Wall clock time and date at job start Tue Mar 31 2020 15:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33320 * 126.16861 * 2 1 4 4 C 1.31634 * 108.94936 * 180.02562 * 3 2 1 5 5 C 1.47716 * 125.53846 * 179.73699 * 4 3 2 6 6 C 1.39635 * 120.14912 * 185.24223 * 5 4 3 7 7 C 1.37939 * 119.84256 * 179.76937 * 6 5 4 8 8 C 1.38366 * 120.15188 * 0.48497 * 7 6 5 9 9 C 1.38367 * 120.30576 * 359.78737 * 8 7 6 10 10 C 1.37936 * 120.15247 * 359.95669 * 9 8 7 11 11 O 1.34202 * 108.91998 * 0.02562 * 4 3 2 12 12 C 1.35400 * 107.59826 * 0.02562 * 11 4 3 13 13 C 1.46582 * 126.56323 * 180.02562 * 12 11 4 14 14 O 1.21698 * 119.99867 * 186.54559 * 13 12 11 15 15 N 1.34775 * 119.99469 * 6.54392 * 13 12 11 16 16 C 1.46497 * 120.00561 * 2.71192 * 15 13 12 17 17 C 1.50707 * 109.46874 * 83.51626 * 16 15 13 18 18 H 1.08005 * 119.99994 * 355.03464 * 17 16 15 19 19 C 1.37873 * 119.99869 * 175.03615 * 17 16 15 20 20 N 1.31517 * 119.99967 * 182.53272 * 19 17 16 21 21 Si 1.86800 * 120.00243 * 2.53035 * 19 17 16 22 22 H 1.48500 * 109.47359 * 93.74731 * 21 19 17 23 23 H 1.48500 * 109.47123 * 213.74793 * 21 19 17 24 24 H 1.48498 * 109.47089 * 333.74473 * 21 19 17 25 25 C 1.46505 * 119.99522 * 182.71214 * 15 13 12 26 26 C 1.53002 * 109.46948 * 114.96791 * 25 15 13 27 27 C 1.53001 * 109.47104 * 234.96161 * 25 15 13 28 28 H 1.08996 * 109.47065 * 89.96854 * 1 2 3 29 29 H 1.09000 * 109.46909 * 209.96694 * 1 2 3 30 30 H 1.08999 * 109.47217 * 329.97092 * 1 2 3 31 31 H 1.07999 * 120.08059 * 359.97438 * 6 5 4 32 32 H 1.08005 * 119.92272 * 180.22739 * 7 6 5 33 33 H 1.08003 * 119.84728 * 179.76727 * 8 7 6 34 34 H 1.08002 * 119.92176 * 179.97438 * 9 8 7 35 35 H 1.07996 * 120.07869 * 180.02562 * 10 9 8 36 36 H 1.08992 * 109.47434 * 203.51599 * 16 15 13 37 37 H 1.09003 * 109.47282 * 323.52026 * 16 15 13 38 38 H 0.96998 * 120.00162 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.47363 * 354.96588 * 25 15 13 40 40 H 1.08996 * 109.47254 * 59.99730 * 26 25 15 41 41 H 1.08999 * 109.47322 * 180.02562 * 26 25 15 42 42 H 1.09007 * 109.46809 * 299.99576 * 26 25 15 43 43 H 1.09002 * 109.46488 * 60.00526 * 27 25 15 44 44 H 1.08998 * 109.47219 * 179.97438 * 27 25 15 45 45 H 1.08996 * 109.47360 * 300.00430 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2938 1.0763 0.0000 4 6 3.5512 0.6866 -0.0006 5 6 4.7271 1.5805 -0.0063 6 6 6.0129 1.0473 -0.1166 7 6 7.1063 1.8883 -0.1261 8 6 6.9317 3.2565 -0.0165 9 6 5.6607 3.7912 0.0989 10 6 4.5582 2.9623 0.1044 11 8 3.5910 -0.6548 -0.0015 12 6 2.3131 -1.1023 -0.0021 13 6 1.8781 -2.5021 -0.0026 14 8 0.6976 -2.7724 -0.1233 15 7 2.7855 -3.4897 0.1304 16 6 4.1988 -3.1633 0.3352 17 6 4.4453 -2.8931 1.7972 18 1 3.6175 -2.8790 2.4908 19 6 5.7274 -2.6638 2.2493 20 7 5.9488 -2.4774 3.5322 21 14 7.1502 -2.6180 1.0397 22 1 7.3985 -1.2152 0.6205 23 1 8.3693 -3.1639 1.6885 24 1 6.8138 -3.4384 -0.1515 25 6 2.3583 -4.8898 0.0703 26 6 2.9733 -5.5582 -1.1609 27 6 2.8231 -5.6195 1.3323 28 1 -0.3633 0.0006 -1.0276 29 1 -0.3633 -0.8903 0.5133 30 1 -0.3633 0.8897 0.5143 31 1 6.1509 -0.0208 -0.1977 32 1 8.1012 1.4774 -0.2151 33 1 7.7915 3.9101 -0.0206 34 1 5.5317 4.8600 0.1845 35 1 3.5668 3.3809 0.1941 36 1 4.8159 -4.0014 0.0116 37 1 4.4552 -2.2776 -0.2462 38 1 6.8509 -2.3165 3.8504 39 1 1.2713 -4.9355 0.0037 40 1 4.0603 -5.5125 -1.0943 41 1 2.6551 -6.5998 -1.2059 42 1 2.6422 -5.0384 -2.0600 43 1 2.3849 -5.1433 2.2094 44 1 2.5049 -6.6610 1.2878 45 1 3.9100 -5.5738 1.3989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081314033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:00 Heat of formation + Delta-G solvation = -1.343196 kcal Electronic energy + Delta-G solvation = -28974.778621 eV Core-core repulsion = 25151.460083 eV Total energy + Delta-G solvation = -3823.318538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.44350 -40.92547 -39.98437 -37.84105 -36.30964 -34.91598 -33.91472 -33.10862 -32.02909 -31.20892 -29.97335 -28.62348 -28.05428 -25.65277 -24.65268 -23.90223 -23.35815 -22.31075 -21.67435 -20.42052 -19.20038 -18.60254 -18.42699 -17.95351 -17.52066 -16.90624 -16.40542 -16.24903 -15.85618 -15.66476 -15.12665 -15.01840 -14.84807 -14.66143 -14.44387 -14.30652 -14.18217 -14.02337 -13.86472 -13.57485 -13.41335 -13.20118 -13.01736 -12.76828 -12.67149 -12.38983 -12.31754 -12.18413 -12.15662 -12.00303 -11.81305 -11.73217 -11.61646 -11.14751 -10.76144 -10.67936 -10.00626 -9.69504 -9.23728 -8.31194 -6.36100 -0.67380 0.31070 0.36312 1.29353 1.30313 1.36694 1.42328 1.47732 1.90432 2.16127 2.30213 2.68812 2.79195 3.02636 3.45102 3.62427 3.90227 3.94068 3.97583 4.09943 4.17508 4.25513 4.34064 4.37867 4.42093 4.47933 4.53118 4.68559 4.71090 4.76563 4.77458 4.78578 4.85770 4.91843 4.98391 5.01684 5.03905 5.21392 5.29878 5.37003 5.38415 5.44144 5.45127 5.46152 5.59731 5.90406 6.09688 6.32142 6.47922 6.64320 6.95562 7.26740 8.85390 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.005961 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.496645 B = 4696.259686 C = 6596.056071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.066 3.934 3 N -0.488 5.488 4 C 0.240 3.760 5 C -0.051 4.051 6 C -0.108 4.108 7 C -0.128 4.128 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.074 4.074 11 O -0.162 6.162 12 C -0.122 4.122 13 C 0.600 3.400 14 O -0.553 6.553 15 N -0.580 5.580 16 C 0.215 3.785 17 C -0.520 4.520 18 H 0.022 0.978 19 C 0.026 3.974 20 N -0.940 5.940 21 Si 0.917 3.083 22 H -0.240 1.240 23 H -0.284 1.284 24 H -0.245 1.245 25 C 0.127 3.873 26 C -0.151 4.151 27 C -0.143 4.143 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.141 0.859 36 H 0.053 0.947 37 H 0.040 0.960 38 H 0.267 0.733 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.029 0.971 44 H 0.092 0.908 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 7.378 -11.072 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 N -0.218 5.218 4 C 0.039 3.961 5 C -0.053 4.053 6 C -0.128 4.128 7 C -0.146 4.146 8 C -0.103 4.103 9 C -0.134 4.134 10 C -0.093 4.093 11 O -0.048 6.048 12 C -0.177 4.177 13 C 0.388 3.612 14 O -0.436 6.436 15 N -0.308 5.308 16 C 0.094 3.906 17 C -0.558 4.558 18 H 0.041 0.959 19 C -0.173 4.173 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.164 1.164 23 H -0.209 1.209 24 H -0.168 1.168 25 C 0.025 3.975 26 C -0.208 4.208 27 C -0.200 4.200 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.164 0.836 33 H 0.186 0.814 34 H 0.187 0.813 35 H 0.159 0.841 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.111 0.889 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.298 7.783 -11.006 13.484 hybrid contribution 0.918 -1.055 0.492 1.483 sum 1.216 6.728 -10.514 12.541 Atomic orbital electron populations 1.20345 0.83228 1.04215 1.04484 1.22487 0.99524 0.86046 0.98030 1.70422 0.99680 1.30719 1.20974 1.24731 0.94138 0.79896 0.97322 1.17599 0.87344 0.92009 1.08300 1.21552 0.92204 1.00687 0.98310 1.21375 0.98529 0.94405 1.00257 1.21833 0.98823 0.94575 0.95106 1.21532 0.91201 1.01475 0.99172 1.21385 1.01472 0.89973 0.96437 1.84949 1.29198 1.22293 1.68338 1.23074 0.81511 0.96747 1.16332 1.16514 0.85370 0.82132 0.77170 1.90717 1.16036 1.82459 1.54352 1.48066 1.08893 1.06317 1.67568 1.19807 0.78195 0.96787 0.95815 1.21213 0.93356 1.48929 0.92323 0.95944 1.25635 1.01249 0.93840 0.96593 1.70050 1.22295 1.50007 1.15609 0.86237 0.78733 0.81050 0.80031 1.16405 1.20940 1.16808 1.21303 1.00536 0.78752 0.96882 1.22100 1.01148 1.01785 0.95814 1.21970 1.01794 1.00385 0.95896 0.88502 0.90130 0.88906 0.87148 0.83572 0.81375 0.81254 0.84113 0.92933 0.94219 0.92431 0.88816 0.92572 0.88407 0.92568 0.95209 0.88918 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.08 9.80 71.24 0.70 -1.38 16 2 C 0.07 2.63 7.15 41.94 0.30 2.93 16 3 N -0.49 -19.39 10.87 -292.23 -3.18 -22.57 16 4 C 0.24 9.91 7.88 87.23 0.69 10.60 16 5 C -0.05 -1.79 5.87 -20.10 -0.12 -1.91 16 6 C -0.11 -3.64 9.70 22.54 0.22 -3.43 16 7 C -0.13 -3.21 10.03 22.23 0.22 -2.99 16 8 C -0.09 -1.60 10.04 22.33 0.22 -1.38 16 9 C -0.12 -2.27 10.03 22.23 0.22 -2.04 16 10 C -0.07 -2.00 9.69 22.54 0.22 -1.78 16 11 O -0.16 -7.39 6.77 -12.72 -0.09 -7.48 16 12 C -0.12 -5.44 6.76 24.06 0.16 -5.27 16 13 C 0.60 26.88 7.58 86.42 0.66 27.53 16 14 O -0.55 -24.50 14.20 -4.34 -0.06 -24.56 16 15 N -0.58 -24.97 2.37 -806.93 -1.92 -26.89 16 16 C 0.22 9.96 2.98 85.64 0.25 10.22 16 17 C -0.52 -28.78 8.41 25.60 0.22 -28.56 16 18 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 19 C 0.03 1.42 5.47 84.65 0.46 1.88 16 20 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 21 Si 0.92 40.08 27.11 68.60 1.86 41.94 16 22 H -0.24 -9.53 5.49 99.48 0.55 -8.98 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.24 -9.82 6.36 99.48 0.63 -9.19 16 25 C 0.13 4.51 3.23 44.99 0.15 4.65 16 26 C -0.15 -4.19 9.26 71.98 0.67 -3.52 16 27 C -0.14 -5.08 8.65 71.98 0.62 -4.46 16 28 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.08 2.73 6.61 -2.39 -0.02 2.72 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.11 4.18 5.71 -2.91 -0.02 4.17 16 32 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.14 3.63 7.83 -2.91 -0.02 3.61 16 36 H 0.05 2.31 5.29 -2.39 -0.01 2.29 16 37 H 0.04 1.89 4.77 -2.39 -0.01 1.88 16 38 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.09 3.31 6.91 -2.39 -0.02 3.30 16 40 H 0.06 1.62 6.91 -2.39 -0.02 1.60 16 41 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.05 2.08 7.08 -2.39 -0.02 2.06 16 Total: -1.00 -71.98 367.25 3.55 -68.43 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.78 Total: 26.60 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 5.86 Total: 1.09 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -4.79 Total: -106.03 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.15 Total: -32.04 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.86 Total: 41.94 kcal Total: -71.98 3.55 -68.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081314033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.087 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds