Wall clock time and date at job start Tue Mar 31 2020 15:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34432 * 125.45833 * 2 1 4 4 C 1.46745 * 106.36955 * 180.24299 * 3 2 1 5 5 C 1.47114 * 127.02136 * 179.71678 * 4 3 2 6 6 O 1.21547 * 120.00297 * 180.02562 * 5 4 3 7 7 O 1.34788 * 119.99904 * 0.02562 * 5 4 3 8 8 C 1.45200 * 116.99851 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.47069 * 29.99781 * 8 7 5 10 10 C 1.53004 * 109.46872 * 269.99688 * 8 7 5 11 11 C 1.50704 * 109.47317 * 149.99763 * 8 7 5 12 12 H 1.08000 * 119.99359 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00065 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99785 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99915 * 179.97438 * 13 11 8 16 16 H 1.48510 * 109.46925 * 59.99892 * 15 13 11 17 17 H 1.48495 * 109.47074 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47099 * 300.00143 * 15 13 11 19 19 C 1.37843 * 105.95438 * 359.73228 * 4 3 2 20 20 C 1.50702 * 125.89464 * 179.97438 * 19 4 3 21 21 N 1.34622 * 108.20521 * 0.02562 * 19 4 3 22 22 C 1.46497 * 124.80820 * 179.97438 * 21 19 4 23 23 C 1.50703 * 109.47215 * 90.00318 * 22 21 19 24 24 C 1.38225 * 119.61869 * 124.99788 * 23 22 21 25 25 C 1.38635 * 119.15939 * 179.97438 * 24 23 22 26 26 C 1.38675 * 118.41956 * 0.02562 * 25 24 23 27 27 C 1.38186 * 119.16332 * 0.27967 * 26 25 24 28 28 N 1.31860 * 119.61591 * 304.98143 * 23 22 21 29 29 H 1.08998 * 109.47096 * 270.21311 * 1 2 3 30 30 H 1.08998 * 109.46497 * 30.21208 * 1 2 3 31 31 H 1.08996 * 109.47014 * 150.20883 * 1 2 3 32 32 H 1.07995 * 126.81725 * 359.97223 * 3 2 1 33 33 H 1.09000 * 109.46948 * 299.99609 * 10 8 7 34 34 H 1.08991 * 109.47088 * 60.00381 * 10 8 7 35 35 H 1.09004 * 109.46547 * 180.02562 * 10 8 7 36 36 H 0.96998 * 119.99631 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.47111 * 270.00561 * 20 19 4 38 38 H 1.09001 * 109.46758 * 30.00868 * 20 19 4 39 39 H 1.09001 * 109.46475 * 150.00288 * 20 19 4 40 40 H 1.09005 * 109.47411 * 330.00235 * 22 21 19 41 41 H 1.09003 * 109.47642 * 210.00220 * 22 21 19 42 42 H 1.07997 * 120.42054 * 0.02562 * 24 23 22 43 43 H 1.07998 * 120.78847 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.41399 * 179.97438 * 26 25 24 45 45 H 1.07999 * 119.61418 * 179.70216 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2869 1.0950 0.0000 4 6 3.6737 0.6151 -0.0060 5 6 4.8949 1.4354 -0.0140 6 8 5.9863 0.9005 -0.0188 7 8 4.8034 2.7802 -0.0160 8 6 6.0494 3.5256 -0.0245 9 1 6.8152 2.9474 -0.5417 10 6 6.4953 3.7902 1.4150 11 6 5.8447 4.8381 -0.7363 12 1 4.8752 5.0869 -1.1420 13 6 6.8951 5.7212 -0.8695 14 7 8.0755 5.4184 -0.3750 15 14 6.6416 7.3478 -1.7524 16 1 5.5976 8.1354 -1.0487 17 1 7.9155 8.1107 -1.7599 18 1 6.2097 7.0905 -3.1497 19 6 3.5983 -0.7613 -0.0029 20 6 4.7690 -1.7103 -0.0074 21 7 2.2984 -1.1113 0.0037 22 6 1.8037 -2.4902 0.0081 23 6 1.6406 -2.9608 1.4305 24 6 0.4197 -3.4537 1.8512 25 6 0.2804 -3.8846 3.1615 26 6 1.3792 -3.8026 4.0035 27 6 2.5664 -3.2925 3.5137 28 7 2.6644 -2.8980 2.2591 29 1 -0.3633 0.0038 1.0276 30 1 -0.3632 0.8881 -0.5171 31 1 -0.3633 -0.8918 -0.5106 32 1 1.9582 2.1237 -0.0004 33 1 5.7295 4.3684 1.9320 34 1 6.6434 2.8409 1.9297 35 1 7.4305 4.3502 1.4085 36 1 8.8146 6.0396 -0.4690 37 1 5.0457 -1.9409 -1.0361 38 1 5.6144 -1.2467 0.5011 39 1 4.4935 -2.6294 0.5097 40 1 2.5163 -3.1336 -0.5080 41 1 0.8409 -2.5326 -0.5012 42 1 -0.4149 -3.5033 1.1676 43 1 -0.6614 -4.2747 3.5180 44 1 1.3065 -4.1288 5.0305 45 1 3.4253 -3.2209 4.1645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:16 Heat of formation + Delta-G solvation = -30.617108 kcal Electronic energy + Delta-G solvation = -27468.918371 eV Core-core repulsion = 23644.330420 eV Total energy + Delta-G solvation = -3824.587950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.56935 -41.03848 -40.61909 -37.40773 -35.30667 -34.91610 -33.66998 -33.26676 -32.01314 -31.40852 -30.01315 -27.88450 -27.44918 -26.02327 -24.50482 -24.21673 -23.12309 -22.40661 -21.03632 -19.72417 -18.57192 -18.37418 -17.95795 -17.33412 -17.04911 -16.86747 -16.70883 -16.49097 -16.18955 -15.64688 -15.01660 -14.82062 -14.58022 -14.40902 -14.29048 -14.06357 -13.98753 -13.91978 -13.70326 -13.49632 -13.20002 -13.15914 -13.01182 -12.94818 -12.93491 -12.80842 -12.48215 -12.39216 -12.32462 -12.14683 -11.53670 -11.23420 -10.97138 -10.82573 -10.58925 -10.42797 -10.03122 -9.63474 -8.95208 -8.27640 -6.44942 0.05644 0.36095 0.56664 1.37067 1.40406 1.46013 1.53810 1.72540 2.26072 2.39375 2.54016 2.86016 3.02141 3.20897 3.59946 3.80820 3.88481 3.94258 4.07587 4.13125 4.20142 4.24556 4.32653 4.36646 4.51457 4.56605 4.64753 4.66866 4.70874 4.78232 4.81393 4.83314 4.83955 4.97090 5.06225 5.12077 5.14610 5.19380 5.26578 5.32917 5.48583 5.63464 5.75193 5.76374 5.93324 6.07643 6.15678 6.33109 6.61043 7.03021 7.11399 7.29774 8.80612 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021925 B = 0.002662 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.771841 B =10515.751775 C =10998.450698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 C -0.174 4.174 4 C -0.267 4.267 5 C 0.519 3.481 6 O -0.565 6.565 7 O -0.363 6.363 8 C 0.219 3.781 9 H 0.004 0.996 10 C -0.139 4.139 11 C -0.549 4.549 12 H 0.065 0.935 13 C 0.014 3.986 14 N -0.918 5.918 15 Si 0.987 3.013 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.268 1.268 19 C 0.136 3.864 20 C -0.085 4.085 21 N -0.418 5.418 22 C 0.145 3.855 23 C 0.080 3.920 24 C -0.149 4.149 25 C -0.076 4.076 26 C -0.166 4.166 27 C 0.077 3.923 28 N -0.505 5.505 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.042 0.958 34 H 0.018 0.982 35 H 0.084 0.916 36 H 0.272 0.728 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.150 0.850 42 H 0.172 0.828 43 H 0.169 0.831 44 H 0.159 0.841 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.759 -23.196 5.144 32.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.197 4.197 4 C -0.275 4.275 5 C 0.369 3.631 6 O -0.460 6.460 7 O -0.279 6.279 8 C 0.165 3.835 9 H 0.022 0.978 10 C -0.197 4.197 11 C -0.587 4.587 12 H 0.083 0.917 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.810 3.190 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.193 1.193 19 C 0.017 3.983 20 C -0.143 4.143 21 N -0.094 5.094 22 C 0.024 3.976 23 C -0.058 4.058 24 C -0.169 4.169 25 C -0.102 4.102 26 C -0.185 4.185 27 C -0.080 4.080 28 N -0.215 5.215 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.159 0.841 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.168 0.832 42 H 0.189 0.811 43 H 0.186 0.814 44 H 0.177 0.823 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.612 -23.218 4.859 32.090 hybrid contribution 0.397 0.781 0.250 0.911 sum -21.215 -22.437 5.109 31.299 Atomic orbital electron populations 1.20456 0.84090 1.05118 1.03615 1.20703 0.95354 0.84136 1.08449 1.21929 0.90044 0.98914 1.08781 1.19653 0.91617 0.92327 1.23930 1.20860 0.88858 0.81811 0.71617 1.90668 1.31008 1.74030 1.50250 1.86541 1.39794 1.18636 1.82965 1.20299 0.79043 0.89399 0.94725 0.97821 1.21963 1.02731 0.98749 0.96224 1.21261 0.98041 1.01575 1.37792 0.91694 1.25902 0.94005 1.02624 0.95966 1.70025 1.01944 1.38237 1.45396 0.85178 0.77991 0.77107 0.78760 1.18742 1.19843 1.19274 1.20483 0.86434 0.92283 0.99067 1.20493 0.93129 0.97408 1.03229 1.43496 1.03731 1.06963 1.55173 1.21156 1.04592 0.78962 0.92858 1.21497 0.90756 0.97744 0.95817 1.22274 0.97788 0.98892 0.97957 1.22041 0.99878 0.95333 0.92943 1.22514 0.93673 0.99721 1.02623 1.23024 0.98836 0.94637 0.91461 1.67356 1.33389 1.15333 1.05384 0.90327 0.89287 0.88566 0.84058 0.93842 0.96307 0.89758 0.91917 0.89886 0.91559 0.88613 0.86579 0.83188 0.81090 0.81377 0.82350 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.05 71.24 0.72 -0.32 16 2 C 0.02 0.53 6.84 40.98 0.28 0.81 16 3 C -0.17 -6.17 10.89 23.62 0.26 -5.91 16 4 C -0.27 -11.39 6.33 -18.82 -0.12 -11.51 16 5 C 0.52 27.55 7.93 70.15 0.56 28.10 16 6 O -0.56 -32.03 14.14 19.68 0.28 -31.76 16 7 O -0.36 -20.91 9.77 -56.99 -0.56 -21.46 16 8 C 0.22 13.53 2.57 29.85 0.08 13.60 16 9 H 0.00 0.27 7.16 -2.39 -0.02 0.25 16 10 C -0.14 -8.03 9.33 71.98 0.67 -7.36 16 11 C -0.55 -34.02 8.90 25.60 0.23 -33.79 16 12 H 0.06 3.94 7.81 -2.91 -0.02 3.92 16 13 C 0.01 0.85 5.30 84.65 0.45 1.29 16 14 N -0.92 -55.91 11.32 21.45 0.24 -55.67 16 15 Si 0.99 45.34 29.54 68.60 2.03 47.36 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C 0.14 4.60 6.92 42.04 0.29 4.89 16 20 C -0.09 -2.64 9.28 71.24 0.66 -1.98 16 21 N -0.42 -10.28 2.62 -498.62 -1.31 -11.59 16 22 C 0.14 2.05 5.75 85.63 0.49 2.54 16 23 C 0.08 1.26 6.39 42.55 0.27 1.53 16 24 C -0.15 -1.31 9.71 22.36 0.22 -1.10 16 25 C -0.08 -0.60 10.18 22.47 0.23 -0.37 16 26 C -0.17 -1.81 10.11 22.36 0.23 -1.58 16 27 C 0.08 1.35 11.18 84.67 0.95 2.29 16 28 N -0.50 -10.92 9.35 -183.88 -1.72 -12.64 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 0.66 6.92 -2.39 -0.02 0.64 16 32 H 0.14 5.03 8.06 -2.91 -0.02 5.01 16 33 H 0.04 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 5.07 6.07 -2.38 -0.01 5.06 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.07 2.53 6.51 -2.39 -0.02 2.51 16 39 H 0.10 2.45 6.71 -2.39 -0.02 2.44 16 40 H 0.12 1.46 7.49 -2.38 -0.02 1.44 16 41 H 0.15 0.81 6.60 -2.39 -0.02 0.80 16 42 H 0.17 0.21 7.95 -2.91 -0.02 0.19 16 43 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 44 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 45 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -86.30 380.18 6.41 -79.89 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.00 Total: 14.73 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 6.45 Total: -8.86 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.78 Total: -79.90 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -0.28 Total: -53.22 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -86.30 6.41 -79.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.270 kcal (2) G-P(sol) polarization free energy of solvation -86.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds