 3.1064 -0.6885 10 14 6.7831 2.9607 -3.4486 11 1 5.6631 3.6394 -4.1488 12 1 7.9769 3.8440 -3.4528 13 1 7.1048 1.6896 -4.1455 14 6 3.6142 -0.7154 0.0037 15 6 4.8350 -1.5989 0.0080 16 6 2.3271 -1.1330 0.0060 17 6 1.8599 -2.5657 0.0141 18 6 1.7016 -3.0424 1.4593 19 6 1.2338 -4.4750 1.4673 20 8 1.0458 -5.0550 0.4242 21 8 1.0259 -5.1068 2.6336 22 6 0.5070 -6.3616 2.5719 23 6 -0.8328 -6.5745 2.8618 24 6 -1.3587 -7.8501 2.7942 25 6 -0.5486 -8.9156 2.4474 26 6 0.7882 -8.7067 2.1626 27 6 1.3178 -7.4323 2.2244 28 1 -0.3634 0.0055 1.0277 29 1 -0.3633 0.8872 -0.5186 30 1 -0.3634 -0.8927 -0.5091 31 1 5.6091 1.0009 0.5092 32 1 4.5561 2.4359 0.5012 33 1 7.7405 3.6725 -0.8684 34 1 5.1295 -1.8069 1.0367 35 1 4.6074 -2.5355 -0.5011 36 1 5.6511 -1.0936 -0.5084 37 1 0.9011 -2.6381 -0.4994 38 1 2.5933 -3.1900 -0.4962 39 1 2.6604 -2.9700 1.9728 40 1 0.9681 -2.4182 1.9695 41 1 -1.4651 -5.7431 3.1366 42 1 -2.4026 -8.0158 3.0158 43 1 -0.9606 -9.9128 2.3994 44 1 1.4190 -9.5407 1.8924 45 1 2.3621 -7.2697 2.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073855614.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:05 Heat of formation + Delta-G solvation = 3.362581 kcal Electronic energy + Delta-G solvation = -26602.926477 eV Core-core repulsion = 22779.811997 eV Total energy + Delta-G solvation = -3823.114481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48178 -40.62741 -38.95567 -36.99832 -34.51659 -33.51007 -32.51918 -31.35681 -30.88327 -30.11411 -29.00693 -27.09367 -25.92291 -24.68289 -23.15708 -22.98292 -22.13824 -20.80518 -18.90405 -18.74025 -18.35371 -17.27207 -16.82948 -16.73125 -16.56797 -15.56500 -15.09443 -14.96559 -14.52045 -14.33445 -14.00622 -13.82715 -13.69837 -13.13872 -12.98319 -12.95195 -12.83439 -12.55901 -12.40938 -12.24038 -12.10527 -11.97264 -11.88015 -11.66668 -11.39712 -11.29183 -11.01536 -10.97752 -10.85121 -10.81526 -10.68614 -10.27881 -9.78599 -9.68222 -9.35217 -9.06936 -8.66855 -8.23056 -7.56331 -6.28802 -4.36516 0.75908 0.98582 2.00730 2.52302 2.74331 3.21394 3.25436 3.29100 3.31608 3.46574 3.57411 4.27448 4.44499 4.52845 4.60882 4.74528 4.99860 5.02555 5.05532 5.09541 5.14629 5.26463 5.27849 5.44077 5.58686 5.59843 5.67783 5.77721 5.82394 5.90367 5.94308 5.95751 5.96122 6.01507 6.10065 6.15627 6.21677 6.28966 6.40350 6.47758 6.61541 6.80759 6.98109 7.06874 7.45485 7.63424 7.68923 7.85436 8.00906 8.62130 8.71925 9.30107 10.78732 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024345 B = 0.002164 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.873318 B =12937.734361 C =13485.374188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.053 3.947 3 N -0.295 5.295 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.537 4.537 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.907 3.093 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.098 3.902 15 C -0.093 4.093 16 C -0.272 4.272 17 C -0.014 4.014 18 C -0.104 4.104 19 C 0.459 3.541 20 O -0.490 6.490 21 O -0.299 6.299 22 C 0.086 3.914 23 C -0.121 4.121 24 C -0.107 4.107 25 C -0.121 4.121 26 C -0.106 4.106 27 C -0.120 4.120 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.269 0.731 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.860 -21.029 8.224 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 N -0.119 5.119 4 N -0.103 5.103 5 C 0.139 3.861 6 C -0.576 4.576 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.529 5.529 10 Si 0.734 3.266 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.034 4.034 15 C -0.152 4.152 16 C -0.284 4.284 17 C -0.053 4.053 18 C -0.142 4.142 19 C 0.303 3.697 20 O -0.374 6.374 21 O -0.215 6.215 22 C 0.045 3.955 23 C -0.139 4.139 24 C -0.125 4.125 25 C -0.139 4.139 26 C -0.124 4.124 27 C -0.139 4.139 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.558 -19.674 7.935 24.653 hybrid contribution 0.461 -0.535 -0.917 1.158 sum -12.097 -20.210 7.018 24.577 Atomic orbital electron populations 1.20045 0.87996 1.02492 1.01932 1.21948 0.96144 0.90692 1.02399 1.77289 0.87506 1.22624 1.24489 1.49274 1.05817 1.04191 1.50998 1.19669 0.77888 0.89610 0.98937 1.21264 1.13260 1.31767 0.91297 0.91839 1.24932 0.95718 0.94955 0.98172 1.69910 1.19109 1.32696 1.31178 0.86406 0.78038 0.78490 0.83713 1.19944 1.20930 1.19926 1.20783 0.96075 0.85742 1.00808 1.20429 0.94460 0.97792 1.02471 1.19210 0.91485 0.94611 1.23121 1.19487 1.01994 0.91547 0.92275 1.21612 1.04180 0.86414 1.01963 1.24657 0.73985 0.90061 0.80991 1.90693 1.46790 1.67262 1.32661 1.84670 1.74478 1.26850 1.35542 1.18583 0.92216 0.82889 1.01789 1.21203 0.93220 0.98444 1.01075 1.21042 1.00106 0.91906 0.99460 1.21253 0.93958 0.99284 0.99375 1.21055 0.95608 0.96410 0.99315 1.21358 1.00359 0.92634 0.99524 0.91460 0.91463 0.91256 0.93035 0.92998 0.92170 0.91085 0.90679 0.89849 0.90966 0.91060 0.87481 0.87423 0.85078 0.85171 0.85506 0.85268 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.26 36.00 0.37 -0.54 16 2 C 0.05 0.97 7.22 -82.41 -0.59 0.38 16 3 N -0.30 -6.67 12.58 33.67 0.42 -6.24 16 4 N -0.32 -7.41 3.60 -58.31 -0.21 -7.62 16 5 C 0.26 6.50 5.82 -5.19 -0.03 6.47 16 6 C -0.54 -14.69 9.39 -34.44 -0.32 -15.02 16 7 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 10 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 14 C 0.10 1.88 6.93 -82.26 -0.57 1.31 16 15 C -0.09 -1.48 9.68 36.01 0.35 -1.13 16 16 C -0.27 -4.67 5.35 -105.05 -0.56 -5.23 16 17 C -0.01 -0.20 4.59 -27.88 -0.13 -0.32 16 18 C -0.10 -1.17 5.79 -27.88 -0.16 -1.33 16 19 C 0.46 5.66 7.83 36.01 0.28 5.94 16 20 O -0.49 -7.29 15.48 -18.75 -0.29 -7.58 16 21 O -0.30 -3.55 10.03 -23.62 -0.24 -3.79 16 22 C 0.09 0.98 5.13 -39.22 -0.20 0.78 16 23 C -0.12 -1.15 9.99 -39.44 -0.39 -1.55 16 24 C -0.11 -0.83 10.04 -39.61 -0.40 -1.22 16 25 C -0.12 -0.89 10.04 -39.56 -0.40 -1.29 16 26 C -0.11 -0.87 10.04 -39.61 -0.40 -1.27 16 27 C -0.12 -1.24 9.57 -39.43 -0.38 -1.62 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.82 7.26 -51.93 -0.38 0.44 16 31 H 0.05 1.29 7.66 -51.93 -0.40 0.89 16 32 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 35 H 0.07 1.01 7.15 -51.93 -0.37 0.64 16 36 H 0.08 1.47 7.72 -51.93 -0.40 1.07 16 37 H 0.07 0.96 7.21 -51.93 -0.37 0.59 16 38 H 0.07 0.97 7.10 -51.93 -0.37 0.60 16 39 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 44 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -32.19 388.32 -8.86 -41.05 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.49 Total: 0.43 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -3.63 Total: -13.95 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.95 Total: -38.04 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.53 Total: -11.37 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.19 -8.86 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073855614.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.413 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds