Wall clock time and date at job start Tue Mar 31 2020 15:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.79961 * 2 1 4 4 O 1.20925 * 111.59989 * 180.25381 * 3 2 1 5 5 C 1.34044 * 111.56762 * 359.74320 * 4 3 2 6 6 C 1.50696 * 126.77641 * 180.02562 * 5 4 3 7 7 C 1.35449 * 106.44904 * 0.02562 * 5 4 3 8 8 C 1.50693 * 128.00886 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47159 * 359.97438 * 8 7 5 10 10 C 1.52998 * 109.47372 * 120.00149 * 8 7 5 11 11 C 1.53002 * 109.46910 * 239.99713 * 8 7 5 12 12 C 1.50697 * 109.47082 * 174.99829 * 11 8 7 13 13 O 1.21285 * 120.00263 * 0.02562 * 12 11 8 14 14 N 1.34784 * 120.00155 * 179.97438 * 12 11 8 15 15 C 1.39240 * 120.00003 * 184.03416 * 14 12 11 16 16 C 1.39473 * 119.83330 * 324.50131 * 15 14 12 17 17 C 1.36373 * 120.16985 * 179.71895 * 16 15 14 18 18 C 1.40870 * 119.82617 * 0.57481 * 17 16 15 19 19 C 1.41150 * 120.16468 * 179.67480 * 18 17 16 20 20 H 1.07997 * 120.00243 * 214.80183 * 19 18 17 21 21 C 1.39904 * 119.99822 * 34.80101 * 19 18 17 22 22 N 1.30870 * 120.00328 * 355.56364 * 21 19 18 23 23 Si 1.86806 * 119.99735 * 175.55579 * 21 19 18 24 24 H 1.48499 * 109.47171 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47026 * 120.00590 * 23 21 19 26 26 H 1.48503 * 109.47366 * 240.00094 * 23 21 19 27 27 C 1.40868 * 119.67222 * 359.69893 * 18 17 16 28 28 C 1.36374 * 119.82724 * 359.97438 * 27 18 17 29 29 H 1.08999 * 109.47502 * 270.16248 * 1 2 3 30 30 H 1.09008 * 109.47417 * 30.16829 * 1 2 3 31 31 H 1.09001 * 109.47353 * 150.16147 * 1 2 3 32 32 H 1.09003 * 109.47016 * 270.00524 * 6 5 4 33 33 H 1.08999 * 109.47170 * 30.00359 * 6 5 4 34 34 H 1.08998 * 109.47103 * 150.00408 * 6 5 4 35 35 H 1.09002 * 109.47051 * 299.99603 * 10 8 7 36 36 H 1.08998 * 109.47616 * 59.99499 * 10 8 7 37 37 H 1.08996 * 109.47510 * 180.02562 * 10 8 7 38 38 H 1.08998 * 109.47293 * 55.00099 * 11 8 7 39 39 H 1.09004 * 109.47178 * 294.99760 * 11 8 7 40 40 H 0.96993 * 119.99480 * 4.30767 * 14 12 11 41 41 H 1.08003 * 119.91540 * 0.02562 * 16 15 14 42 42 H 1.08002 * 120.08889 * 180.24701 * 17 16 15 43 43 H 0.97000 * 120.00314 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.09073 * 179.97438 * 27 18 17 45 45 H 1.07998 * 119.91849 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6068 -0.0035 6 6 4.9021 -1.3696 -0.0078 7 6 2.3539 -1.1321 0.0027 8 6 1.9591 -2.5864 0.0063 9 1 2.8556 -3.2063 0.0026 10 6 1.1349 -2.8881 1.2595 11 6 1.1238 -2.8910 -1.2389 12 6 0.8326 -4.3683 -1.2994 13 8 1.2514 -5.1050 -0.4317 14 7 0.1057 -4.8709 -2.3171 15 6 -0.2346 -6.2210 -2.3294 16 6 0.6614 -7.1670 -1.8319 17 6 0.3328 -8.4905 -1.8353 18 6 -0.9104 -8.9024 -2.3542 19 6 -1.2550 -10.2712 -2.3676 20 1 -1.8430 -10.6721 -3.1799 21 6 -0.8349 -11.1084 -1.3284 22 7 -0.0505 -10.6433 -0.3898 23 14 -1.3939 -12.8902 -1.2807 24 1 -2.2688 -13.1660 -2.4484 25 1 -0.2078 -13.7825 -1.3296 26 1 -2.1488 -13.1388 -0.0263 27 6 -1.8078 -7.9416 -2.8602 28 6 -1.4678 -6.6210 -2.8439 29 1 -0.3634 0.0029 1.0276 30 1 -0.3634 0.8885 -0.5165 31 1 -0.3634 -0.8914 -0.5113 32 1 5.2111 -1.5551 -1.0365 33 1 5.6681 -0.7852 0.5019 34 1 4.7671 -2.3202 0.5081 35 1 1.7300 -2.6711 2.1466 36 1 0.2384 -2.2682 1.2628 37 1 0.8497 -3.9401 1.2623 38 1 1.6771 -2.5931 -2.1295 39 1 0.1859 -2.3374 -1.1917 40 1 -0.1768 -4.2928 -3.0429 41 1 1.6160 -6.8500 -1.4384 42 1 1.0260 -9.2216 -1.4461 43 1 0.2405 -11.2237 0.3309 44 1 -2.7625 -8.2499 -3.2599 45 1 -2.1548 -5.8832 -3.2310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125249242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:09 Heat of formation + Delta-G solvation = 13.565680 kcal Electronic energy + Delta-G solvation = -27117.331507 eV Core-core repulsion = 23294.659466 eV Total energy + Delta-G solvation = -3822.672041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.90637 -41.27874 -39.23815 -37.53980 -36.09670 -34.73255 -34.65071 -33.39800 -31.42077 -30.96801 -29.71197 -28.97732 -28.43844 -26.60775 -24.84259 -23.26324 -22.81985 -21.66619 -21.06224 -20.82517 -19.20839 -18.67800 -18.36553 -17.95182 -17.43267 -17.04785 -16.47092 -15.85012 -15.73417 -15.36335 -14.97727 -14.76838 -14.44688 -14.40335 -14.24639 -14.02715 -13.88107 -13.87340 -13.73876 -13.60855 -13.41414 -13.28014 -13.13125 -12.86825 -12.64488 -12.42375 -12.29432 -12.24629 -12.23040 -11.69503 -11.64444 -11.48218 -11.16857 -10.79512 -10.68602 -10.33681 -10.05915 -9.41214 -8.70363 -8.47767 -6.30396 0.50167 0.84972 1.16321 1.21664 1.39568 1.44979 1.55033 1.86322 2.17953 2.24564 2.42601 2.84189 3.24120 3.54822 3.63561 3.72477 3.82340 4.00486 4.17673 4.25622 4.37885 4.44701 4.47405 4.52937 4.58389 4.66907 4.69246 4.74548 4.80895 4.82590 4.95327 5.01129 5.06777 5.15522 5.16806 5.20638 5.22405 5.33275 5.37060 5.44324 5.51182 5.74394 5.91328 6.12515 6.18919 6.39435 6.73916 6.79278 6.98927 7.05569 7.31886 7.49218 8.45105 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.002300 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.674962 B =12169.312758 C =12634.543828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.026 3.974 3 N -0.399 5.399 4 O 0.081 5.919 5 C -0.024 4.024 6 C -0.077 4.077 7 C -0.202 4.202 8 C 0.013 3.987 9 H 0.084 0.916 10 C -0.149 4.149 11 C -0.122 4.122 12 C 0.499 3.501 13 O -0.565 6.565 14 N -0.648 5.648 15 C 0.025 3.975 16 C -0.107 4.107 17 C -0.168 4.168 18 C 0.063 3.937 19 C -0.497 4.497 20 H 0.077 0.923 21 C 0.022 3.978 22 N -0.846 5.846 23 Si 0.989 3.011 24 H -0.255 1.255 25 H -0.268 1.268 26 H -0.270 1.270 27 C -0.211 4.211 28 C -0.110 4.110 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.418 0.582 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.281 0.719 44 H 0.110 0.890 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 18.899 -0.828 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 N -0.108 5.108 4 O 0.020 5.980 5 C -0.087 4.087 6 C -0.134 4.134 7 C -0.206 4.206 8 C -0.006 4.006 9 H 0.102 0.898 10 C -0.206 4.206 11 C -0.161 4.161 12 C 0.288 3.712 13 O -0.444 6.444 14 N -0.293 5.293 15 C -0.069 4.069 16 C -0.127 4.127 17 C -0.189 4.189 18 C 0.061 3.939 19 C -0.528 4.528 20 H 0.095 0.905 21 C -0.189 4.189 22 N -0.475 5.475 23 Si 0.810 3.190 24 H -0.179 1.179 25 H -0.193 1.193 26 H -0.195 1.195 27 C -0.231 4.231 28 C -0.130 4.130 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.255 0.745 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.128 0.872 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.769 19.686 0.000 20.256 hybrid contribution -0.286 -1.472 0.081 1.502 sum 4.483 18.215 0.081 18.758 Atomic orbital electron populations 1.20463 0.84595 1.04733 1.04301 1.23816 0.99925 0.88153 1.01383 1.73825 0.89804 1.24941 1.22216 1.84763 1.21463 1.23321 1.68462 1.24837 0.99390 0.83248 1.01243 1.20555 0.88878 0.98567 1.05442 1.20926 0.91883 0.96845 1.10910 1.19011 0.99201 0.87906 0.94485 0.89751 1.21910 0.99939 1.02209 0.96508 1.21769 1.03619 0.90005 1.00754 1.21329 0.77736 0.91642 0.80493 1.90696 1.51933 1.61924 1.39798 1.42971 1.54019 1.07752 1.24554 1.17341 0.95547 0.83325 1.10658 1.20665 0.98597 0.92829 1.00604 1.21181 0.97689 0.94782 1.05227 1.18062 0.90856 0.94167 0.90814 1.19770 1.31213 0.94064 1.07713 0.90470 1.26807 0.93075 1.04878 0.94117 1.69907 1.28053 1.38582 1.10909 0.85057 0.78855 0.75914 0.79200 1.17852 1.19279 1.19507 1.20956 0.99501 0.92933 1.09723 1.20446 0.94296 0.95989 1.02224 0.89400 0.89808 0.88500 0.87827 0.88265 0.88568 0.92813 0.91652 0.92571 0.86599 0.86388 0.74457 0.88141 0.87806 0.90823 0.87227 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 9.13 71.24 0.65 -0.56 16 2 C 0.03 0.53 7.20 43.58 0.31 0.84 16 3 N -0.40 -9.48 12.07 -49.56 -0.60 -10.07 16 4 O 0.08 1.78 11.20 71.60 0.80 2.58 16 5 C -0.02 -0.43 7.49 25.04 0.19 -0.24 16 6 C -0.08 -0.86 10.17 71.23 0.72 -0.13 16 7 C -0.20 -3.90 4.93 -19.74 -0.10 -4.00 16 8 C 0.01 0.27 2.33 -11.54 -0.03 0.25 16 9 H 0.08 1.88 6.94 -2.39 -0.02 1.86 16 10 C -0.15 -3.44 8.84 71.98 0.64 -2.80 16 11 C -0.12 -2.30 5.03 29.85 0.15 -2.15 16 12 C 0.50 14.79 7.37 87.66 0.65 15.43 16 13 O -0.56 -22.31 11.41 -3.04 -0.03 -22.34 16 14 N -0.65 -19.32 5.30 -303.11 -1.61 -20.93 16 15 C 0.02 1.03 6.30 38.56 0.24 1.27 16 16 C -0.11 -5.26 8.61 22.13 0.19 -5.07 16 17 C -0.17 -9.31 8.61 22.48 0.19 -9.12 16 18 C 0.06 3.45 5.55 -21.28 -0.12 3.33 16 19 C -0.50 -27.14 9.02 23.39 0.21 -26.93 16 20 H 0.08 4.01 7.85 -2.91 -0.02 3.99 16 21 C 0.02 1.17 5.42 85.24 0.46 1.63 16 22 N -0.85 -46.77 10.60 21.82 0.23 -46.54 16 23 Si 0.99 39.68 29.56 68.60 2.03 41.71 16 24 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 25 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 26 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 27 C -0.21 -9.94 9.74 22.48 0.22 -9.72 16 28 C -0.11 -4.40 9.90 22.13 0.22 -4.18 16 29 H 0.09 1.16 8.12 -2.39 -0.02 1.15 16 30 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.10 1.12 5.35 -2.39 -0.01 1.11 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 1.07 7.39 -2.39 -0.02 1.05 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.29 6.75 -2.39 -0.02 1.27 16 37 H 0.06 1.69 5.95 -2.39 -0.01 1.68 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.12 1.69 5.52 -2.38 -0.01 1.68 16 40 H 0.42 8.63 8.82 -92.71 -0.82 7.81 16 41 H 0.10 5.00 6.25 -2.91 -0.02 4.98 16 42 H 0.10 6.17 6.13 -2.91 -0.02 6.16 16 43 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 44 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 45 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -71.54 367.28 5.85 -65.70 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.22 Total: 32.04 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.80 Total: -42.14 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -1.97 Total: -77.54 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.77 Total: -19.76 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -71.54 5.85 -65.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125249242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.264 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds