Wall clock time and date at job start Tue Mar 31 2020 15:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38113 * 120.03348 * 2 1 4 4 C 1.38285 * 120.06908 * 179.70335 * 3 2 1 5 5 C 1.38282 * 120.13628 * 0.29928 * 4 3 2 6 6 C 1.38115 * 120.07081 * 359.95442 * 5 4 3 7 7 C 1.50695 * 120.03159 * 180.02562 * 6 5 4 8 8 C 1.38862 * 119.93093 * 0.02562 * 6 5 4 9 9 N 1.39943 * 120.06991 * 180.02562 * 8 6 5 10 10 C 1.34778 * 120.00058 * 235.16420 * 9 8 6 11 11 O 1.21589 * 119.99838 * 2.07106 * 10 9 8 12 12 N 1.34776 * 120.00216 * 182.07496 * 10 9 8 13 13 C 1.46493 * 120.00158 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47465 * 89.99771 * 13 12 10 15 15 H 1.07996 * 119.99523 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00107 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00106 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46635 * 90.00536 * 18 16 14 20 20 H 1.48502 * 109.46863 * 209.99974 * 18 16 14 21 21 H 1.48491 * 109.47580 * 330.00260 * 18 16 14 22 22 C 1.46498 * 119.99730 * 359.97438 * 12 10 9 23 23 C 1.50701 * 109.47117 * 90.00143 * 22 12 10 24 24 C 1.34516 * 125.78666 * 89.99897 * 23 22 12 25 25 C 1.41388 * 106.83975 * 180.02562 * 24 23 22 26 26 C 1.34515 * 106.83706 * 359.97438 * 25 24 23 27 27 O 1.34296 * 108.42352 * 359.73850 * 26 25 24 28 28 H 1.09004 * 109.47021 * 89.02302 * 1 2 3 29 29 H 1.09001 * 109.47422 * 209.02446 * 1 2 3 30 30 H 1.08998 * 109.47005 * 329.02796 * 1 2 3 31 31 H 1.08004 * 119.96916 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.92912 * 180.27812 * 4 3 2 33 33 H 1.08000 * 119.95866 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47518 * 90.00314 * 7 6 5 35 35 H 1.09000 * 109.47462 * 210.00081 * 7 6 5 36 36 H 1.09003 * 109.47774 * 329.99839 * 7 6 5 37 37 H 0.96996 * 120.00144 * 55.16153 * 9 8 6 38 38 H 1.09003 * 109.47330 * 210.00208 * 13 12 10 39 39 H 1.09005 * 109.47212 * 329.99875 * 13 12 10 40 40 H 0.97000 * 120.00604 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47168 * 210.00135 * 22 12 10 42 42 H 1.08998 * 109.47684 * 330.00354 * 22 12 10 43 43 H 1.08001 * 126.58416 * 0.03322 * 24 23 22 44 44 H 1.07993 * 126.58153 * 179.97438 * 25 24 23 45 45 H 1.08001 * 125.78625 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2762 0.0011 0.0062 6 6 3.5907 -1.1979 0.0009 7 6 4.3490 -2.5002 0.0014 8 6 2.2021 -1.2022 -0.0049 9 7 1.5046 -2.4154 -0.0097 10 6 0.5947 -2.6658 -0.9720 11 8 0.4069 -1.8537 -1.8572 12 7 -0.1071 -3.8162 -0.9529 13 6 -1.0957 -4.0887 -1.9991 14 6 -0.4302 -4.8078 -3.1442 15 1 0.6238 -5.0384 -3.0974 16 6 -1.1668 -5.1703 -4.2519 17 7 -2.4500 -4.8881 -4.3095 18 14 -0.3417 -6.0611 -5.6715 19 1 -0.4196 -7.5272 -5.4480 20 1 -1.0321 -5.7165 -6.9403 21 1 1.0821 -5.6479 -5.7546 22 6 0.1195 -4.7948 0.1135 23 6 -0.8067 -4.5050 1.2664 24 6 -2.0436 -5.0085 1.4274 25 6 -2.5487 -4.4753 2.6356 26 6 -1.5900 -3.6785 3.1408 27 8 -0.5349 -3.7051 2.3104 28 1 -0.3633 0.0175 -1.0276 29 1 -0.3634 -0.8986 0.4986 30 1 -0.3633 0.8811 0.5289 31 1 1.6583 2.1311 -0.0004 32 1 4.1194 2.1328 0.0107 33 1 5.3561 0.0051 0.0106 34 1 4.5275 -2.8164 1.0292 35 1 3.7649 -3.2610 -0.5164 36 1 5.3031 -2.3654 -0.5082 37 1 1.6760 -3.0761 0.6794 38 1 -1.8925 -4.7116 -1.5928 39 1 -1.5158 -3.1482 -2.3558 40 1 -2.9684 -5.1435 -5.0886 41 1 -0.0758 -5.7977 -0.2662 42 1 1.1533 -4.7298 0.4528 43 1 -2.5532 -5.6893 0.7617 44 1 -3.5182 -4.6704 3.0696 45 1 -1.6557 -3.1166 4.0608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156060436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:16 Heat of formation + Delta-G solvation = 20.848889 kcal Electronic energy + Delta-G solvation = -28687.594986 eV Core-core repulsion = 24865.238769 eV Total energy + Delta-G solvation = -3822.356217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35750 -40.42242 -38.54461 -35.35089 -34.37395 -33.29819 -32.81883 -32.61823 -30.43594 -30.16098 -27.62339 -26.60258 -26.43113 -25.41878 -23.20249 -21.53937 -21.36692 -20.77191 -20.48909 -19.30585 -17.94465 -17.37566 -16.88009 -16.32956 -15.73664 -15.66655 -15.26375 -14.76204 -14.63749 -14.21695 -13.98831 -13.69333 -13.50863 -13.19825 -12.82233 -12.78122 -12.70591 -12.63982 -12.56698 -12.47781 -12.18284 -11.71116 -11.59987 -11.38547 -11.25764 -11.05480 -10.97309 -10.90963 -10.60553 -10.19089 -9.79475 -9.69387 -9.50025 -9.26644 -8.44921 -8.36824 -8.33920 -8.08051 -7.70717 -6.05442 -4.10127 1.49324 1.57024 1.86980 2.78926 3.13311 3.29507 3.31614 3.37079 3.42576 3.80415 3.99523 4.38366 4.50564 4.89249 4.94406 4.98381 5.09428 5.14510 5.23171 5.29031 5.37152 5.43869 5.54539 5.63449 5.67425 5.72745 5.80151 5.96153 5.97096 5.98096 6.10146 6.15466 6.24284 6.25977 6.51726 6.57897 6.63105 6.68269 6.70297 6.83954 6.90255 7.28752 7.34532 7.35342 7.48328 7.66415 7.92362 8.20829 8.54015 8.91141 9.26818 9.55629 11.02487 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008782 B = 0.005116 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.716488 B = 5471.668822 C = 7433.440383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.067 4.067 3 C -0.117 4.117 4 C -0.127 4.127 5 C -0.119 4.119 6 C -0.100 4.100 7 C -0.112 4.112 8 C 0.171 3.829 9 N -0.698 5.698 10 C 0.704 3.296 11 O -0.560 6.560 12 N -0.605 5.605 13 C 0.263 3.737 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.193 3.807 23 C -0.030 4.030 24 C -0.191 4.191 25 C -0.213 4.213 26 C -0.048 4.048 27 O -0.177 6.177 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.985 4.583 16.052 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.070 4.070 3 C -0.136 4.136 4 C -0.146 4.146 5 C -0.137 4.137 6 C -0.102 4.102 7 C -0.169 4.169 8 C 0.076 3.924 9 N -0.351 5.351 10 C 0.406 3.594 11 O -0.435 6.435 12 N -0.339 5.339 13 C 0.144 3.856 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.068 3.932 23 C -0.082 4.082 24 C -0.211 4.211 25 C -0.232 4.232 26 C -0.116 4.116 27 O -0.073 6.073 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.168 0.832 44 H 0.162 0.838 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.872 5.253 15.237 17.937 hybrid contribution 0.089 -0.917 -0.407 1.008 sum 7.961 4.336 14.830 17.381 Atomic orbital electron populations 1.20827 0.90830 1.01216 1.03609 1.19940 0.96545 0.91954 0.98517 1.20850 0.94100 0.97011 1.01638 1.21001 0.94156 0.97719 1.01707 1.20760 0.99286 0.91530 1.02150 1.19864 0.92263 0.95944 1.02139 1.20710 0.99790 0.94554 1.01844 1.17048 0.89378 0.85017 1.00924 1.42814 1.42894 1.18276 1.31126 1.15871 0.79115 0.82789 0.81602 1.90911 1.68861 1.46734 1.37011 1.47642 1.42481 1.16506 1.27317 1.19251 0.85331 0.97693 0.83347 1.21444 0.95912 1.37177 1.02106 0.92393 1.24905 0.94816 0.96028 0.98168 1.69926 1.06408 1.46813 1.30093 0.86515 0.79653 0.79580 0.81781 1.20652 1.21126 1.19918 1.19802 0.95282 0.95598 0.82563 1.23329 0.98486 0.95964 0.90415 1.21690 0.95245 1.05186 0.98973 1.21823 1.01190 1.02313 0.97915 1.23916 0.86555 1.03977 0.97192 1.83993 1.39523 1.54917 1.28839 0.89250 0.92249 0.92768 0.86172 0.86350 0.86201 0.91495 0.91353 0.91497 0.76453 0.94746 0.93662 0.92709 0.86272 0.90706 0.83216 0.83782 0.78629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.32 36.01 0.30 -1.54 16 2 C -0.07 -1.11 5.49 -104.43 -0.57 -1.68 16 3 C -0.12 -1.64 9.70 -39.61 -0.38 -2.02 16 4 C -0.13 -1.58 10.04 -39.55 -0.40 -1.98 16 5 C -0.12 -1.50 9.70 -39.61 -0.38 -1.88 16 6 C -0.10 -1.42 5.90 -104.44 -0.62 -2.04 16 7 C -0.11 -1.32 9.72 36.00 0.35 -0.97 16 8 C 0.17 2.83 5.77 -83.69 -0.48 2.35 16 9 N -0.70 -11.80 3.68 -14.23 -0.05 -11.85 16 10 C 0.70 14.89 6.72 -86.92 -0.58 14.30 16 11 O -0.56 -14.21 13.08 5.29 0.07 -14.14 16 12 N -0.60 -12.51 2.44 -182.19 -0.44 -12.95 16 13 C 0.26 6.66 5.16 -5.20 -0.03 6.64 16 14 C -0.53 -14.53 9.39 -34.44 -0.32 -14.86 16 15 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 18 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.19 3.07 5.72 -5.19 -0.03 3.04 16 23 C -0.03 -0.47 6.90 -35.62 -0.25 -0.71 16 24 C -0.19 -2.90 10.81 -39.70 -0.43 -3.33 16 25 C -0.21 -2.78 10.91 -39.70 -0.43 -3.22 16 26 C -0.05 -0.59 12.09 29.42 0.36 -0.24 16 27 O -0.18 -2.55 10.65 5.73 0.06 -2.49 16 28 H 0.09 1.77 6.76 -51.93 -0.35 1.42 16 29 H 0.06 1.08 6.77 -51.93 -0.35 0.72 16 30 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.90 7.46 -51.93 -0.39 0.51 16 36 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 37 H 0.40 5.74 6.47 -40.82 -0.26 5.48 16 38 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.12 1.83 8.07 -51.93 -0.42 1.41 16 42 H 0.07 0.98 6.33 -51.93 -0.33 0.65 16 43 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 44 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.20 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -33.42 377.94 -9.21 -42.63 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.25 Total: 8.35 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -4.00 Total: -6.48 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.24 Total: -50.17 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.13 Total: -16.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.42 -9.21 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156060436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.475 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds