Wall clock time and date at job start Tue Mar 31 2020 15:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38285 * 119.96569 * 2 1 4 4 C 1.38285 * 120.13735 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.95991 * 180.02562 * 4 3 2 6 6 C 1.38109 * 120.07325 * 359.97438 * 4 3 2 7 7 C 1.38872 * 119.92878 * 0.02562 * 6 4 3 8 8 N 1.39937 * 120.06656 * 179.97438 * 7 6 4 9 9 C 1.34774 * 120.00600 * 35.09274 * 8 7 6 10 10 O 1.21592 * 119.99571 * 355.31314 * 9 8 7 11 11 N 1.34770 * 120.00451 * 175.31384 * 9 8 7 12 12 C 1.46505 * 120.00116 * 180.27649 * 11 9 8 13 13 C 1.50699 * 109.46863 * 269.72334 * 12 11 9 14 14 H 1.08003 * 120.00188 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99927 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99673 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00042 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46905 * 90.00016 * 17 15 13 19 19 H 1.48502 * 109.47027 * 209.99984 * 17 15 13 20 20 H 1.48495 * 109.46956 * 330.00254 * 17 15 13 21 21 C 1.46504 * 120.00060 * 359.97438 * 11 9 8 22 22 C 1.50704 * 109.46707 * 90.00296 * 21 11 9 23 23 C 1.34504 * 125.79140 * 90.00449 * 22 21 11 24 24 C 1.41379 * 106.84321 * 179.97438 * 23 22 21 25 25 C 1.34518 * 106.84025 * 359.97438 * 24 23 22 26 26 O 1.34303 * 108.41774 * 359.74033 * 25 24 23 27 27 C 1.38110 * 119.96411 * 180.24365 * 2 1 3 28 28 H 1.09009 * 109.46721 * 90.00102 * 1 2 3 29 29 H 1.08994 * 109.47756 * 210.00646 * 1 2 3 30 30 H 1.09005 * 109.47234 * 330.00825 * 1 2 3 31 31 H 1.08002 * 119.93015 * 359.97236 * 3 2 1 32 32 H 1.09003 * 109.47342 * 269.97866 * 5 4 3 33 33 H 1.09004 * 109.47430 * 29.97958 * 5 4 3 34 34 H 1.09003 * 109.46645 * 149.97819 * 5 4 3 35 35 H 1.08000 * 120.03425 * 179.97438 * 6 4 3 36 36 H 0.97010 * 119.99684 * 215.08832 * 8 7 6 37 37 H 1.08997 * 109.47215 * 29.72355 * 12 11 9 38 38 H 1.09006 * 109.47189 * 149.72526 * 12 11 9 39 39 H 0.97002 * 119.99802 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47167 * 210.00279 * 21 11 9 41 41 H 1.09002 * 109.47141 * 330.00572 * 21 11 9 42 42 H 1.08007 * 126.57967 * 359.95603 * 23 22 21 43 43 H 1.08002 * 126.58317 * 179.97438 * 24 23 22 44 44 H 1.07998 * 125.78684 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.03854 * 0.03474 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5805 1.2021 0.0005 5 6 4.3292 2.5100 0.0011 6 6 4.2762 0.0090 0.0016 7 6 3.5855 -1.1957 0.0016 8 7 4.2874 -2.4063 0.0021 9 6 5.4514 -2.5102 0.6736 10 8 5.9347 -1.5305 1.2075 11 7 6.0796 -3.6998 0.7532 12 6 7.3418 -3.8140 1.4883 13 6 8.4938 -3.5596 0.5506 14 1 8.3047 -3.3349 -0.4887 15 6 9.7892 -3.6126 1.0199 16 7 10.0194 -3.8857 2.2856 17 14 11.2172 -3.2966 -0.1421 18 1 11.5412 -1.8474 -0.1455 19 1 12.4031 -4.0679 0.3097 20 1 10.8425 -3.7233 -1.5142 21 6 5.4970 -4.8804 0.1104 22 6 6.0110 -4.9881 -1.3022 23 6 7.1170 -5.6488 -1.6887 24 6 7.2202 -5.4905 -3.0898 25 6 6.1707 -4.7428 -3.4758 26 8 5.4384 -4.4465 -2.3897 27 6 2.1968 -1.1965 -0.0051 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8898 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.6560 2.1323 -0.0005 32 1 4.5104 2.8254 -1.0264 33 1 3.7370 3.2675 0.5146 34 1 5.2817 2.3831 0.5157 35 1 5.3562 0.0130 0.0016 36 1 3.9362 -3.1708 -0.4808 37 1 7.3605 -3.0804 2.2942 38 1 7.4289 -4.8165 1.9073 39 1 10.9307 -3.9227 2.6158 40 1 5.7778 -5.7737 0.6683 41 1 4.4111 -4.7874 0.0958 42 1 7.7961 -6.1953 -1.0509 43 1 7.9933 -5.8926 -3.7278 44 1 5.9515 -4.4370 -4.4882 45 1 1.6568 -2.1318 -0.0096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156051687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:12 Heat of formation + Delta-G solvation = -1.954757 kcal Electronic energy + Delta-G solvation = -28137.317245 eV Core-core repulsion = 24313.972187 eV Total energy + Delta-G solvation = -3823.345058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.40551 -41.71155 -39.99275 -37.09391 -36.10553 -34.73505 -34.35449 -33.81055 -31.52715 -31.42292 -29.15518 -28.02814 -27.58591 -26.76658 -25.21979 -22.83546 -22.60187 -21.98765 -21.61203 -20.61063 -19.28444 -18.76535 -18.29916 -17.69286 -17.17104 -16.78603 -16.65844 -16.62609 -16.17289 -15.68678 -15.40067 -14.85741 -14.71877 -14.38067 -14.32119 -14.13346 -13.96899 -13.85546 -13.69924 -13.53630 -13.32019 -13.30608 -12.98995 -12.92425 -12.81258 -12.64474 -12.59713 -12.37446 -12.20002 -11.98103 -11.76255 -11.21797 -10.88420 -10.73203 -10.61486 -9.79435 -9.44873 -9.31038 -8.95570 -8.19894 -6.29784 0.39221 0.47445 0.79623 1.33006 1.35634 1.44826 1.63391 1.89406 1.99678 2.28009 2.39027 2.85680 2.97953 3.11535 3.76611 3.91884 3.95186 4.02487 4.21882 4.27094 4.36538 4.40936 4.45189 4.47228 4.55094 4.70592 4.77960 4.82510 4.94709 4.95552 4.97812 4.98368 5.11935 5.12866 5.19813 5.26812 5.32846 5.43908 5.50705 5.54919 5.67110 5.71473 5.75553 5.78021 6.00097 6.09297 6.20025 6.27824 6.76611 6.93896 7.34562 7.56739 8.87324 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.004095 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.200307 B = 6836.151137 C = 8017.470839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.075 4.075 5 C -0.112 4.112 6 C -0.160 4.160 7 C 0.158 3.842 8 N -0.676 5.676 9 C 0.697 3.303 10 O -0.612 6.612 11 N -0.606 5.606 12 C 0.276 3.724 13 C -0.518 4.518 14 H 0.045 0.955 15 C 0.015 3.985 16 N -0.926 5.926 17 Si 0.951 3.049 18 H -0.286 1.286 19 H -0.274 1.274 20 H -0.267 1.267 21 C 0.192 3.808 22 C -0.048 4.048 23 C -0.187 4.187 24 C -0.233 4.233 25 C -0.039 4.039 26 O -0.186 6.186 27 C -0.158 4.158 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.098 0.902 36 H 0.415 0.585 37 H 0.003 0.997 38 H 0.037 0.963 39 H 0.265 0.735 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.160 0.840 44 H 0.238 0.762 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.376 1.666 -10.186 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.065 4.065 3 C -0.162 4.162 4 C -0.076 4.076 5 C -0.168 4.168 6 C -0.181 4.181 7 C 0.063 3.937 8 N -0.326 5.326 9 C 0.399 3.601 10 O -0.492 6.492 11 N -0.340 5.340 12 C 0.156 3.844 13 C -0.557 4.557 14 H 0.064 0.936 15 C -0.184 4.184 16 N -0.566 5.566 17 Si 0.777 3.223 18 H -0.212 1.212 19 H -0.199 1.199 20 H -0.191 1.191 21 C 0.069 3.931 22 C -0.099 4.099 23 C -0.208 4.208 24 C -0.252 4.252 25 C -0.106 4.106 26 O -0.083 6.083 27 C -0.178 4.178 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.117 0.883 36 H 0.254 0.746 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.130 0.870 42 H 0.155 0.845 43 H 0.177 0.823 44 H 0.254 0.746 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.087 2.406 -9.604 21.502 hybrid contribution 1.975 -0.474 -0.518 2.097 sum -17.111 1.932 -10.123 19.975 Atomic orbital electron populations 1.20819 0.88133 1.03890 1.03478 1.20065 0.97737 0.91692 0.97020 1.21159 0.92472 0.98977 1.03617 1.20049 0.94795 0.94736 0.98022 1.20812 0.99509 0.93510 1.02990 1.21150 0.99885 0.92434 1.04653 1.17803 0.91534 0.84608 0.99756 1.42622 1.22452 1.13852 1.53645 1.16116 0.80577 0.83833 0.79525 1.90867 1.67636 1.37271 1.53398 1.47515 1.24988 1.06711 1.54746 1.18805 0.78591 0.96381 0.90668 1.21525 0.91475 1.47164 0.95543 0.93647 1.25621 1.01133 0.95175 0.96494 1.70021 1.21436 1.50197 1.14984 0.85654 0.79217 0.77841 0.79581 1.21220 1.19906 1.19117 1.20092 0.98555 0.90311 0.84147 1.22973 0.97389 1.00572 0.88992 1.21734 0.98300 1.04643 0.96084 1.22112 1.02124 1.05669 0.95341 1.24674 0.93004 1.01147 0.91768 1.83934 1.47766 1.61128 1.15451 1.20947 0.90445 1.00004 1.06438 0.89713 0.90636 0.90189 0.83329 0.90078 0.89180 0.93349 0.88346 0.74573 0.97904 0.94508 0.92589 0.85452 0.87029 0.84490 0.82269 0.74592 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.23 0.71 -0.67 16 2 C -0.06 -1.39 5.88 -19.88 -0.12 -1.51 16 3 C -0.14 -3.32 9.35 22.29 0.21 -3.11 16 4 C -0.08 -2.22 5.88 -19.88 -0.12 -2.34 16 5 C -0.11 -2.74 10.01 71.24 0.71 -2.02 16 6 C -0.16 -6.01 8.35 22.39 0.19 -5.82 16 7 C 0.16 5.33 6.30 38.15 0.24 5.57 16 8 N -0.68 -23.51 5.17 -317.18 -1.64 -25.16 16 9 C 0.70 31.35 8.12 179.06 1.45 32.80 16 10 O -0.61 -33.62 13.35 -4.00 -0.05 -33.68 16 11 N -0.61 -26.04 2.44 -848.55 -2.07 -28.11 16 12 C 0.28 14.65 5.21 85.63 0.45 15.10 16 13 C -0.52 -29.59 9.16 25.60 0.23 -29.36 16 14 H 0.05 2.68 7.66 -2.91 -0.02 2.65 16 15 C 0.01 0.84 5.46 84.66 0.46 1.30 16 16 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 17 Si 0.95 45.89 29.54 68.60 2.03 47.92 16 18 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 C 0.19 6.04 5.71 85.63 0.49 6.53 16 22 C -0.05 -1.62 6.90 24.83 0.17 -1.45 16 23 C -0.19 -6.58 10.43 22.19 0.23 -6.35 16 24 C -0.23 -6.99 10.91 22.19 0.24 -6.75 16 25 C -0.04 -1.02 12.09 66.97 0.81 -0.21 16 26 O -0.19 -5.72 10.65 -2.51 -0.03 -5.75 16 27 C -0.16 -3.98 9.62 22.39 0.22 -3.77 16 28 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 30 H 0.08 0.84 8.09 -2.38 -0.02 0.82 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 34 H 0.05 1.37 8.08 -2.39 -0.02 1.35 16 35 H 0.10 4.53 6.22 -2.91 -0.02 4.52 16 36 H 0.42 11.65 6.62 -92.70 -0.61 11.04 16 37 H 0.00 0.18 7.42 -2.39 -0.02 0.16 16 38 H 0.04 1.92 7.89 -2.38 -0.02 1.90 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.13 3.58 7.89 -2.39 -0.02 3.56 16 41 H 0.11 2.62 6.44 -2.39 -0.02 2.61 16 42 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 43 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 44 H 0.24 3.90 8.06 -2.91 -0.02 3.88 16 45 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -78.32 382.49 5.50 -72.83 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.39 Total: 29.29 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 6.58 Total: -2.05 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -3.43 Total: -108.55 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.08 Total: -39.43 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -78.32 5.50 -72.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156051687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.872 kcal (2) G-P(sol) polarization free energy of solvation -78.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds