Wall clock time and date at job start Tue Mar 31 2020 15:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.79961 * 2 1 4 4 O 1.20925 * 111.59989 * 180.25381 * 3 2 1 5 5 C 1.34044 * 111.56762 * 359.74320 * 4 3 2 6 6 C 1.50696 * 126.77641 * 180.02562 * 5 4 3 7 7 C 1.35449 * 106.44904 * 0.02562 * 5 4 3 8 8 C 1.50693 * 128.00886 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47159 * 359.97438 * 8 7 5 10 10 C 1.52998 * 109.47372 * 120.00149 * 8 7 5 11 11 C 1.53002 * 109.46910 * 239.99713 * 8 7 5 12 12 C 1.50697 * 109.47082 * 174.99829 * 11 8 7 13 13 O 1.21285 * 120.00263 * 0.02562 * 12 11 8 14 14 N 1.34784 * 120.00155 * 179.97438 * 12 11 8 15 15 C 1.39240 * 120.00003 * 184.03416 * 14 12 11 16 16 C 1.39473 * 119.83330 * 324.50131 * 15 14 12 17 17 C 1.36373 * 120.16985 * 179.71895 * 16 15 14 18 18 C 1.40870 * 119.82617 * 0.57481 * 17 16 15 19 19 C 1.41150 * 120.16468 * 179.67480 * 18 17 16 20 20 H 1.07997 * 120.00243 * 214.80183 * 19 18 17 21 21 C 1.39904 * 119.99822 * 34.80101 * 19 18 17 22 22 N 1.30870 * 120.00328 * 355.56364 * 21 19 18 23 23 Si 1.86806 * 119.99735 * 175.55579 * 21 19 18 24 24 H 1.48499 * 109.47171 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47026 * 120.00590 * 23 21 19 26 26 H 1.48503 * 109.47366 * 240.00094 * 23 21 19 27 27 C 1.40868 * 119.67222 * 359.69893 * 18 17 16 28 28 C 1.36374 * 119.82724 * 359.97438 * 27 18 17 29 29 H 1.08999 * 109.47502 * 270.16248 * 1 2 3 30 30 H 1.09008 * 109.47417 * 30.16829 * 1 2 3 31 31 H 1.09001 * 109.47353 * 150.16147 * 1 2 3 32 32 H 1.09003 * 109.47016 * 270.00524 * 6 5 4 33 33 H 1.08999 * 109.47170 * 30.00359 * 6 5 4 34 34 H 1.08998 * 109.47103 * 150.00408 * 6 5 4 35 35 H 1.09002 * 109.47051 * 299.99603 * 10 8 7 36 36 H 1.08998 * 109.47616 * 59.99499 * 10 8 7 37 37 H 1.08996 * 109.47510 * 180.02562 * 10 8 7 38 38 H 1.08998 * 109.47293 * 55.00099 * 11 8 7 39 39 H 1.09004 * 109.47178 * 294.99760 * 11 8 7 40 40 H 0.96993 * 119.99480 * 4.30767 * 14 12 11 41 41 H 1.08003 * 119.91540 * 0.02562 * 16 15 14 42 42 H 1.08002 * 120.08889 * 180.24701 * 17 16 15 43 43 H 0.97000 * 120.00314 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.09073 * 179.97438 * 27 18 17 45 45 H 1.07998 * 119.91849 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6068 -0.0035 6 6 4.9021 -1.3696 -0.0078 7 6 2.3539 -1.1321 0.0027 8 6 1.9591 -2.5864 0.0063 9 1 2.8556 -3.2063 0.0026 10 6 1.1349 -2.8881 1.2595 11 6 1.1238 -2.8910 -1.2389 12 6 0.8326 -4.3683 -1.2994 13 8 1.2514 -5.1050 -0.4317 14 7 0.1057 -4.8709 -2.3171 15 6 -0.2346 -6.2210 -2.3294 16 6 0.6614 -7.1670 -1.8319 17 6 0.3328 -8.4905 -1.8353 18 6 -0.9104 -8.9024 -2.3542 19 6 -1.2550 -10.2712 -2.3676 20 1 -1.8430 -10.6721 -3.1799 21 6 -0.8349 -11.1084 -1.3284 22 7 -0.0505 -10.6433 -0.3898 23 14 -1.3939 -12.8902 -1.2807 24 1 -2.2688 -13.1660 -2.4484 25 1 -0.2078 -13.7825 -1.3296 26 1 -2.1488 -13.1388 -0.0263 27 6 -1.8078 -7.9416 -2.8602 28 6 -1.4678 -6.6210 -2.8439 29 1 -0.3634 0.0029 1.0276 30 1 -0.3634 0.8885 -0.5165 31 1 -0.3634 -0.8914 -0.5113 32 1 5.2111 -1.5551 -1.0365 33 1 5.6681 -0.7852 0.5019 34 1 4.7671 -2.3202 0.5081 35 1 1.7300 -2.6711 2.1466 36 1 0.2384 -2.2682 1.2628 37 1 0.8497 -3.9401 1.2623 38 1 1.6771 -2.5931 -2.1295 39 1 0.1859 -2.3374 -1.1917 40 1 -0.1768 -4.2928 -3.0429 41 1 1.6160 -6.8500 -1.4384 42 1 1.0260 -9.2216 -1.4461 43 1 0.2405 -11.2237 0.3309 44 1 -2.7625 -8.2499 -3.2599 45 1 -2.1548 -5.8832 -3.2310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125249242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:10 Heat of formation + Delta-G solvation = 30.770819 kcal Electronic energy + Delta-G solvation = -27116.585437 eV Core-core repulsion = 23294.659466 eV Total energy + Delta-G solvation = -3821.925970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.07823 -39.88253 -37.62719 -36.45367 -34.47372 -33.93648 -32.93417 -32.52686 -29.59562 -29.28561 -28.96486 -27.88702 -27.61486 -24.93402 -23.82220 -21.64649 -21.18386 -20.50201 -20.23858 -19.46223 -17.81013 -17.30622 -17.02780 -16.91638 -16.19198 -15.53748 -15.05153 -14.70032 -14.45671 -13.98901 -13.76173 -13.63337 -13.56341 -13.33232 -13.24583 -13.04486 -12.88474 -12.74112 -12.61558 -12.35402 -12.05959 -11.79220 -11.56094 -11.46480 -11.36650 -11.31997 -11.14556 -10.91044 -10.64068 -10.50460 -9.97865 -9.90979 -9.87224 -9.46385 -9.26864 -9.00832 -8.71425 -7.53739 -6.90304 -6.60584 -4.34348 1.29411 2.03162 2.55648 2.93666 2.98327 3.08079 3.10022 3.14949 3.32290 3.67796 3.97992 4.03619 4.27748 4.53399 4.70954 4.72108 4.89039 4.94537 5.09524 5.15514 5.17063 5.23718 5.34558 5.37624 5.49206 5.52638 5.59725 5.65109 5.71697 5.81435 5.92420 6.01713 6.11810 6.20181 6.36702 6.44290 6.79966 6.98534 7.03405 7.19080 7.28730 7.62261 7.66269 7.96838 8.08499 8.12488 8.18127 8.32758 8.65997 8.75550 8.92612 9.00365 10.30299 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.002300 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.674962 B =12169.312758 C =12634.543828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.027 3.973 3 N -0.371 5.371 4 O 0.093 5.907 5 C -0.032 4.032 6 C -0.075 4.075 7 C -0.189 4.189 8 C 0.006 3.994 9 H 0.092 0.908 10 C -0.152 4.152 11 C -0.136 4.136 12 C 0.499 3.501 13 O -0.523 6.523 14 N -0.654 5.654 15 C 0.005 3.995 16 C -0.093 4.093 17 C -0.144 4.144 18 C 0.099 3.901 19 C -0.463 4.463 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.807 5.807 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.275 1.275 27 C -0.204 4.204 28 C -0.114 4.114 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.394 0.606 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.278 0.722 44 H 0.096 0.904 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 17.081 0.111 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 N -0.077 5.077 4 O 0.029 5.971 5 C -0.095 4.095 6 C -0.133 4.133 7 C -0.193 4.193 8 C -0.013 4.013 9 H 0.110 0.890 10 C -0.209 4.209 11 C -0.176 4.176 12 C 0.286 3.714 13 O -0.400 6.400 14 N -0.297 5.297 15 C -0.087 4.087 16 C -0.113 4.113 17 C -0.165 4.165 18 C 0.097 3.903 19 C -0.493 4.493 20 H 0.094 0.906 21 C -0.147 4.147 22 N -0.434 5.434 23 Si 0.739 3.261 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.224 4.224 28 C -0.134 4.134 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.227 0.773 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.547 17.815 0.971 18.684 hybrid contribution -0.604 -1.113 -0.222 1.285 sum 4.944 16.702 0.749 17.435 Atomic orbital electron populations 1.20331 0.86182 1.03774 1.03558 1.23399 0.98820 0.88452 1.02554 1.73824 0.89338 1.24006 1.20541 1.84785 1.21616 1.22590 1.68125 1.24268 0.98298 0.83690 1.03255 1.20371 0.89929 0.98764 1.04215 1.21036 0.91491 0.97449 1.09358 1.19153 0.99631 0.87628 0.94894 0.88975 1.21981 0.99065 1.04143 0.95689 1.21776 1.02032 0.93996 0.99761 1.20465 0.79392 0.89842 0.81717 1.90685 1.50677 1.60315 1.38313 1.43029 1.53866 1.09564 1.23259 1.17279 0.96437 0.81399 1.13633 1.20627 0.98021 0.92896 0.99746 1.21309 0.97448 0.94146 1.03549 1.17735 0.90189 0.93087 0.89296 1.19515 1.29799 0.93234 1.06782 0.90616 1.25892 0.93376 1.00472 0.94917 1.69792 1.26664 1.36892 1.10079 0.86165 0.79190 0.81650 0.79057 1.18629 1.19990 1.19998 1.20692 0.99373 0.92103 1.10268 1.20077 0.93909 0.96037 1.03377 0.90064 0.90598 0.89680 0.89349 0.89908 0.88750 0.92959 0.93075 0.89378 0.89220 0.88920 0.77277 0.87495 0.85185 0.91141 0.88577 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.13 36.01 0.33 -0.38 16 2 C 0.03 0.30 7.20 -82.10 -0.59 -0.29 16 3 N -0.37 -4.70 12.07 33.42 0.40 -4.29 16 4 O 0.09 1.09 11.20 17.17 0.19 1.28 16 5 C -0.03 -0.32 7.49 -35.31 -0.26 -0.58 16 6 C -0.08 -0.50 10.17 36.00 0.37 -0.13 16 7 C -0.19 -2.04 4.93 -104.42 -0.51 -2.56 16 8 C 0.01 0.07 2.33 -91.77 -0.21 -0.14 16 9 H 0.09 1.08 6.94 -51.93 -0.36 0.72 16 10 C -0.15 -1.84 8.84 37.16 0.33 -1.52 16 11 C -0.14 -1.50 5.03 -27.88 -0.14 -1.64 16 12 C 0.50 7.90 7.37 -10.98 -0.08 7.82 16 13 O -0.52 -10.37 11.41 5.55 0.06 -10.30 16 14 N -0.65 -10.69 5.30 -9.74 -0.05 -10.74 16 15 C 0.00 0.10 6.30 -83.57 -0.53 -0.43 16 16 C -0.09 -2.24 8.61 -39.79 -0.34 -2.58 16 17 C -0.14 -3.81 8.61 -39.26 -0.34 -4.14 16 18 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 19 C -0.46 -12.22 9.02 -37.85 -0.34 -12.56 16 20 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 21 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 22 N -0.81 -21.29 10.60 55.55 0.59 -20.70 16 23 Si 0.91 18.95 29.56 -169.99 -5.03 13.92 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 C -0.20 -4.86 9.74 -39.26 -0.38 -5.24 16 28 C -0.11 -2.42 9.90 -39.79 -0.39 -2.81 16 29 H 0.08 0.65 8.12 -51.93 -0.42 0.22 16 30 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.08 0.66 5.35 -51.93 -0.28 0.38 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.60 7.39 -51.93 -0.38 0.22 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.55 6.75 -51.93 -0.35 0.20 16 37 H 0.09 1.33 5.95 -51.93 -0.31 1.02 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.87 5.52 -51.93 -0.29 0.58 16 40 H 0.39 4.92 8.82 -40.82 -0.36 4.56 16 41 H 0.11 2.56 6.25 -52.48 -0.33 2.24 16 42 H 0.13 3.59 6.13 -52.49 -0.32 3.27 16 43 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 44 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -31.14 367.28 -7.99 -39.13 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.90 Total: 9.66 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -3.79 Total: -23.50 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.94 Total: -35.73 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.26 Total: -9.02 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.14 -7.99 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125249242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.902 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds