Wall clock time and date at job start Tue Mar 31 2020 15:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30171 * 126.79866 * 2 1 4 4 O 1.20928 * 111.60226 * 180.24933 * 3 2 1 5 5 C 1.34037 * 111.56742 * 359.74227 * 4 3 2 6 6 C 1.50691 * 126.77737 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44549 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.00694 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46817 * 89.99728 * 8 7 5 10 10 O 1.21274 * 120.00042 * 359.72211 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46908 * 35.00463 * 12 11 9 14 14 C 1.52995 * 109.47468 * 155.00186 * 12 11 9 15 15 C 1.50701 * 109.47201 * 295.00347 * 14 12 11 16 16 H 1.08001 * 120.00205 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00219 * 179.97438 * 15 14 12 18 18 N 1.31517 * 120.00046 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00303 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47250 * 59.99624 * 19 17 15 21 21 H 1.48499 * 109.47393 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46852 * 299.99918 * 19 17 15 23 23 C 1.50702 * 109.47313 * 275.00710 * 12 11 9 24 24 C 1.38238 * 119.99509 * 319.72027 * 23 12 11 25 25 C 1.38241 * 119.99246 * 179.79001 * 24 23 12 26 26 C 1.38234 * 120.00257 * 0.44528 * 25 24 23 27 27 C 1.38237 * 120.00080 * 359.80650 * 26 25 24 28 28 C 1.38230 * 119.99861 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47166 * 270.17229 * 1 2 3 30 30 H 1.08999 * 109.47139 * 30.16834 * 1 2 3 31 31 H 1.09001 * 109.47155 * 150.17031 * 1 2 3 32 32 H 1.09005 * 109.47517 * 270.00129 * 6 5 4 33 33 H 1.09003 * 109.47359 * 29.99989 * 6 5 4 34 34 H 1.08998 * 109.47185 * 150.00358 * 6 5 4 35 35 H 1.09000 * 109.47247 * 329.99791 * 8 7 5 36 36 H 1.09001 * 109.47358 * 209.99218 * 8 7 5 37 37 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.47048 * 55.00372 * 14 12 11 39 39 H 1.08994 * 109.47690 * 175.00192 * 14 12 11 40 40 H 0.96996 * 120.00418 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.00248 * 0.02562 * 24 23 12 42 42 H 1.07999 * 119.99526 * 180.27250 * 25 24 23 43 43 H 1.08000 * 119.99858 * 179.83648 * 26 25 24 44 44 H 1.07995 * 119.99737 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.00014 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6025 -0.6067 -0.0033 6 6 4.9021 -1.3694 -0.0086 7 6 2.3540 -1.1320 0.0029 8 6 1.9591 -2.5863 0.0065 9 6 1.8338 -3.0693 1.4285 10 8 2.0493 -2.3089 2.3484 11 7 1.4872 -4.3476 1.6780 12 6 1.3659 -4.8173 3.0603 13 1 0.9767 -4.0129 3.6845 14 6 0.4098 -6.0106 3.1115 15 6 -0.9746 -5.5622 2.7198 16 1 -1.1545 -4.5295 2.4599 17 6 -2.0115 -6.4706 2.6922 18 7 -1.7924 -7.7283 3.0082 19 14 -3.7273 -5.9150 2.2061 20 1 -3.6971 -5.3632 0.8278 21 1 -4.6554 -7.0732 2.2559 22 1 -4.1938 -4.8667 3.1488 23 6 2.7210 -5.2371 3.5690 24 6 3.5860 -5.9284 2.7415 25 6 4.8307 -6.3097 3.2068 26 6 5.2067 -6.0077 4.5023 27 6 4.3395 -5.3209 5.3313 28 6 3.0967 -4.9357 4.8647 29 1 -0.3633 0.0031 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5112 32 1 5.2103 -1.5552 -1.0375 33 1 5.6686 -0.7848 0.5003 34 1 4.7677 -2.3200 0.5076 35 1 2.7205 -3.1708 -0.5100 36 1 1.0027 -2.7045 -0.5029 37 1 1.3188 -4.9569 0.9422 38 1 0.7519 -6.7802 2.4194 39 1 0.3879 -6.4156 4.1232 40 1 -2.5218 -8.3675 2.9884 41 1 3.2910 -6.1673 1.7305 42 1 5.5083 -6.8459 2.5589 43 1 6.1781 -6.3079 4.8665 44 1 4.6334 -5.0846 6.3433 45 1 2.4190 -4.3995 5.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153527925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:04 Heat of formation + Delta-G solvation = 29.876378 kcal Electronic energy + Delta-G solvation = -27899.952296 eV Core-core repulsion = 24077.987540 eV Total energy + Delta-G solvation = -3821.964756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.82382 -39.69207 -38.48422 -35.56584 -34.88558 -33.60042 -32.78112 -31.39780 -30.52097 -29.69595 -28.74656 -28.55112 -27.08237 -24.90095 -22.39030 -22.20948 -21.93229 -20.46498 -19.94346 -19.68923 -17.67363 -17.06027 -16.83154 -16.43613 -16.19189 -15.49482 -15.14455 -14.73465 -14.57805 -14.31930 -13.96918 -13.63010 -13.45138 -13.31282 -13.08604 -13.01684 -12.93802 -12.80787 -12.57782 -12.53392 -12.25561 -12.14167 -11.85505 -11.57986 -11.17452 -10.96078 -10.89727 -10.76133 -10.66514 -10.49364 -9.85250 -9.81287 -9.48817 -9.34942 -9.00216 -8.58673 -8.49758 -8.45567 -8.21780 -6.12867 -4.16696 1.52350 1.74362 1.76490 2.26280 3.05974 3.15593 3.24908 3.30978 3.33210 3.76892 4.20502 4.24870 4.36076 4.48859 4.78001 4.90735 5.18693 5.22880 5.23581 5.23818 5.26729 5.29286 5.35173 5.36529 5.47754 5.51379 5.57422 5.67093 5.74805 5.79535 5.86935 5.90589 5.96238 6.13461 6.22429 6.32193 6.40376 6.54466 6.80685 6.82063 6.87018 7.07386 7.36753 7.44975 7.58358 7.83347 8.08026 8.21795 8.36409 8.72449 8.88864 9.48509 10.97575 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008072 B = 0.004840 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.832479 B = 5783.634248 C = 8626.106640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.036 3.964 3 N -0.372 5.372 4 O 0.092 5.908 5 C -0.022 4.022 6 C -0.072 4.072 7 C -0.175 4.175 8 C -0.066 4.066 9 C 0.511 3.489 10 O -0.541 6.541 11 N -0.700 5.700 12 C 0.185 3.815 13 H 0.086 0.914 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.070 4.070 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.401 0.599 38 H 0.025 0.975 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.752 6.615 -6.632 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 N -0.080 5.080 4 O 0.029 5.971 5 C -0.086 4.086 6 C -0.130 4.130 7 C -0.179 4.179 8 C -0.106 4.106 9 C 0.296 3.704 10 O -0.418 6.418 11 N -0.350 5.350 12 C 0.081 3.919 13 H 0.104 0.896 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.072 4.072 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.140 4.140 28 C -0.127 4.127 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.236 0.764 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.590 8.300 -5.940 16.208 hybrid contribution -1.234 -0.985 -0.481 1.651 sum 11.356 7.315 -6.422 14.957 Atomic orbital electron populations 1.20181 0.86082 1.03409 1.03799 1.23353 0.98817 0.88413 1.01740 1.73783 0.89243 1.23907 1.21036 1.84754 1.21704 1.22419 1.68217 1.24116 0.98053 0.83806 1.02613 1.20312 0.90175 0.98892 1.03584 1.20250 0.91758 0.96123 1.09798 1.19936 1.04372 0.90208 0.96116 1.20318 0.77165 0.82396 0.90529 1.90685 1.49955 1.54950 1.46245 1.45960 1.68736 1.10806 1.09462 1.20230 0.90725 0.99439 0.81526 0.89637 1.19383 0.92481 0.90792 0.98646 1.21081 0.93028 0.95342 1.46496 0.92468 1.24980 0.98974 0.94868 0.95230 1.69944 1.32518 1.02383 1.48172 0.86666 0.84160 0.78130 0.79105 1.20232 1.21298 1.20223 1.20552 0.96553 0.96035 0.94023 1.20900 0.93717 0.98325 0.99748 1.21039 0.96625 1.00694 0.95962 1.20996 0.99450 1.00406 0.94457 1.21044 0.94385 0.99211 0.99393 1.21024 0.96222 0.99764 0.95666 0.89859 0.90739 0.90024 0.89574 0.89881 0.89133 0.87923 0.87543 0.76442 0.95715 0.94826 0.92779 0.86542 0.86733 0.86853 0.86643 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.39 36.01 0.37 -0.58 16 2 C 0.04 0.53 7.33 -82.10 -0.60 -0.07 16 3 N -0.37 -5.92 12.07 33.42 0.40 -5.52 16 4 O 0.09 1.35 11.20 17.18 0.19 1.55 16 5 C -0.02 -0.29 7.49 -35.31 -0.26 -0.55 16 6 C -0.07 -0.64 10.24 36.00 0.37 -0.27 16 7 C -0.18 -2.42 4.81 -104.42 -0.50 -2.93 16 8 C -0.07 -0.80 5.95 -29.03 -0.17 -0.97 16 9 C 0.51 8.32 7.78 -10.98 -0.09 8.24 16 10 O -0.54 -10.99 15.70 5.56 0.09 -10.90 16 11 N -0.70 -11.59 4.04 -54.93 -0.22 -11.82 16 12 C 0.18 3.60 2.11 -69.09 -0.15 3.45 16 13 H 0.09 1.86 7.44 -51.93 -0.39 1.48 16 14 C 0.02 0.56 4.49 -27.89 -0.13 0.44 16 15 C -0.52 -13.33 8.84 -34.44 -0.30 -13.63 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.00 13.29 55.43 0.74 -24.27 16 19 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.07 -1.25 4.91 -104.62 -0.51 -1.76 16 24 C -0.11 -1.71 9.32 -39.58 -0.37 -2.07 16 25 C -0.13 -1.74 10.05 -39.58 -0.40 -2.13 16 26 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 27 C -0.12 -1.79 10.05 -39.58 -0.40 -2.18 16 28 C -0.11 -1.84 9.67 -39.58 -0.38 -2.22 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.88 7.65 -51.93 -0.40 0.48 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 35 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.11 1.13 7.65 -51.93 -0.40 0.74 16 37 H 0.40 5.93 8.60 -40.82 -0.35 5.57 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.12 1.67 7.73 -52.49 -0.41 1.26 16 42 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -32.61 388.42 -8.53 -41.14 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.54 Total: 6.43 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -4.02 Total: -17.95 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.92 Total: -41.60 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.28 Total: -9.35 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.61 -8.53 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153527925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.014 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds