Wall clock time and date at job start Tue Mar 31 2020 15:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38148 * 126.31291 * 2 1 4 4 C 1.47265 * 126.42263 * 0.02562 * 3 2 1 5 5 O 1.21528 * 120.00385 * 0.02562 * 4 3 2 6 6 O 1.34764 * 119.99820 * 179.97438 * 4 3 2 7 7 C 1.45200 * 116.99626 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47492 * 329.99408 * 7 6 4 9 9 C 1.53000 * 109.47489 * 89.99958 * 7 6 4 10 10 C 1.50705 * 109.46939 * 209.99972 * 7 6 4 11 11 H 1.08004 * 119.99967 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00304 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00043 * 180.02562 * 12 10 7 14 14 Si 1.86807 * 119.99780 * 0.02562 * 12 10 7 15 15 H 1.48491 * 109.47207 * 89.99827 * 14 12 10 16 16 H 1.48499 * 109.46730 * 209.99983 * 14 12 10 17 17 H 1.48505 * 109.46960 * 329.99393 * 14 12 10 18 18 C 1.41392 * 107.15495 * 180.27693 * 3 2 1 19 19 N 1.30457 * 108.05592 * 359.59366 * 18 3 2 20 20 N 1.34501 * 126.31646 * 180.02562 * 2 1 3 21 21 C 1.40151 * 125.75958 * 359.93480 * 20 2 1 22 22 C 1.38857 * 120.07310 * 309.30351 * 21 20 2 23 23 C 1.38096 * 119.93848 * 179.97438 * 22 21 20 24 24 C 1.50701 * 119.97146 * 180.02562 * 23 22 21 25 25 C 1.38299 * 120.06087 * 0.02562 * 23 22 21 26 26 C 1.38260 * 120.14114 * 359.97438 * 25 23 22 27 27 C 1.38133 * 120.06402 * 359.74712 * 26 25 23 28 28 C 1.50700 * 120.03729 * 180.27830 * 27 26 25 29 29 H 1.08998 * 109.47032 * 84.75459 * 1 2 3 30 30 H 1.09001 * 109.47071 * 204.75074 * 1 2 3 31 31 H 1.08994 * 109.47143 * 324.75417 * 1 2 3 32 32 H 1.08997 * 109.47001 * 300.00037 * 9 7 6 33 33 H 1.09001 * 109.47197 * 179.97438 * 9 7 6 34 34 H 1.09003 * 109.46961 * 59.99743 * 9 7 6 35 35 H 0.97002 * 119.99349 * 180.02562 * 13 12 10 36 36 H 1.07998 * 125.97093 * 179.72295 * 18 3 2 37 37 H 1.08007 * 120.03451 * 359.97438 * 22 21 20 38 38 H 1.09004 * 109.46532 * 89.99910 * 24 23 22 39 39 H 1.08991 * 109.47150 * 209.99971 * 24 23 22 40 40 H 1.09002 * 109.47026 * 330.00500 * 24 23 22 41 41 H 1.08013 * 119.92973 * 180.02562 * 25 23 22 42 42 H 1.07996 * 119.96575 * 180.02562 * 26 25 23 43 43 H 1.09001 * 109.46962 * 274.39901 * 28 27 26 44 44 H 1.09000 * 109.47134 * 34.39547 * 28 27 26 45 45 H 1.08996 * 109.47720 * 154.39815 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1132 0.0000 4 6 1.8881 2.5195 0.0005 5 8 0.7027 2.7875 0.0015 6 8 2.8026 3.5093 0.0010 7 6 2.2997 4.8714 0.0021 8 1 1.3388 4.9044 -0.5116 9 6 2.1233 5.3489 1.4449 10 6 3.2798 5.7693 -0.7080 11 1 4.1899 5.3575 -1.1186 12 6 3.0148 7.1166 -0.8335 13 7 3.8699 7.9000 -1.4536 14 14 1.4410 7.8290 -0.1226 15 1 1.6811 8.2599 1.2779 16 1 1.0160 8.9977 -0.9343 17 1 0.3747 6.7956 -0.1468 18 6 3.6607 0.6492 -0.0065 19 7 3.6357 -0.6551 -0.0014 20 7 2.3036 -1.0838 -0.0005 21 6 1.8723 -2.4172 0.0002 22 6 0.9348 -2.8448 0.9310 23 6 0.5113 -4.1593 0.9288 24 6 -0.5066 -4.6240 1.9383 25 6 1.0205 -5.0496 0.0011 26 6 1.9541 -4.6270 -0.9270 27 6 2.3772 -3.3121 -0.9335 28 6 3.3902 -2.8506 -1.9494 29 1 -0.3633 0.0939 -1.0233 30 1 -0.3633 -0.9333 0.4303 31 1 -0.3633 0.8392 0.5930 32 1 1.4145 4.6995 1.9585 33 1 1.7462 6.3716 1.4457 34 1 3.0842 5.3160 1.9585 35 1 3.6835 8.8479 -1.5415 36 1 4.5467 1.2667 -0.0124 37 1 0.5370 -2.1501 1.6561 38 1 -1.5089 -4.4910 1.5311 39 1 -0.3419 -5.6780 2.1615 40 1 -0.4052 -4.0388 2.8523 41 1 0.6875 -6.0771 0.0011 42 1 2.3495 -5.3245 -1.6504 43 1 4.3949 -3.0527 -1.5783 44 1 3.2346 -3.3852 -2.8864 45 1 3.2738 -1.7801 -2.1182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131971025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:05 Heat of formation + Delta-G solvation = -2.354969 kcal Electronic energy + Delta-G solvation = -27408.174389 eV Core-core repulsion = 23584.811977 eV Total energy + Delta-G solvation = -3823.362412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.01152 -41.06614 -40.28687 -37.58272 -35.44422 -35.20975 -34.56179 -33.12285 -32.58616 -30.57383 -30.16726 -28.72972 -27.32706 -25.96429 -25.20042 -23.99955 -23.26501 -22.43971 -21.06140 -20.57043 -19.24030 -18.62957 -17.86920 -17.45553 -17.23554 -16.80174 -16.71331 -16.34883 -15.96336 -15.37856 -15.09164 -14.93225 -14.85990 -14.63209 -14.31755 -14.21609 -14.15814 -14.04182 -13.80760 -13.66193 -13.54746 -13.44926 -13.27680 -12.90988 -12.83280 -12.61012 -12.41398 -12.27237 -12.19453 -11.98898 -11.69846 -11.62548 -11.31750 -11.19123 -11.02480 -10.81186 -10.11410 -9.76151 -9.39651 -8.42382 -6.51023 -0.27846 0.21849 0.40571 0.93353 1.06027 1.25686 1.33148 1.43135 2.00665 2.11264 2.22034 2.53558 2.90428 3.35688 3.51381 3.67309 3.72331 3.76714 3.95865 3.98931 4.15053 4.23548 4.28054 4.33515 4.42225 4.44994 4.47845 4.56398 4.59720 4.65819 4.70830 4.76075 4.78780 4.83707 4.86561 4.96027 5.05646 5.16847 5.22717 5.25122 5.30759 5.36678 5.38651 5.48700 5.66028 5.69880 6.01756 6.16442 6.30939 6.52899 6.94234 7.14257 8.73647 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.002645 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.839170 B =10583.840360 C =11280.761317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.174 3.826 3 C -0.298 4.298 4 C 0.534 3.466 5 O -0.546 6.546 6 O -0.348 6.348 7 C 0.196 3.804 8 H 0.033 0.967 9 C -0.163 4.163 10 C -0.538 4.538 11 H 0.046 0.954 12 C 0.029 3.971 13 N -0.931 5.931 14 Si 0.941 3.059 15 H -0.251 1.251 16 H -0.284 1.284 17 H -0.255 1.255 18 C 0.107 3.893 19 N -0.301 5.301 20 N -0.307 5.307 21 C 0.107 3.893 22 C -0.123 4.123 23 C -0.076 4.076 24 C -0.114 4.114 25 C -0.101 4.101 26 C -0.102 4.102 27 C -0.086 4.086 28 C -0.108 4.108 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.275 0.725 36 H 0.212 0.788 37 H 0.134 0.866 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.163 0.837 42 H 0.158 0.842 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 -30.436 5.288 32.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.043 3.957 3 C -0.310 4.310 4 C 0.381 3.619 5 O -0.439 6.439 6 O -0.264 6.264 7 C 0.141 3.859 8 H 0.051 0.949 9 C -0.220 4.220 10 C -0.576 4.576 11 H 0.065 0.935 12 C -0.170 4.170 13 N -0.569 5.569 14 Si 0.766 3.234 15 H -0.176 1.176 16 H -0.210 1.210 17 H -0.179 1.179 18 C -0.081 4.081 19 N -0.117 5.117 20 N -0.080 5.080 21 C 0.018 3.982 22 C -0.143 4.143 23 C -0.076 4.076 24 C -0.171 4.171 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.087 4.087 28 C -0.165 4.165 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.229 0.771 37 H 0.152 0.848 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.180 0.820 42 H 0.176 0.824 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.123 -31.294 5.232 33.013 hybrid contribution -0.392 2.119 -0.038 2.155 sum -9.515 -29.175 5.194 31.123 Atomic orbital electron populations 1.20875 0.83983 1.05469 1.05377 1.21886 0.95981 0.85171 0.92701 1.19163 0.94550 0.89892 1.27441 1.20284 0.83804 0.86018 0.71805 1.90701 1.18681 1.85208 1.49341 1.86542 1.39638 1.17266 1.82932 1.20632 0.95221 0.75253 0.94753 0.94904 1.22409 1.02109 1.00335 0.97182 1.20953 1.06538 0.92913 1.37164 0.93527 1.25576 1.00132 0.96493 0.94841 1.69966 1.37827 1.06073 1.43079 0.85969 0.79912 0.78417 0.79100 1.17591 1.21045 1.17938 1.24542 0.97844 0.91552 0.94161 1.77356 0.95727 1.12761 1.25870 1.45609 1.03958 1.04190 1.54287 1.17630 1.00929 0.79962 0.99636 1.21138 0.98077 0.97447 0.97627 1.20090 0.98128 0.91581 0.97830 1.20881 0.96927 1.02825 0.96419 1.21586 0.95563 1.01149 0.93611 1.21281 0.97249 0.93544 0.99928 1.20073 0.98749 0.94321 0.95606 1.20721 0.97589 1.00651 0.97511 0.88513 0.87993 0.88537 0.92336 0.92507 0.91259 0.91568 0.77138 0.84845 0.89598 0.89399 0.91272 0.81987 0.82392 0.90558 0.89279 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.32 9.42 71.24 0.67 -1.65 16 2 C 0.17 5.15 6.86 42.13 0.29 5.43 16 3 C -0.30 -10.57 6.13 -20.15 -0.12 -10.69 16 4 C 0.53 22.81 7.93 70.20 0.56 23.37 16 5 O -0.55 -24.43 14.23 19.75 0.28 -24.15 16 6 O -0.35 -16.73 9.71 -56.75 -0.55 -17.28 16 7 C 0.20 10.13 2.16 29.85 0.06 10.19 16 8 H 0.03 1.79 6.22 -2.39 -0.01 1.77 16 9 C -0.16 -7.36 9.03 71.98 0.65 -6.71 16 10 C -0.54 -32.13 9.48 25.60 0.24 -31.89 16 11 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 12 C 0.03 1.71 5.45 84.65 0.46 2.17 16 13 N -0.93 -57.64 13.96 21.45 0.30 -57.34 16 14 Si 0.94 44.56 24.37 68.60 1.67 46.23 16 15 H -0.25 -10.94 6.87 99.48 0.68 -10.25 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.26 -11.76 6.53 99.48 0.65 -11.11 16 18 C 0.11 3.47 11.87 85.67 1.02 4.49 16 19 N -0.30 -9.26 10.86 -56.20 -0.61 -9.87 16 20 N -0.31 -8.56 2.96 -174.47 -0.52 -9.07 16 21 C 0.11 2.41 5.99 38.10 0.23 2.64 16 22 C -0.12 -2.14 7.89 22.38 0.18 -1.96 16 23 C -0.08 -0.91 5.88 -19.88 -0.12 -1.03 16 24 C -0.11 -0.75 10.01 71.24 0.71 -0.03 16 25 C -0.10 -1.00 9.70 22.29 0.22 -0.79 16 26 C -0.10 -1.28 9.71 22.25 0.22 -1.06 16 27 C -0.09 -1.65 5.90 -19.75 -0.12 -1.77 16 28 C -0.11 -2.14 9.19 71.24 0.65 -1.48 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.10 1.74 5.45 -2.39 -0.01 1.73 16 31 H 0.10 2.52 6.80 -2.39 -0.02 2.50 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.06 2.53 3.27 -2.39 -0.01 2.52 16 34 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.21 6.18 8.06 -2.91 -0.02 6.15 16 37 H 0.13 2.18 7.13 -2.91 -0.02 2.16 16 38 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.09 0.30 8.08 -2.39 -0.02 0.28 16 40 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 41 H 0.16 0.56 8.06 -2.90 -0.02 0.54 16 42 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.09 1.30 8.11 -2.39 -0.02 1.28 16 45 H 0.04 1.03 6.70 -2.39 -0.02 1.01 16 Total: -1.00 -74.41 370.27 7.30 -67.10 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.93 Total: 15.15 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 5.80 Total: -10.77 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -0.83 Total: -76.29 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.27 Total: -41.43 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.67 Total: 46.23 kcal Total: -74.41 7.30 -67.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131971025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.747 kcal (2) G-P(sol) polarization free energy of solvation -74.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds