Wall clock time and date at job start Tue Mar 31 2020 15:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38148 * 126.31291 * 2 1 4 4 C 1.47265 * 126.42263 * 0.02562 * 3 2 1 5 5 O 1.21528 * 120.00385 * 0.02562 * 4 3 2 6 6 O 1.34764 * 119.99820 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99626 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47492 * 329.99408 * 7 6 4 9 9 C 1.53000 * 109.47489 * 89.99958 * 7 6 4 10 10 C 1.50705 * 109.46939 * 209.99972 * 7 6 4 11 11 H 1.08004 * 119.99967 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00304 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00043 * 180.02562 * 12 10 7 14 14 Si 1.86807 * 119.99780 * 0.02562 * 12 10 7 15 15 H 1.48491 * 109.47207 * 89.99827 * 14 12 10 16 16 H 1.48499 * 109.46730 * 209.99983 * 14 12 10 17 17 H 1.48505 * 109.46960 * 329.99393 * 14 12 10 18 18 C 1.41392 * 107.15495 * 180.27693 * 3 2 1 19 19 N 1.30457 * 108.05592 * 359.59366 * 18 3 2 20 20 N 1.34501 * 126.31646 * 180.02562 * 2 1 3 21 21 C 1.40151 * 125.75958 * 359.93480 * 20 2 1 22 22 C 1.38857 * 120.07310 * 309.30351 * 21 20 2 23 23 C 1.38096 * 119.93848 * 179.97438 * 22 21 20 24 24 C 1.50701 * 119.97146 * 180.02562 * 23 22 21 25 25 C 1.38299 * 120.06087 * 0.02562 * 23 22 21 26 26 C 1.38260 * 120.14114 * 359.97438 * 25 23 22 27 27 C 1.38133 * 120.06402 * 359.74712 * 26 25 23 28 28 C 1.50700 * 120.03729 * 180.27830 * 27 26 25 29 29 H 1.08998 * 109.47032 * 84.75459 * 1 2 3 30 30 H 1.09001 * 109.47071 * 204.75074 * 1 2 3 31 31 H 1.08994 * 109.47143 * 324.75417 * 1 2 3 32 32 H 1.08997 * 109.47001 * 300.00037 * 9 7 6 33 33 H 1.09001 * 109.47197 * 179.97438 * 9 7 6 34 34 H 1.09003 * 109.46961 * 59.99743 * 9 7 6 35 35 H 0.97002 * 119.99349 * 180.02562 * 13 12 10 36 36 H 1.07998 * 125.97093 * 179.72295 * 18 3 2 37 37 H 1.08007 * 120.03451 * 359.97438 * 22 21 20 38 38 H 1.09004 * 109.46532 * 89.99910 * 24 23 22 39 39 H 1.08991 * 109.47150 * 209.99971 * 24 23 22 40 40 H 1.09002 * 109.47026 * 330.00500 * 24 23 22 41 41 H 1.08013 * 119.92973 * 180.02562 * 25 23 22 42 42 H 1.07996 * 119.96575 * 180.02562 * 26 25 23 43 43 H 1.09001 * 109.46962 * 274.39901 * 28 27 26 44 44 H 1.09000 * 109.47134 * 34.39547 * 28 27 26 45 45 H 1.08996 * 109.47720 * 154.39815 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1132 0.0000 4 6 1.8881 2.5195 0.0005 5 8 0.7027 2.7875 0.0015 6 8 2.8026 3.5093 0.0010 7 6 2.2997 4.8714 0.0021 8 1 1.3388 4.9044 -0.5116 9 6 2.1233 5.3489 1.4449 10 6 3.2798 5.7693 -0.7080 11 1 4.1899 5.3575 -1.1186 12 6 3.0148 7.1166 -0.8335 13 7 3.8699 7.9000 -1.4536 14 14 1.4410 7.8290 -0.1226 15 1 1.6811 8.2599 1.2779 16 1 1.0160 8.9977 -0.9343 17 1 0.3747 6.7956 -0.1468 18 6 3.6607 0.6492 -0.0065 19 7 3.6357 -0.6551 -0.0014 20 7 2.3036 -1.0838 -0.0005 21 6 1.8723 -2.4172 0.0002 22 6 0.9348 -2.8448 0.9310 23 6 0.5113 -4.1593 0.9288 24 6 -0.5066 -4.6240 1.9383 25 6 1.0205 -5.0496 0.0011 26 6 1.9541 -4.6270 -0.9270 27 6 2.3772 -3.3121 -0.9335 28 6 3.3902 -2.8506 -1.9494 29 1 -0.3633 0.0939 -1.0233 30 1 -0.3633 -0.9333 0.4303 31 1 -0.3633 0.8392 0.5930 32 1 1.4145 4.6995 1.9585 33 1 1.7462 6.3716 1.4457 34 1 3.0842 5.3160 1.9585 35 1 3.6835 8.8479 -1.5415 36 1 4.5467 1.2667 -0.0124 37 1 0.5370 -2.1501 1.6561 38 1 -1.5089 -4.4910 1.5311 39 1 -0.3419 -5.6780 2.1615 40 1 -0.4052 -4.0388 2.8523 41 1 0.6875 -6.0771 0.0011 42 1 2.3495 -5.3245 -1.6504 43 1 4.3949 -3.0527 -1.5783 44 1 3.2346 -3.3852 -2.8864 45 1 3.2738 -1.7801 -2.1182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131971025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:06 Heat of formation + Delta-G solvation = 15.766264 kcal Electronic energy + Delta-G solvation = -27407.388593 eV Core-core repulsion = 23584.811977 eV Total energy + Delta-G solvation = -3822.576616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.88924 -39.79637 -39.10642 -35.80536 -34.63055 -33.71098 -33.10391 -32.00208 -30.65277 -29.75518 -29.44033 -27.57418 -25.30543 -25.22434 -24.04983 -22.80505 -22.23399 -20.95578 -19.80988 -19.33143 -17.74679 -16.81507 -16.53373 -16.20197 -16.11106 -15.64615 -15.33045 -14.92348 -14.59850 -14.33840 -14.15905 -14.08914 -13.56284 -13.48204 -13.18310 -13.10695 -13.02311 -12.73660 -12.61667 -12.39418 -12.29759 -12.23297 -11.97623 -11.81903 -11.71011 -11.57909 -11.45194 -10.88231 -10.85883 -10.19369 -10.06594 -9.90523 -9.70945 -9.55341 -9.14512 -9.07877 -8.90827 -8.65775 -8.49101 -6.19461 -4.21334 0.57242 0.86373 1.53548 2.11426 2.21137 3.17169 3.21160 3.33232 3.35702 3.61208 3.65660 4.29557 4.30315 4.34096 4.40354 4.54602 4.72912 4.74966 4.77519 4.94422 5.11751 5.12954 5.18443 5.24464 5.30745 5.32899 5.38258 5.44849 5.46378 5.60608 5.64040 5.83976 5.85923 5.91780 5.95898 6.07007 6.10021 6.21613 6.33213 6.35203 6.42232 6.50204 6.66994 6.93864 7.08249 7.41439 7.47810 7.56576 8.29120 8.68430 8.88793 9.37951 10.92698 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.002645 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.839170 B =10583.840360 C =11280.761317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.162 3.838 3 C -0.265 4.265 4 C 0.535 3.465 5 O -0.530 6.530 6 O -0.336 6.336 7 C 0.193 3.807 8 H 0.046 0.954 9 C -0.170 4.170 10 C -0.523 4.523 11 H 0.087 0.913 12 C 0.079 3.921 13 N -0.889 5.889 14 Si 0.879 3.121 15 H -0.274 1.274 16 H -0.291 1.291 17 H -0.262 1.262 18 C 0.111 3.889 19 N -0.294 5.294 20 N -0.319 5.319 21 C 0.147 3.853 22 C -0.116 4.116 23 C -0.078 4.078 24 C -0.114 4.114 25 C -0.111 4.111 26 C -0.105 4.105 27 C -0.070 4.070 28 C -0.112 4.112 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.269 0.731 36 H 0.205 0.795 37 H 0.132 0.868 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 -27.444 4.073 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.033 3.967 3 C -0.277 4.277 4 C 0.379 3.621 5 O -0.422 6.422 6 O -0.251 6.251 7 C 0.139 3.861 8 H 0.064 0.936 9 C -0.227 4.227 10 C -0.561 4.561 11 H 0.105 0.895 12 C -0.124 4.124 13 N -0.526 5.526 14 Si 0.708 3.292 15 H -0.200 1.200 16 H -0.218 1.218 17 H -0.186 1.186 18 C -0.077 4.077 19 N -0.110 5.110 20 N -0.094 5.094 21 C 0.057 3.943 22 C -0.136 4.136 23 C -0.078 4.078 24 C -0.171 4.171 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.072 4.072 28 C -0.168 4.168 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.221 0.779 37 H 0.150 0.850 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.793 -28.255 4.008 29.335 hybrid contribution -1.152 1.468 0.406 1.910 sum -7.946 -26.787 4.414 28.288 Atomic orbital electron populations 1.20807 0.85892 1.04401 1.04987 1.21558 0.94893 0.85615 0.94634 1.19300 0.93237 0.91257 1.23887 1.19833 0.84265 0.85408 0.72552 1.90731 1.18294 1.84890 1.48238 1.86557 1.38738 1.17599 1.82200 1.20907 0.97166 0.74397 0.93617 0.93583 1.22522 1.01144 1.00040 0.98974 1.20793 1.07091 0.91748 1.36423 0.89452 1.24730 0.96601 0.96337 0.94738 1.69842 1.35598 1.05395 1.41801 0.86971 0.84417 0.79078 0.78715 1.20038 1.21778 1.18644 1.24414 0.97960 0.91229 0.94126 1.77398 0.94507 1.13237 1.25836 1.45438 1.04644 1.03265 1.56010 1.17205 0.98808 0.80865 0.97465 1.21009 0.98369 0.96267 0.97910 1.19732 0.98205 0.92468 0.97441 1.20807 0.97258 1.01859 0.97178 1.21147 0.96977 0.99767 0.95026 1.20956 0.97556 0.94415 0.99379 1.19907 0.98379 0.93279 0.95602 1.20772 0.97519 1.02274 0.96261 0.89145 0.90887 0.87463 0.94396 0.92625 0.91795 0.92119 0.77868 0.85016 0.90733 0.91126 0.91263 0.85301 0.84953 0.90221 0.91409 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.42 36.01 0.34 -0.90 16 2 C 0.16 2.38 6.86 -81.46 -0.56 1.83 16 3 C -0.26 -4.55 6.13 -105.06 -0.64 -5.19 16 4 C 0.53 11.10 7.93 34.40 0.27 11.38 16 5 O -0.53 -11.68 14.23 -19.29 -0.27 -11.96 16 6 O -0.34 -7.78 9.71 -40.67 -0.39 -8.18 16 7 C 0.19 4.90 2.16 -27.88 -0.06 4.84 16 8 H 0.05 1.23 6.22 -51.93 -0.32 0.91 16 9 C -0.17 -3.90 9.03 37.16 0.34 -3.56 16 10 C -0.52 -15.03 9.48 -34.44 -0.33 -15.36 16 11 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 12 C 0.08 2.27 5.45 -17.82 -0.10 2.18 16 13 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 14 Si 0.88 21.74 24.37 -169.99 -4.14 17.60 16 15 H -0.27 -6.49 6.87 56.52 0.39 -6.11 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.26 -6.36 6.53 56.52 0.37 -6.00 16 18 C 0.11 1.72 11.87 -16.94 -0.20 1.52 16 19 N -0.29 -4.41 10.86 30.88 0.34 -4.08 16 20 N -0.32 -4.45 2.96 -6.50 -0.02 -4.47 16 21 C 0.15 1.72 5.99 -83.60 -0.50 1.22 16 22 C -0.12 -1.12 7.89 -39.40 -0.31 -1.43 16 23 C -0.08 -0.60 5.88 -104.65 -0.62 -1.21 16 24 C -0.11 -0.59 10.01 36.01 0.36 -0.23 16 25 C -0.11 -0.78 9.70 -39.55 -0.38 -1.16 16 26 C -0.10 -0.83 9.71 -39.61 -0.38 -1.21 16 27 C -0.07 -0.73 5.90 -104.44 -0.62 -1.34 16 28 C -0.11 -1.13 9.19 36.01 0.33 -0.80 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.69 5.45 -51.93 -0.28 0.40 16 31 H 0.11 1.42 6.80 -51.93 -0.35 1.07 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.29 3.27 -51.93 -0.17 1.12 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.20 2.78 8.06 -52.49 -0.42 2.36 16 37 H 0.13 1.19 7.13 -52.48 -0.37 0.82 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 40 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 41 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 45 H 0.07 0.86 6.70 -51.93 -0.35 0.51 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -33.19 370.27 -7.30 -40.49 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.10 Total: 0.52 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.06 Total: -9.43 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 1.09 Total: -34.62 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.67 Total: -20.13 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.19 -7.30 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131971025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.257 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds