Wall clock time and date at job start Tue Mar 31 2020 15:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38285 * 119.96569 * 2 1 4 4 C 1.38285 * 120.13735 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.95991 * 180.02562 * 4 3 2 6 6 C 1.38109 * 120.07325 * 359.97438 * 4 3 2 7 7 C 1.38872 * 119.92878 * 0.02562 * 6 4 3 8 8 N 1.39937 * 120.06656 * 179.97438 * 7 6 4 9 9 C 1.34774 * 120.00600 * 35.09274 * 8 7 6 10 10 O 1.21592 * 119.99571 * 355.31314 * 9 8 7 11 11 N 1.34770 * 120.00451 * 175.31384 * 9 8 7 12 12 C 1.46505 * 120.00116 * 180.27649 * 11 9 8 13 13 C 1.50699 * 109.46863 * 269.72334 * 12 11 9 14 14 H 1.08003 * 120.00188 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99927 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00042 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46905 * 90.00016 * 17 15 13 19 19 H 1.48502 * 109.47027 * 209.99984 * 17 15 13 20 20 H 1.48495 * 109.46956 * 330.00254 * 17 15 13 21 21 C 1.46504 * 120.00060 * 359.97438 * 11 9 8 22 22 C 1.50704 * 109.46707 * 90.00296 * 21 11 9 23 23 C 1.34504 * 125.79140 * 90.00449 * 22 21 11 24 24 C 1.41379 * 106.84321 * 179.97438 * 23 22 21 25 25 C 1.34518 * 106.84025 * 359.97438 * 24 23 22 26 26 O 1.34303 * 108.41774 * 359.74033 * 25 24 23 27 27 C 1.38110 * 119.96411 * 180.24365 * 2 1 3 28 28 H 1.09009 * 109.46721 * 90.00102 * 1 2 3 29 29 H 1.08994 * 109.47756 * 210.00646 * 1 2 3 30 30 H 1.09005 * 109.47234 * 330.00825 * 1 2 3 31 31 H 1.08002 * 119.93015 * 359.97236 * 3 2 1 32 32 H 1.09003 * 109.47342 * 269.97866 * 5 4 3 33 33 H 1.09004 * 109.47430 * 29.97958 * 5 4 3 34 34 H 1.09003 * 109.46645 * 149.97819 * 5 4 3 35 35 H 1.08000 * 120.03425 * 179.97438 * 6 4 3 36 36 H 0.97010 * 119.99684 * 215.08832 * 8 7 6 37 37 H 1.08997 * 109.47215 * 29.72355 * 12 11 9 38 38 H 1.09006 * 109.47189 * 149.72526 * 12 11 9 39 39 H 0.97002 * 119.99802 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47167 * 210.00279 * 21 11 9 41 41 H 1.09002 * 109.47141 * 330.00572 * 21 11 9 42 42 H 1.08007 * 126.57967 * 359.95603 * 23 22 21 43 43 H 1.08002 * 126.58317 * 179.97438 * 24 23 22 44 44 H 1.07998 * 125.78684 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.03854 * 0.03474 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5805 1.2021 0.0005 5 6 4.3292 2.5100 0.0011 6 6 4.2762 0.0090 0.0016 7 6 3.5855 -1.1957 0.0016 8 7 4.2874 -2.4063 0.0021 9 6 5.4514 -2.5102 0.6736 10 8 5.9347 -1.5305 1.2075 11 7 6.0796 -3.6998 0.7532 12 6 7.3418 -3.8140 1.4883 13 6 8.4938 -3.5596 0.5506 14 1 8.3047 -3.3349 -0.4887 15 6 9.7892 -3.6126 1.0199 16 7 10.0194 -3.8857 2.2856 17 14 11.2172 -3.2966 -0.1421 18 1 11.5412 -1.8474 -0.1455 19 1 12.4031 -4.0679 0.3097 20 1 10.8425 -3.7233 -1.5142 21 6 5.4970 -4.8804 0.1104 22 6 6.0110 -4.9881 -1.3022 23 6 7.1170 -5.6488 -1.6887 24 6 7.2202 -5.4905 -3.0898 25 6 6.1707 -4.7428 -3.4758 26 8 5.4384 -4.4465 -2.3897 27 6 2.1968 -1.1965 -0.0051 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8898 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.6560 2.1323 -0.0005 32 1 4.5104 2.8254 -1.0264 33 1 3.7370 3.2675 0.5146 34 1 5.2817 2.3831 0.5157 35 1 5.3562 0.0130 0.0016 36 1 3.9362 -3.1708 -0.4808 37 1 7.3605 -3.0804 2.2942 38 1 7.4289 -4.8165 1.9073 39 1 10.9307 -3.9227 2.6158 40 1 5.7778 -5.7737 0.6683 41 1 4.4111 -4.7874 0.0958 42 1 7.7961 -6.1953 -1.0509 43 1 7.9933 -5.8926 -3.7278 44 1 5.9515 -4.4370 -4.4882 45 1 1.6568 -2.1318 -0.0096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156051687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:13 Heat of formation + Delta-G solvation = 16.962058 kcal Electronic energy + Delta-G solvation = -28136.496950 eV Core-core repulsion = 24313.972187 eV Total energy + Delta-G solvation = -3822.524763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16004 -40.27065 -38.69690 -35.48285 -34.59528 -33.36202 -32.67628 -32.54468 -30.19326 -30.04113 -27.43662 -26.96353 -26.56039 -25.35820 -23.34244 -21.39867 -21.35623 -20.82338 -20.35134 -19.18646 -17.81580 -17.11129 -16.69298 -16.22462 -15.96208 -15.46638 -15.30769 -14.92973 -14.65408 -14.17135 -13.95757 -13.78744 -13.36803 -13.16315 -13.14070 -12.76088 -12.72573 -12.49433 -12.44229 -12.30578 -12.22642 -11.94447 -11.62220 -11.54399 -11.35128 -11.19835 -10.94755 -10.92507 -10.62381 -10.20595 -9.85636 -9.70200 -9.42902 -9.25634 -8.43229 -8.34985 -8.18779 -7.93720 -7.62579 -6.03576 -4.06108 1.53221 1.61101 2.05782 2.98737 3.26211 3.30254 3.31796 3.37956 3.42114 3.73452 4.06927 4.35460 4.50626 4.87746 4.94503 4.98861 5.14789 5.26986 5.31480 5.36027 5.43973 5.44723 5.53016 5.54369 5.59215 5.71041 5.73933 5.77432 5.84153 5.93953 6.12843 6.19693 6.23380 6.40643 6.45435 6.52939 6.61262 6.79456 6.81679 6.91644 6.92916 7.29729 7.38262 7.41120 7.52719 7.65641 7.94649 8.22902 8.47387 8.94808 9.18076 9.58495 11.04721 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.004095 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.200307 B = 6836.151137 C = 8017.470839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 C -0.148 4.148 4 C -0.066 4.066 5 C -0.113 4.113 6 C -0.125 4.125 7 C 0.186 3.814 8 N -0.694 5.694 9 C 0.702 3.298 10 O -0.561 6.561 11 N -0.603 5.603 12 C 0.259 3.741 13 C -0.516 4.516 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.196 3.804 22 C -0.036 4.036 23 C -0.165 4.165 24 C -0.213 4.213 25 C -0.051 4.051 26 O -0.182 6.182 27 C -0.162 4.162 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.402 0.598 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.151 0.849 43 H 0.142 0.858 44 H 0.195 0.805 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.457 1.383 -8.116 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.070 4.070 3 C -0.167 4.167 4 C -0.067 4.067 5 C -0.170 4.170 6 C -0.146 4.146 7 C 0.090 3.910 8 N -0.343 5.343 9 C 0.404 3.596 10 O -0.436 6.436 11 N -0.338 5.338 12 C 0.140 3.860 13 C -0.555 4.555 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.071 3.929 22 C -0.087 4.087 23 C -0.185 4.185 24 C -0.232 4.232 25 C -0.119 4.119 26 O -0.078 6.078 27 C -0.183 4.183 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.161 0.839 36 H 0.238 0.762 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.212 0.788 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.111 2.157 -7.494 17.899 hybrid contribution 1.170 -0.442 -1.115 1.676 sum -14.941 1.715 -8.609 17.329 Atomic orbital electron populations 1.20736 0.91359 1.02500 1.01997 1.19538 0.95528 0.92529 0.99449 1.20765 0.93446 0.97176 1.05316 1.19776 0.93489 0.95069 0.98341 1.20777 1.00315 0.93784 1.02090 1.21314 1.01717 0.90204 1.01347 1.17514 0.90196 0.85471 0.97782 1.42956 1.23930 1.12951 1.54501 1.15912 0.79671 0.84430 0.79545 1.90898 1.66029 1.35475 1.51245 1.47719 1.26174 1.05213 1.54677 1.19340 0.76873 0.98031 0.91726 1.21417 0.90459 1.47621 0.96041 0.92303 1.24874 0.98678 0.95287 0.95066 1.69925 1.20791 1.49300 1.13546 0.86580 0.81868 0.78373 0.81161 1.20691 1.21252 1.19876 1.19764 0.96672 0.91775 0.84643 1.22985 0.97124 1.00099 0.88465 1.21598 0.98081 1.04067 0.94802 1.21821 1.00769 1.04631 0.96015 1.23827 0.94243 1.03049 0.90786 1.83932 1.47474 1.61222 1.15176 1.20652 0.92012 0.98048 1.07603 0.91436 0.91757 0.91718 0.86567 0.91382 0.91798 0.91150 0.83895 0.76161 0.93426 0.94649 0.92808 0.86928 0.90783 0.83152 0.84041 0.78835 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.07 -0.87 5.88 -104.65 -0.62 -1.48 16 3 C -0.15 -1.91 9.35 -39.55 -0.37 -2.28 16 4 C -0.07 -0.98 5.88 -104.65 -0.62 -1.59 16 5 C -0.11 -1.39 10.01 36.00 0.36 -1.03 16 6 C -0.13 -2.23 8.35 -39.39 -0.33 -2.56 16 7 C 0.19 3.12 6.30 -83.69 -0.53 2.60 16 8 N -0.69 -11.93 5.17 -14.22 -0.07 -12.01 16 9 C 0.70 15.06 8.12 -86.93 -0.71 14.35 16 10 O -0.56 -14.29 13.35 5.29 0.07 -14.22 16 11 N -0.60 -12.49 2.44 -182.18 -0.44 -12.93 16 12 C 0.26 6.51 5.21 -5.19 -0.03 6.48 16 13 C -0.52 -14.18 9.16 -34.44 -0.32 -14.49 16 14 H 0.06 1.68 7.66 -52.48 -0.40 1.27 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.20 3.11 5.71 -5.19 -0.03 3.08 16 22 C -0.04 -0.60 6.90 -35.63 -0.25 -0.85 16 23 C -0.17 -2.90 10.43 -39.71 -0.41 -3.31 16 24 C -0.21 -3.32 10.91 -39.70 -0.43 -3.75 16 25 C -0.05 -0.73 12.09 29.42 0.36 -0.38 16 26 O -0.18 -2.92 10.65 5.70 0.06 -2.86 16 27 C -0.16 -2.22 9.62 -39.39 -0.38 -2.60 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.14 2.97 6.22 -52.49 -0.33 2.65 16 36 H 0.40 5.83 6.62 -40.82 -0.27 5.56 16 37 H 0.05 1.36 7.42 -51.93 -0.39 0.98 16 38 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.11 1.59 7.89 -51.93 -0.41 1.18 16 41 H 0.07 0.93 6.44 -51.93 -0.33 0.59 16 42 H 0.15 2.69 8.06 -52.48 -0.42 2.27 16 43 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 44 H 0.19 1.97 8.06 -52.49 -0.42 1.55 16 45 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -33.51 382.49 -9.25 -42.76 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.31 Total: 8.73 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -4.03 Total: -6.78 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.22 Total: -50.30 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.13 Total: -17.08 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.51 -9.25 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156051687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.721 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds