Wall clock time and date at job start Tue Mar 31 2020 15:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34432 * 125.45833 * 2 1 4 4 C 1.46745 * 106.36955 * 180.24299 * 3 2 1 5 5 C 1.47114 * 127.02136 * 179.71678 * 4 3 2 6 6 O 1.21547 * 120.00297 * 180.02562 * 5 4 3 7 7 O 1.34788 * 119.99904 * 0.02562 * 5 4 3 8 8 C 1.45200 * 116.99851 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.47069 * 29.99781 * 8 7 5 10 10 C 1.53004 * 109.46872 * 269.99688 * 8 7 5 11 11 C 1.50704 * 109.47317 * 149.99763 * 8 7 5 12 12 H 1.08000 * 119.99359 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00065 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99785 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99915 * 179.97438 * 13 11 8 16 16 H 1.48510 * 109.46925 * 59.99892 * 15 13 11 17 17 H 1.48495 * 109.47074 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47099 * 300.00143 * 15 13 11 19 19 C 1.37843 * 105.95438 * 359.73228 * 4 3 2 20 20 C 1.50702 * 125.89464 * 179.97438 * 19 4 3 21 21 N 1.34622 * 108.20521 * 0.02562 * 19 4 3 22 22 C 1.46497 * 124.80820 * 179.97438 * 21 19 4 23 23 C 1.50703 * 109.47215 * 90.00318 * 22 21 19 24 24 C 1.38225 * 119.61869 * 124.99788 * 23 22 21 25 25 C 1.38635 * 119.15939 * 179.97438 * 24 23 22 26 26 C 1.38675 * 118.41956 * 0.02562 * 25 24 23 27 27 C 1.38186 * 119.16332 * 0.27967 * 26 25 24 28 28 N 1.31860 * 119.61591 * 304.98143 * 23 22 21 29 29 H 1.08998 * 109.47096 * 270.21311 * 1 2 3 30 30 H 1.08998 * 109.46497 * 30.21208 * 1 2 3 31 31 H 1.08996 * 109.47014 * 150.20883 * 1 2 3 32 32 H 1.07995 * 126.81725 * 359.97223 * 3 2 1 33 33 H 1.09000 * 109.46948 * 299.99609 * 10 8 7 34 34 H 1.08991 * 109.47088 * 60.00381 * 10 8 7 35 35 H 1.09004 * 109.46547 * 180.02562 * 10 8 7 36 36 H 0.96998 * 119.99631 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.47111 * 270.00561 * 20 19 4 38 38 H 1.09001 * 109.46758 * 30.00868 * 20 19 4 39 39 H 1.09001 * 109.46475 * 150.00288 * 20 19 4 40 40 H 1.09005 * 109.47411 * 330.00235 * 22 21 19 41 41 H 1.09003 * 109.47642 * 210.00220 * 22 21 19 42 42 H 1.07997 * 120.42054 * 0.02562 * 24 23 22 43 43 H 1.07998 * 120.78847 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.41399 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.61418 * 179.70216 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2869 1.0950 0.0000 4 6 3.6737 0.6151 -0.0060 5 6 4.8949 1.4354 -0.0140 6 8 5.9863 0.9005 -0.0188 7 8 4.8034 2.7802 -0.0160 8 6 6.0494 3.5256 -0.0245 9 1 6.8152 2.9474 -0.5417 10 6 6.4953 3.7902 1.4150 11 6 5.8447 4.8381 -0.7363 12 1 4.8752 5.0869 -1.1420 13 6 6.8951 5.7212 -0.8695 14 7 8.0755 5.4184 -0.3750 15 14 6.6416 7.3478 -1.7524 16 1 5.5976 8.1354 -1.0487 17 1 7.9155 8.1107 -1.7599 18 1 6.2097 7.0905 -3.1497 19 6 3.5983 -0.7613 -0.0029 20 6 4.7690 -1.7103 -0.0074 21 7 2.2984 -1.1113 0.0037 22 6 1.8037 -2.4902 0.0081 23 6 1.6406 -2.9608 1.4305 24 6 0.4197 -3.4537 1.8512 25 6 0.2804 -3.8846 3.1615 26 6 1.3792 -3.8026 4.0035 27 6 2.5664 -3.2925 3.5137 28 7 2.6644 -2.8980 2.2591 29 1 -0.3633 0.0038 1.0276 30 1 -0.3632 0.8881 -0.5171 31 1 -0.3633 -0.8918 -0.5106 32 1 1.9582 2.1237 -0.0004 33 1 5.7295 4.3684 1.9320 34 1 6.6434 2.8409 1.9297 35 1 7.4305 4.3502 1.4085 36 1 8.8146 6.0396 -0.4690 37 1 5.0457 -1.9409 -1.0361 38 1 5.6144 -1.2467 0.5011 39 1 4.4935 -2.6294 0.5097 40 1 2.5163 -3.1336 -0.5080 41 1 0.8409 -2.5326 -0.5012 42 1 -0.4149 -3.5033 1.1676 43 1 -0.6614 -4.2747 3.5180 44 1 1.3065 -4.1288 5.0305 45 1 3.4253 -3.2209 4.1645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:17 Heat of formation + Delta-G solvation = -9.525555 kcal Electronic energy + Delta-G solvation = -27468.003773 eV Core-core repulsion = 23644.330420 eV Total energy + Delta-G solvation = -3823.673352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46353 -40.28279 -38.73973 -35.35208 -34.11772 -33.05581 -32.82980 -32.43072 -30.91757 -29.40699 -28.96604 -26.90617 -25.17535 -24.74171 -23.94454 -22.96209 -22.05506 -20.69137 -19.45475 -18.32208 -17.37380 -16.87813 -16.45515 -16.33264 -16.15768 -15.66718 -15.11032 -15.00771 -14.40390 -14.39056 -14.02329 -13.85020 -13.56352 -13.40629 -13.17963 -13.01532 -12.70195 -12.42866 -12.31918 -12.28608 -12.12691 -11.92963 -11.69794 -11.59698 -11.10732 -11.05614 -10.91573 -10.68109 -10.29937 -10.22360 -10.14313 -9.81017 -9.48983 -9.32668 -9.27424 -8.71948 -8.39284 -8.32595 -7.70701 -6.04858 -4.10527 0.60747 0.86714 2.05842 2.60952 2.77698 3.35125 3.37680 3.41101 3.44580 3.78284 4.09409 4.14155 4.20788 4.44745 4.48975 4.54690 4.66808 4.75445 4.82074 4.89477 5.01528 5.11934 5.22488 5.27774 5.28018 5.48285 5.52645 5.62906 5.72985 5.76682 5.86624 5.93841 6.02540 6.21485 6.27024 6.37823 6.58076 6.84779 7.06982 7.08696 7.12488 7.29803 7.40061 7.45261 7.60603 7.75972 7.92279 8.14715 8.33915 8.87700 9.18039 9.54720 11.02746 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021925 B = 0.002662 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.771841 B =10515.751775 C =10998.450698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.011 4.011 3 C -0.133 4.133 4 C -0.215 4.215 5 C 0.530 3.470 6 O -0.534 6.534 7 O -0.352 6.352 8 C 0.216 3.784 9 H 0.045 0.955 10 C -0.153 4.153 11 C -0.516 4.516 12 H 0.067 0.933 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.911 3.089 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.126 3.874 20 C -0.093 4.093 21 N -0.431 5.431 22 C 0.154 3.846 23 C 0.104 3.896 24 C -0.159 4.159 25 C -0.075 4.075 26 C -0.170 4.170 27 C 0.106 3.894 28 N -0.461 5.461 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.149 0.851 33 H 0.035 0.965 34 H 0.015 0.985 35 H 0.097 0.903 36 H 0.265 0.735 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.694 -21.736 5.437 29.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C -0.157 4.157 4 C -0.223 4.223 5 C 0.376 3.624 6 O -0.427 6.427 7 O -0.268 6.268 8 C 0.164 3.836 9 H 0.063 0.937 10 C -0.211 4.211 11 C -0.554 4.554 12 H 0.085 0.915 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.738 3.262 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.011 3.989 20 C -0.150 4.150 21 N -0.109 5.109 22 C 0.031 3.969 23 C -0.034 4.034 24 C -0.180 4.180 25 C -0.101 4.101 26 C -0.190 4.190 27 C -0.051 4.051 28 N -0.170 5.170 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.516 -21.717 5.136 28.369 hybrid contribution -0.798 0.535 0.091 0.965 sum -18.313 -21.182 5.227 28.485 Atomic orbital electron populations 1.20252 0.88242 1.02816 1.02118 1.20075 0.93258 0.85394 1.12946 1.21887 0.90731 0.97726 1.05355 1.19671 0.92187 0.91001 1.19405 1.20003 0.87320 0.82557 0.72513 1.90710 1.29482 1.74041 1.48494 1.86551 1.41097 1.16973 1.82215 1.20538 0.78981 0.89648 0.94474 0.93684 1.22143 1.03330 0.98826 0.96816 1.21023 0.97481 1.00776 1.36153 0.91452 1.24879 0.94752 0.98716 0.95725 1.69904 1.01112 1.36751 1.45148 0.86356 0.77363 0.82463 0.80044 1.20021 1.21133 1.20045 1.20421 0.84392 0.93466 1.00631 1.20571 0.94631 0.97154 1.02659 1.43192 1.05166 1.04847 1.57684 1.20626 1.02372 0.81909 0.91971 1.21385 0.89882 0.96119 0.96062 1.21911 0.98106 1.00796 0.97161 1.21582 0.99004 0.96248 0.93253 1.22231 0.94328 1.01078 1.01338 1.22850 0.97433 0.93197 0.91646 1.67473 1.31579 1.13822 1.04137 0.91649 0.90083 0.92297 0.83283 0.94632 0.96541 0.88436 0.92519 0.91096 0.88236 0.90979 0.87447 0.87486 0.84634 0.84622 0.84591 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.05 36.01 0.36 -0.33 16 2 C -0.01 -0.15 6.84 -81.89 -0.56 -0.71 16 3 C -0.13 -2.30 10.89 -37.49 -0.41 -2.71 16 4 C -0.21 -4.32 6.33 -103.01 -0.65 -4.97 16 5 C 0.53 12.98 7.93 34.33 0.27 13.25 16 6 O -0.53 -13.91 14.14 -19.30 -0.27 -14.19 16 7 O -0.35 -9.44 9.77 -40.73 -0.40 -9.83 16 8 C 0.22 6.27 2.57 -27.88 -0.07 6.20 16 9 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 10 C -0.15 -4.20 9.33 37.16 0.35 -3.85 16 11 C -0.52 -15.35 8.90 -34.44 -0.31 -15.66 16 12 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 14 N -0.89 -26.43 11.32 55.43 0.63 -25.80 16 15 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 C 0.13 2.10 6.92 -81.51 -0.56 1.53 16 20 C -0.09 -1.39 9.28 36.01 0.33 -1.05 16 21 N -0.43 -5.69 2.62 -108.96 -0.29 -5.98 16 22 C 0.15 1.37 5.75 -5.19 -0.03 1.34 16 23 C 0.10 0.97 6.39 -82.58 -0.53 0.45 16 24 C -0.16 -1.08 9.71 -39.44 -0.38 -1.46 16 25 C -0.07 -0.45 10.18 -39.27 -0.40 -0.85 16 26 C -0.17 -1.14 10.11 -39.44 -0.40 -1.54 16 27 C 0.11 0.96 11.18 -17.55 -0.20 0.76 16 28 N -0.46 -5.21 9.35 -9.47 -0.09 -5.30 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.39 6.92 -51.93 -0.36 0.03 16 32 H 0.15 2.50 8.06 -52.49 -0.42 2.08 16 33 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 2.79 6.07 -51.93 -0.31 2.48 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.75 6.51 -51.93 -0.34 1.41 16 39 H 0.07 0.92 6.71 -51.93 -0.35 0.57 16 40 H 0.11 0.84 7.49 -51.93 -0.39 0.46 16 41 H 0.11 0.62 6.60 -51.93 -0.34 0.27 16 42 H 0.14 0.54 7.95 -52.49 -0.42 0.13 16 43 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -36.29 380.18 -9.22 -45.51 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.23 Total: 0.87 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.28 Total: -7.96 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.25 Total: -37.08 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.67 Total: -24.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.29 -9.22 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.982 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds