Wall clock time and date at job start Tue Mar 31 2020 15:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30171 * 126.79866 * 2 1 4 4 O 1.20928 * 111.60226 * 180.24933 * 3 2 1 5 5 C 1.34037 * 111.56742 * 359.74227 * 4 3 2 6 6 C 1.50691 * 126.77737 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44549 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.00694 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.46817 * 89.99728 * 8 7 5 10 10 O 1.21274 * 120.00042 * 359.72211 * 9 8 7 11 11 N 1.34777 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00266 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46908 * 35.00463 * 12 11 9 14 14 C 1.52995 * 109.47468 * 155.00186 * 12 11 9 15 15 C 1.50701 * 109.47201 * 295.00347 * 14 12 11 16 16 H 1.08001 * 120.00205 * 0.02562 * 15 14 12 17 17 C 1.37876 * 120.00219 * 179.97438 * 15 14 12 18 18 N 1.31517 * 120.00046 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00303 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47250 * 59.99624 * 19 17 15 21 21 H 1.48499 * 109.47393 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46852 * 299.99918 * 19 17 15 23 23 C 1.50702 * 109.47313 * 275.00710 * 12 11 9 24 24 C 1.38238 * 119.99509 * 319.72027 * 23 12 11 25 25 C 1.38241 * 119.99246 * 179.79001 * 24 23 12 26 26 C 1.38234 * 120.00257 * 0.44528 * 25 24 23 27 27 C 1.38237 * 120.00080 * 359.80650 * 26 25 24 28 28 C 1.38230 * 119.99861 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47166 * 270.17229 * 1 2 3 30 30 H 1.08999 * 109.47139 * 30.16834 * 1 2 3 31 31 H 1.09001 * 109.47155 * 150.17031 * 1 2 3 32 32 H 1.09005 * 109.47517 * 270.00129 * 6 5 4 33 33 H 1.09003 * 109.47359 * 29.99989 * 6 5 4 34 34 H 1.08998 * 109.47185 * 150.00358 * 6 5 4 35 35 H 1.09000 * 109.47247 * 329.99791 * 8 7 5 36 36 H 1.09001 * 109.47358 * 209.99218 * 8 7 5 37 37 H 0.96999 * 120.00043 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.47048 * 55.00372 * 14 12 11 39 39 H 1.08994 * 109.47690 * 175.00192 * 14 12 11 40 40 H 0.96996 * 120.00418 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.00248 * 0.02562 * 24 23 12 42 42 H 1.07999 * 119.99526 * 180.27250 * 25 24 23 43 43 H 1.08000 * 119.99858 * 179.83648 * 26 25 24 44 44 H 1.07995 * 119.99737 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.00014 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6025 -0.6067 -0.0033 6 6 4.9021 -1.3694 -0.0086 7 6 2.3540 -1.1320 0.0029 8 6 1.9591 -2.5863 0.0065 9 6 1.8338 -3.0693 1.4285 10 8 2.0493 -2.3089 2.3484 11 7 1.4872 -4.3476 1.6780 12 6 1.3659 -4.8173 3.0603 13 1 0.9767 -4.0129 3.6845 14 6 0.4098 -6.0106 3.1115 15 6 -0.9746 -5.5622 2.7198 16 1 -1.1545 -4.5295 2.4599 17 6 -2.0115 -6.4706 2.6922 18 7 -1.7924 -7.7283 3.0082 19 14 -3.7273 -5.9150 2.2061 20 1 -3.6971 -5.3632 0.8278 21 1 -4.6554 -7.0732 2.2559 22 1 -4.1938 -4.8667 3.1488 23 6 2.7210 -5.2371 3.5690 24 6 3.5860 -5.9284 2.7415 25 6 4.8307 -6.3097 3.2068 26 6 5.2067 -6.0077 4.5023 27 6 4.3395 -5.3209 5.3313 28 6 3.0967 -4.9357 4.8647 29 1 -0.3633 0.0031 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5112 32 1 5.2103 -1.5552 -1.0375 33 1 5.6686 -0.7848 0.5003 34 1 4.7677 -2.3200 0.5076 35 1 2.7205 -3.1708 -0.5100 36 1 1.0027 -2.7045 -0.5029 37 1 1.3188 -4.9569 0.9422 38 1 0.7519 -6.7802 2.4194 39 1 0.3879 -6.4156 4.1232 40 1 -2.5218 -8.3675 2.9884 41 1 3.2910 -6.1673 1.7305 42 1 5.5083 -6.8459 2.5589 43 1 6.1781 -6.3079 4.8665 44 1 4.6334 -5.0846 6.3433 45 1 2.4190 -4.3995 5.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153527925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:03 Heat of formation + Delta-G solvation = 11.621544 kcal Electronic energy + Delta-G solvation = -27900.743885 eV Core-core repulsion = 24077.987540 eV Total energy + Delta-G solvation = -3822.756345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.89418 -41.03096 -39.71287 -36.91623 -36.12692 -34.69381 -34.57868 -32.73539 -31.68400 -30.78251 -30.30581 -29.59495 -28.05542 -26.58149 -23.80164 -23.55252 -23.14105 -21.68992 -21.15790 -20.92102 -18.81265 -18.63339 -18.00351 -17.79578 -17.62021 -16.89860 -16.39644 -16.35362 -15.85777 -15.45871 -15.12320 -14.72609 -14.62767 -14.38937 -14.31354 -14.16295 -14.06391 -13.96577 -13.83373 -13.64060 -13.45774 -13.38364 -13.12871 -12.95081 -12.82123 -12.63176 -12.42504 -12.12334 -11.90428 -11.84497 -11.56419 -11.31840 -11.04091 -10.73402 -10.54834 -10.04688 -9.92690 -9.72484 -9.48640 -8.18216 -6.28241 0.50210 0.55079 0.58887 1.17628 1.41585 1.43890 1.50974 1.78853 2.20646 2.41542 2.49762 3.01192 3.16515 3.22892 3.54948 3.80480 3.91107 4.02239 4.06626 4.16864 4.24436 4.35222 4.36323 4.49121 4.49819 4.59348 4.63329 4.68983 4.70358 4.74799 4.80276 4.81974 4.84578 4.90079 5.13109 5.15642 5.23143 5.27272 5.32620 5.46115 5.64153 5.64756 5.67475 5.80141 5.94779 6.18586 6.23195 6.77515 6.84491 7.31504 7.40349 7.44026 8.92196 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008072 B = 0.004840 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.832479 B = 5783.634248 C = 8626.106640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.020 3.980 3 N -0.402 5.402 4 O 0.081 5.919 5 C -0.017 4.017 6 C -0.072 4.072 7 C -0.196 4.196 8 C -0.054 4.054 9 C 0.512 3.488 10 O -0.586 6.586 11 N -0.695 5.695 12 C 0.202 3.798 13 H 0.051 0.949 14 C 0.038 3.962 15 C -0.528 4.528 16 H 0.055 0.945 17 C 0.013 3.987 18 N -0.926 5.926 19 Si 0.953 3.047 20 H -0.261 1.261 21 H -0.286 1.286 22 H -0.279 1.279 23 C -0.096 4.096 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.130 4.130 27 C -0.126 4.126 28 C -0.137 4.137 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.411 0.589 38 H 0.016 0.984 39 H -0.001 1.001 40 H 0.263 0.737 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.510 6.017 -8.389 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 N -0.111 5.111 4 O 0.020 5.980 5 C -0.081 4.081 6 C -0.129 4.129 7 C -0.201 4.201 8 C -0.094 4.094 9 C 0.299 3.701 10 O -0.466 6.466 11 N -0.345 5.345 12 C 0.097 3.903 13 H 0.069 0.931 14 C 0.000 4.000 15 C -0.566 4.566 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.566 5.566 19 Si 0.778 3.222 20 H -0.186 1.186 21 H -0.211 1.211 22 H -0.204 1.204 23 C -0.098 4.098 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.144 4.144 28 C -0.155 4.155 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.247 0.753 38 H 0.034 0.966 39 H 0.017 0.983 40 H 0.072 0.928 41 H 0.145 0.855 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.361 7.701 -7.726 18.034 hybrid contribution -1.690 -0.809 0.138 1.879 sum 12.671 6.892 -7.588 16.298 Atomic orbital electron populations 1.20260 0.84983 1.04925 1.03333 1.23837 0.99892 0.88806 1.01271 1.73763 0.89841 1.24888 1.22640 1.84711 1.21349 1.23512 1.68423 1.24881 0.99510 0.83206 1.00467 1.20533 0.88360 0.98200 1.05779 1.20500 0.92026 0.96618 1.10913 1.19969 1.06741 0.89592 0.93112 1.21019 0.75679 0.81403 0.91972 1.90670 1.51852 1.55905 1.48157 1.45829 1.68720 1.11465 1.08440 1.19645 0.91289 0.96513 0.82864 0.93074 1.19128 0.92772 0.91945 0.96107 1.21363 0.94253 0.95129 1.45837 0.92717 1.25747 1.02719 0.94875 0.95277 1.70060 1.33617 1.03462 1.49460 0.85686 0.79587 0.77535 0.79348 1.18571 1.21142 1.20434 1.20440 0.96168 0.98204 0.94941 1.21094 0.94323 0.98112 1.00042 1.21455 0.96091 0.99764 0.96611 1.21459 1.00466 0.98745 0.94084 1.21349 0.93413 0.98807 1.00803 1.21146 0.97635 1.01072 0.95672 0.91177 0.89544 0.88270 0.86313 0.88881 0.89178 0.84078 0.85624 0.75256 0.96590 0.98305 0.92787 0.85456 0.83275 0.83265 0.84361 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.39 71.24 0.74 -1.15 16 2 C 0.02 0.60 7.33 43.58 0.32 0.92 16 3 N -0.40 -12.82 12.07 -49.56 -0.60 -13.42 16 4 O 0.08 2.35 11.20 71.65 0.80 3.16 16 5 C -0.02 -0.41 7.49 25.04 0.19 -0.23 16 6 C -0.07 -1.07 10.24 71.23 0.73 -0.34 16 7 C -0.20 -5.18 4.81 -19.74 -0.10 -5.27 16 8 C -0.05 -1.20 5.95 29.10 0.17 -1.03 16 9 C 0.51 16.44 7.78 87.66 0.68 17.12 16 10 O -0.59 -24.30 15.70 -3.01 -0.05 -24.35 16 11 N -0.69 -22.97 4.04 -446.11 -1.80 -24.78 16 12 C 0.20 8.21 2.11 44.24 0.09 8.30 16 13 H 0.05 2.40 7.44 -2.39 -0.02 2.38 16 14 C 0.04 1.83 4.49 29.85 0.13 1.97 16 15 C -0.53 -27.62 8.84 25.60 0.23 -27.40 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 17 C 0.01 0.68 5.46 84.65 0.46 1.14 16 18 N -0.93 -52.87 13.29 21.45 0.28 -52.59 16 19 Si 0.95 42.13 29.54 68.60 2.03 44.15 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.10 -3.49 4.91 -19.86 -0.10 -3.59 16 24 C -0.12 -3.54 9.32 22.27 0.21 -3.34 16 25 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 26 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 27 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 28 C -0.14 -4.79 9.67 22.27 0.22 -4.57 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.10 2.00 7.65 -2.39 -0.02 1.98 16 32 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.40 8.06 -2.39 -0.02 1.39 16 35 H 0.14 2.03 8.08 -2.39 -0.02 2.01 16 36 H 0.13 2.33 7.65 -2.39 -0.02 2.31 16 37 H 0.41 11.79 8.60 -92.71 -0.80 11.00 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.13 3.44 7.73 -2.91 -0.02 3.41 16 42 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 43 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 45 H 0.11 3.81 8.04 -2.91 -0.02 3.78 16 Total: -1.00 -73.96 388.42 5.52 -68.44 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.20 Total: 25.81 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 4.65 Total: -26.43 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -2.12 Total: -90.78 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.75 Total: -21.19 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -73.96 5.52 -68.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153527925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.063 kcal (2) G-P(sol) polarization free energy of solvation -73.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds