Wall clock time and date at job start Tue Mar 31 2020 15:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30174 * 126.80320 * 2 1 4 4 O 1.20923 * 111.60855 * 180.25109 * 3 2 1 5 5 C 1.34040 * 111.56207 * 359.74019 * 4 3 2 6 6 C 1.50701 * 126.77704 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.45051 * 0.02562 * 5 4 3 8 8 C 1.50701 * 128.00729 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46713 * 90.00440 * 8 7 5 10 10 O 1.21280 * 120.00208 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99469 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99717 * 175.03884 * 11 9 8 13 13 H 1.09001 * 109.47081 * 38.67413 * 12 11 9 14 14 C 1.53001 * 109.47016 * 278.67071 * 12 11 9 15 15 C 1.50701 * 109.46726 * 174.20469 * 14 12 11 16 16 H 1.08000 * 120.00052 * 354.86058 * 15 14 12 17 17 C 1.37877 * 119.99782 * 174.58567 * 15 14 12 18 18 N 1.31518 * 119.99836 * 0.27267 * 17 15 14 19 19 Si 1.86795 * 120.00105 * 180.27528 * 17 15 14 20 20 H 1.48496 * 109.47258 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47439 * 119.99670 * 19 17 15 22 22 H 1.48497 * 109.47215 * 239.99676 * 19 17 15 23 23 C 1.50700 * 109.46855 * 158.67031 * 12 11 9 24 24 C 1.38227 * 119.99988 * 39.72685 * 23 12 11 25 25 C 1.38237 * 119.99683 * 179.78655 * 24 23 12 26 26 C 1.38236 * 120.00247 * 0.44407 * 25 24 23 27 27 C 1.38236 * 119.99844 * 359.80810 * 26 25 24 28 28 C 1.38233 * 119.99580 * 220.00096 * 23 12 11 29 29 H 1.09003 * 109.47447 * 270.16780 * 1 2 3 30 30 H 1.08996 * 109.47529 * 30.17173 * 1 2 3 31 31 H 1.09006 * 109.46955 * 150.16916 * 1 2 3 32 32 H 1.09004 * 109.47260 * 270.00245 * 6 5 4 33 33 H 1.09005 * 109.47082 * 29.99481 * 6 5 4 34 34 H 1.08997 * 109.47309 * 149.99983 * 6 5 4 35 35 H 1.08996 * 109.46759 * 330.00177 * 8 7 5 36 36 H 1.08998 * 109.46576 * 210.00203 * 8 7 5 37 37 H 0.96995 * 120.00341 * 355.03350 * 11 9 8 38 38 H 1.09001 * 109.47044 * 54.20777 * 14 12 11 39 39 H 1.08997 * 109.47226 * 294.20257 * 14 12 11 40 40 H 0.97005 * 119.99678 * 180.02562 * 18 17 15 41 41 H 1.07998 * 120.00026 * 359.97438 * 24 23 12 42 42 H 1.08007 * 120.00262 * 180.27408 * 25 24 23 43 43 H 1.08000 * 119.99817 * 179.83930 * 26 25 24 44 44 H 1.08000 * 119.99887 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00544 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6024 -0.6068 -0.0033 6 6 4.9021 -1.3696 -0.0075 7 6 2.3539 -1.1321 0.0029 8 6 1.9590 -2.5864 0.0065 9 6 1.8336 -3.0693 1.4286 10 8 2.0446 -2.3076 2.3485 11 7 1.4880 -4.3479 1.6780 12 6 1.4718 -4.8469 3.0554 13 1 1.0855 -4.0723 3.7179 14 6 2.8939 -5.2187 3.4799 15 6 2.9000 -5.5965 4.9388 16 1 1.9998 -5.4945 5.5268 17 6 4.0532 -6.0778 5.5214 18 7 5.1493 -6.2020 4.8054 19 14 4.0587 -6.5534 7.3278 20 1 2.7102 -6.3215 7.9049 21 1 4.4130 -7.9894 7.4606 22 1 5.0570 -5.7280 8.0540 23 6 0.5882 -6.0649 3.1379 24 6 0.6045 -7.0007 2.1208 25 6 -0.2028 -8.1202 2.1986 26 6 -1.0331 -8.2992 3.2893 27 6 -1.0532 -7.3606 4.3040 28 6 -0.2427 -6.2433 4.2282 29 1 -0.3634 0.0030 1.0277 30 1 -0.3634 0.8884 -0.5165 31 1 -0.3633 -0.8915 -0.5112 32 1 5.2111 -1.5552 -1.0362 33 1 5.6682 -0.7850 0.5020 34 1 4.7672 -2.3201 0.5085 35 1 2.7205 -3.1708 -0.5099 36 1 1.0027 -2.7044 -0.5030 37 1 1.2500 -4.9377 0.9457 38 1 3.5546 -4.3661 3.3226 39 1 3.2419 -6.0628 2.8845 40 1 5.9605 -6.5410 5.2152 41 1 1.2501 -6.8589 1.2667 42 1 -0.1869 -8.8537 1.4060 43 1 -1.6656 -9.1725 3.3488 44 1 -1.7021 -7.5002 5.1559 45 1 -0.2584 -5.5101 5.0210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153528031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:06 Heat of formation + Delta-G solvation = 12.539984 kcal Electronic energy + Delta-G solvation = -27701.501967 eV Core-core repulsion = 23878.785449 eV Total energy + Delta-G solvation = -3822.716519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.88724 -41.07403 -39.81313 -36.83939 -36.11660 -34.85179 -34.58375 -32.78777 -31.66213 -30.74392 -30.25266 -29.58002 -28.11762 -26.52820 -24.01292 -23.64447 -23.08392 -21.67475 -21.10386 -20.93736 -18.89268 -18.68089 -18.22582 -17.90249 -17.26020 -16.69971 -16.62509 -16.17064 -15.90642 -15.45768 -15.11034 -14.78946 -14.73009 -14.47324 -14.31202 -14.19470 -14.11821 -13.96365 -13.86515 -13.79850 -13.42174 -13.16859 -13.11667 -13.01141 -12.88276 -12.61913 -12.53347 -11.96017 -11.91156 -11.84582 -11.61314 -11.35944 -11.03411 -10.73296 -10.56056 -10.08565 -9.95917 -9.67754 -9.42003 -8.19725 -6.26914 0.47842 0.58614 0.63590 1.17498 1.36062 1.37613 1.49127 1.73721 2.17175 2.34914 2.48792 3.03458 3.15643 3.23824 3.53805 3.75643 3.88215 3.93455 4.07704 4.12937 4.27473 4.34885 4.37928 4.49025 4.52955 4.58376 4.64857 4.65467 4.75269 4.75886 4.82276 4.86264 4.87392 4.89066 5.12284 5.17678 5.25291 5.27338 5.34514 5.50091 5.58551 5.68769 5.72217 5.76636 5.93561 6.22929 6.25761 6.69129 6.85083 7.29260 7.39087 7.41231 8.92631 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.003797 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.439299 B = 7371.817585 C = 9077.107248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.025 3.975 3 N -0.403 5.403 4 O 0.076 5.924 5 C -0.020 4.020 6 C -0.075 4.075 7 C -0.199 4.199 8 C -0.051 4.051 9 C 0.507 3.493 10 O -0.584 6.584 11 N -0.711 5.711 12 C 0.199 3.801 13 H 0.053 0.947 14 C 0.041 3.959 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.951 3.049 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.283 1.283 23 C -0.072 4.072 24 C -0.126 4.126 25 C -0.118 4.118 26 C -0.130 4.130 27 C -0.125 4.125 28 C -0.124 4.124 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.412 0.588 38 H -0.019 1.019 39 H 0.007 0.993 40 H 0.262 0.738 41 H 0.132 0.868 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.796 0.011 -14.785 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.134 4.134 3 N -0.113 5.113 4 O 0.016 5.984 5 C -0.083 4.083 6 C -0.132 4.132 7 C -0.203 4.203 8 C -0.091 4.091 9 C 0.295 3.705 10 O -0.464 6.464 11 N -0.364 5.364 12 C 0.095 3.905 13 H 0.071 0.929 14 C 0.003 3.997 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.570 5.570 19 Si 0.777 3.223 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.209 1.209 23 C -0.072 4.072 24 C -0.145 4.145 25 C -0.136 4.136 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.143 4.143 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.140 0.860 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.250 0.750 38 H -0.001 1.001 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.166 0.834 44 H 0.155 0.845 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.657 1.818 -14.125 17.787 hybrid contribution 0.562 -0.840 1.255 1.611 sum -10.095 0.979 -12.871 16.386 Atomic orbital electron populations 1.20298 0.84133 1.05283 1.03528 1.23938 1.00245 0.88372 1.00810 1.73756 0.89749 1.25091 1.22714 1.84718 1.21616 1.23355 1.68686 1.24830 0.99583 0.83359 1.00528 1.20509 0.88901 0.98064 1.05740 1.20550 0.91832 0.96964 1.10960 1.19997 1.07249 0.89297 0.92509 1.21196 0.75607 0.81472 0.92248 1.90725 1.51074 1.56095 1.48491 1.46058 1.69245 1.12006 1.09082 1.19666 0.95746 0.92561 0.82564 0.92915 1.19151 0.90541 0.94371 0.95668 1.21454 0.96557 1.42079 0.95997 0.92397 1.25768 0.95306 0.95836 1.02181 1.70080 1.01598 1.47565 1.37753 0.85593 0.78405 0.77986 0.80333 1.18760 1.20106 1.20885 1.19761 0.95373 0.96276 0.95823 1.21071 0.99858 0.94682 0.98858 1.21411 0.95841 0.97160 0.99179 1.21448 0.99802 0.99534 0.93969 1.21341 0.99184 0.93969 0.99812 1.21060 0.96671 0.99211 0.97332 0.90920 0.89537 0.87457 0.85974 0.89298 0.89951 0.84617 0.83951 0.75013 1.00111 0.97510 0.92957 0.85069 0.83217 0.83389 0.84458 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.39 71.23 0.74 -0.81 16 2 C 0.03 0.72 7.33 43.58 0.32 1.04 16 3 N -0.40 -13.09 12.07 -49.55 -0.60 -13.69 16 4 O 0.08 2.39 11.20 71.63 0.80 3.19 16 5 C -0.02 -0.54 7.49 25.04 0.19 -0.35 16 6 C -0.08 -1.56 10.24 71.24 0.73 -0.83 16 7 C -0.20 -5.38 4.81 -19.73 -0.10 -5.48 16 8 C -0.05 -1.08 5.95 29.10 0.17 -0.91 16 9 C 0.51 16.69 7.68 87.66 0.67 17.36 16 10 O -0.58 -26.32 15.73 -3.03 -0.05 -26.37 16 11 N -0.71 -22.35 5.05 -446.08 -2.25 -24.60 16 12 C 0.20 8.19 2.19 44.25 0.10 8.29 16 13 H 0.05 2.48 7.49 -2.39 -0.02 2.46 16 14 C 0.04 2.12 4.68 29.85 0.14 2.26 16 15 C -0.52 -29.57 8.53 25.60 0.22 -29.35 16 16 H 0.06 3.20 6.79 -2.91 -0.02 3.18 16 17 C 0.01 0.40 5.46 84.65 0.46 0.86 16 18 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 19 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 20 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 23 C -0.07 -2.56 4.50 -19.87 -0.09 -2.65 16 24 C -0.13 -3.68 9.02 22.27 0.20 -3.48 16 25 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 26 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 27 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 28 C -0.12 -4.32 8.83 22.27 0.20 -4.13 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.11 1.54 7.65 -2.38 -0.02 1.52 16 32 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.77 8.14 -2.38 -0.02 1.76 16 34 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 35 H 0.14 2.10 8.08 -2.39 -0.02 2.08 16 36 H 0.14 1.90 7.65 -2.39 -0.02 1.88 16 37 H 0.41 9.37 6.87 -92.71 -0.64 8.73 16 38 H -0.02 -1.16 8.08 -2.39 -0.02 -1.18 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 41 H 0.13 3.26 6.95 -2.91 -0.02 3.24 16 42 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.11 3.84 7.84 -2.91 -0.02 3.81 16 Total: -1.00 -81.40 384.09 5.21 -76.19 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.37 Total: 21.16 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.63 Total: -26.97 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -2.56 Total: -94.22 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.75 Total: -23.18 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -81.40 5.21 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153528031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.727 kcal (2) G-P(sol) polarization free energy of solvation -81.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds