Wall clock time and date at job start Tue Mar 31 2020 15:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30174 * 126.80320 * 2 1 4 4 O 1.20923 * 111.60855 * 180.25109 * 3 2 1 5 5 C 1.34040 * 111.56207 * 359.74019 * 4 3 2 6 6 C 1.50701 * 126.77704 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.45051 * 0.02562 * 5 4 3 8 8 C 1.50701 * 128.00729 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46713 * 90.00440 * 8 7 5 10 10 O 1.21280 * 120.00208 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99469 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99717 * 175.03884 * 11 9 8 13 13 H 1.09001 * 109.47081 * 38.67413 * 12 11 9 14 14 C 1.53001 * 109.47016 * 278.67071 * 12 11 9 15 15 C 1.50701 * 109.46726 * 174.20469 * 14 12 11 16 16 H 1.08000 * 120.00052 * 354.86058 * 15 14 12 17 17 C 1.37877 * 119.99782 * 174.58567 * 15 14 12 18 18 N 1.31518 * 119.99836 * 0.27267 * 17 15 14 19 19 Si 1.86795 * 120.00105 * 180.27528 * 17 15 14 20 20 H 1.48496 * 109.47258 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47439 * 119.99670 * 19 17 15 22 22 H 1.48497 * 109.47215 * 239.99676 * 19 17 15 23 23 C 1.50700 * 109.46855 * 158.67031 * 12 11 9 24 24 C 1.38227 * 119.99988 * 39.72685 * 23 12 11 25 25 C 1.38237 * 119.99683 * 179.78655 * 24 23 12 26 26 C 1.38236 * 120.00247 * 0.44407 * 25 24 23 27 27 C 1.38236 * 119.99844 * 359.80810 * 26 25 24 28 28 C 1.38233 * 119.99580 * 220.00096 * 23 12 11 29 29 H 1.09003 * 109.47447 * 270.16780 * 1 2 3 30 30 H 1.08996 * 109.47529 * 30.17173 * 1 2 3 31 31 H 1.09006 * 109.46955 * 150.16916 * 1 2 3 32 32 H 1.09004 * 109.47260 * 270.00245 * 6 5 4 33 33 H 1.09005 * 109.47082 * 29.99481 * 6 5 4 34 34 H 1.08997 * 109.47309 * 149.99983 * 6 5 4 35 35 H 1.08996 * 109.46759 * 330.00177 * 8 7 5 36 36 H 1.08998 * 109.46576 * 210.00203 * 8 7 5 37 37 H 0.96995 * 120.00341 * 355.03350 * 11 9 8 38 38 H 1.09001 * 109.47044 * 54.20777 * 14 12 11 39 39 H 1.08997 * 109.47226 * 294.20257 * 14 12 11 40 40 H 0.97005 * 119.99678 * 180.02562 * 18 17 15 41 41 H 1.07998 * 120.00026 * 359.97438 * 24 23 12 42 42 H 1.08007 * 120.00262 * 180.27408 * 25 24 23 43 43 H 1.08000 * 119.99817 * 179.83930 * 26 25 24 44 44 H 1.08000 * 119.99887 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00544 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6024 -0.6068 -0.0033 6 6 4.9021 -1.3696 -0.0075 7 6 2.3539 -1.1321 0.0029 8 6 1.9590 -2.5864 0.0065 9 6 1.8336 -3.0693 1.4286 10 8 2.0446 -2.3076 2.3485 11 7 1.4880 -4.3479 1.6780 12 6 1.4718 -4.8469 3.0554 13 1 1.0855 -4.0723 3.7179 14 6 2.8939 -5.2187 3.4799 15 6 2.9000 -5.5965 4.9388 16 1 1.9998 -5.4945 5.5268 17 6 4.0532 -6.0778 5.5214 18 7 5.1493 -6.2020 4.8054 19 14 4.0587 -6.5534 7.3278 20 1 2.7102 -6.3215 7.9049 21 1 4.4130 -7.9894 7.4606 22 1 5.0570 -5.7280 8.0540 23 6 0.5882 -6.0649 3.1379 24 6 0.6045 -7.0007 2.1208 25 6 -0.2028 -8.1202 2.1986 26 6 -1.0331 -8.2992 3.2893 27 6 -1.0532 -7.3606 4.3040 28 6 -0.2427 -6.2433 4.2282 29 1 -0.3634 0.0030 1.0277 30 1 -0.3634 0.8884 -0.5165 31 1 -0.3633 -0.8915 -0.5112 32 1 5.2111 -1.5552 -1.0362 33 1 5.6682 -0.7850 0.5020 34 1 4.7672 -2.3201 0.5085 35 1 2.7205 -3.1708 -0.5099 36 1 1.0027 -2.7044 -0.5030 37 1 1.2500 -4.9377 0.9457 38 1 3.5546 -4.3661 3.3226 39 1 3.2419 -6.0628 2.8845 40 1 5.9605 -6.5410 5.2152 41 1 1.2501 -6.8589 1.2667 42 1 -0.1869 -8.8537 1.4060 43 1 -1.6656 -9.1725 3.3488 44 1 -1.7021 -7.5002 5.1559 45 1 -0.2584 -5.5101 5.0210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153528031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:07 Heat of formation + Delta-G solvation = 34.064599 kcal Electronic energy + Delta-G solvation = -27700.568590 eV Core-core repulsion = 23878.785449 eV Total energy + Delta-G solvation = -3821.783141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.80177 -39.70744 -38.56087 -35.52423 -34.83596 -33.56178 -32.86266 -31.34201 -30.49273 -29.69306 -28.66382 -28.50393 -27.06977 -24.80372 -22.44267 -22.31000 -21.92399 -20.47762 -19.94441 -19.53535 -17.71622 -17.24059 -16.79372 -16.53322 -15.93731 -15.28120 -15.10608 -14.71002 -14.54264 -14.26719 -13.93977 -13.58328 -13.47520 -13.36743 -13.04070 -13.00270 -12.93263 -12.85402 -12.56142 -12.49605 -12.20430 -12.18393 -11.92102 -11.54446 -11.16194 -10.90233 -10.87516 -10.72684 -10.66305 -10.05490 -9.97030 -9.86503 -9.54486 -9.17921 -8.95110 -8.55769 -8.50682 -8.37054 -8.06490 -6.02563 -4.03344 1.55520 1.78754 1.82270 2.25479 3.02893 3.19365 3.30642 3.38208 3.41608 3.68579 4.21948 4.25284 4.46163 4.50432 4.75419 4.91512 5.16463 5.22677 5.24693 5.25681 5.34258 5.35197 5.36457 5.41464 5.47111 5.48544 5.49181 5.65944 5.74206 5.82156 5.88317 5.96041 6.00442 6.15948 6.21149 6.35578 6.47984 6.69495 6.79206 6.83726 6.87628 7.12895 7.40094 7.59062 7.65532 7.94547 7.98467 8.33539 8.37620 8.66675 9.00608 9.59827 11.09221 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.003797 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.439299 B = 7371.817585 C = 9077.107248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.033 3.967 3 N -0.372 5.372 4 O 0.093 5.907 5 C -0.013 4.013 6 C -0.077 4.077 7 C -0.182 4.182 8 C -0.063 4.063 9 C 0.510 3.490 10 O -0.526 6.526 11 N -0.725 5.725 12 C 0.181 3.819 13 H 0.085 0.915 14 C 0.026 3.974 15 C -0.510 4.510 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.047 4.047 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.135 4.135 27 C -0.121 4.121 28 C -0.098 4.098 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.391 0.609 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.259 0.741 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 2.473 -13.366 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 N -0.080 5.080 4 O 0.030 5.970 5 C -0.076 4.076 6 C -0.134 4.134 7 C -0.186 4.186 8 C -0.104 4.104 9 C 0.295 3.705 10 O -0.401 6.401 11 N -0.376 5.376 12 C 0.079 3.921 13 H 0.103 0.897 14 C -0.012 4.012 15 C -0.549 4.549 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.047 4.047 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.153 4.153 27 C -0.139 4.139 28 C -0.117 4.117 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.226 0.774 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.954 4.306 -12.666 16.098 hybrid contribution 0.060 -1.583 0.821 1.784 sum -8.894 2.722 -11.846 15.061 Atomic orbital electron populations 1.20142 0.86277 1.03208 1.03565 1.23306 0.98692 0.88504 1.02135 1.73777 0.89297 1.23933 1.20949 1.84762 1.21609 1.22517 1.68117 1.24207 0.98208 0.83655 1.01577 1.20384 0.90111 0.99243 1.03648 1.20206 0.91849 0.95981 1.10587 1.19920 1.04079 0.90512 0.95870 1.20290 0.77407 0.82104 0.90673 1.90746 1.48613 1.54606 1.46140 1.46272 1.69719 1.11605 1.10005 1.20316 0.98625 0.92199 0.80994 0.89739 1.19413 0.88003 0.97060 0.96731 1.21082 0.96557 1.42696 0.94593 0.92411 1.24928 0.95604 0.95697 0.97831 1.69965 1.00995 1.46502 1.35895 0.86575 0.78145 0.78059 0.85519 1.19669 1.21078 1.21017 1.19892 0.94408 0.96277 0.94148 1.20826 0.99292 0.94631 0.99076 1.20978 0.97146 0.97482 0.98320 1.20985 1.00190 0.99173 0.94957 1.21047 0.99594 0.94714 0.98507 1.20980 0.95134 0.98074 0.97473 0.90015 0.90738 0.90314 0.89503 0.89630 0.88674 0.87669 0.87989 0.77448 0.95829 0.95871 0.93102 0.86678 0.86708 0.86872 0.86631 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.39 36.00 0.37 -0.43 16 2 C 0.03 0.47 7.33 -82.10 -0.60 -0.13 16 3 N -0.37 -5.92 12.07 33.42 0.40 -5.52 16 4 O 0.09 1.42 11.20 17.18 0.19 1.61 16 5 C -0.01 -0.18 7.49 -35.30 -0.26 -0.44 16 6 C -0.08 -0.81 10.24 36.01 0.37 -0.44 16 7 C -0.18 -2.52 4.81 -104.42 -0.50 -3.02 16 8 C -0.06 -0.74 5.95 -29.03 -0.17 -0.91 16 9 C 0.51 8.35 7.68 -10.98 -0.08 8.26 16 10 O -0.53 -11.27 15.73 5.56 0.09 -11.18 16 11 N -0.72 -11.39 5.05 -54.93 -0.28 -11.66 16 12 C 0.18 3.59 2.19 -69.08 -0.15 3.44 16 13 H 0.08 1.85 7.49 -51.93 -0.39 1.46 16 14 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 15 C -0.51 -13.96 8.53 -34.44 -0.29 -14.26 16 16 H 0.06 1.54 6.79 -52.49 -0.36 1.18 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 C -0.05 -0.83 4.50 -104.63 -0.47 -1.30 16 24 C -0.12 -1.86 9.02 -39.59 -0.36 -2.22 16 25 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 26 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 27 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 28 C -0.10 -1.70 8.83 -39.58 -0.35 -2.05 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.67 7.65 -51.93 -0.40 0.27 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 35 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.10 0.88 7.65 -51.93 -0.40 0.48 16 37 H 0.39 4.78 6.87 -40.82 -0.28 4.50 16 38 H 0.02 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.12 1.57 6.95 -52.49 -0.36 1.20 16 42 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.12 2.09 7.84 -52.49 -0.41 1.67 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -35.04 384.09 -8.39 -43.43 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.37 Total: 4.50 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -3.93 Total: -17.96 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.86 Total: -42.84 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.28 Total: -9.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.04 -8.39 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153528031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.492 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds