Wall clock time and date at job start Tue Mar 31 2020 15:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38113 * 120.03348 * 2 1 4 4 C 1.38285 * 120.06908 * 179.70335 * 3 2 1 5 5 C 1.38282 * 120.13628 * 0.29928 * 4 3 2 6 6 C 1.38115 * 120.07081 * 359.95442 * 5 4 3 7 7 C 1.50695 * 120.03159 * 180.02562 * 6 5 4 8 8 C 1.38862 * 119.93093 * 0.02562 * 6 5 4 9 9 N 1.39943 * 120.06991 * 180.02562 * 8 6 5 10 10 C 1.34778 * 120.00058 * 235.16420 * 9 8 6 11 11 O 1.21589 * 119.99838 * 2.07106 * 10 9 8 12 12 N 1.34776 * 120.00216 * 182.07496 * 10 9 8 13 13 C 1.46493 * 120.00158 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47465 * 89.99771 * 13 12 10 15 15 H 1.07996 * 119.99523 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00107 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00106 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46635 * 90.00536 * 18 16 14 20 20 H 1.48502 * 109.46863 * 209.99974 * 18 16 14 21 21 H 1.48491 * 109.47580 * 330.00260 * 18 16 14 22 22 C 1.46498 * 119.99730 * 359.97438 * 12 10 9 23 23 C 1.50701 * 109.47117 * 90.00143 * 22 12 10 24 24 C 1.34516 * 125.78666 * 89.99897 * 23 22 12 25 25 C 1.41388 * 106.83975 * 180.02562 * 24 23 22 26 26 C 1.34515 * 106.83706 * 359.97438 * 25 24 23 27 27 O 1.34296 * 108.42352 * 359.73850 * 26 25 24 28 28 H 1.09004 * 109.47021 * 89.02302 * 1 2 3 29 29 H 1.09001 * 109.47422 * 209.02446 * 1 2 3 30 30 H 1.08998 * 109.47005 * 329.02796 * 1 2 3 31 31 H 1.08004 * 119.96916 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.92912 * 180.27812 * 4 3 2 33 33 H 1.08000 * 119.95866 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47518 * 90.00314 * 7 6 5 35 35 H 1.09000 * 109.47462 * 210.00081 * 7 6 5 36 36 H 1.09003 * 109.47774 * 329.99839 * 7 6 5 37 37 H 0.96996 * 120.00144 * 55.16153 * 9 8 6 38 38 H 1.09003 * 109.47330 * 210.00208 * 13 12 10 39 39 H 1.09005 * 109.47212 * 329.99875 * 13 12 10 40 40 H 0.97000 * 120.00604 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47168 * 210.00135 * 22 12 10 42 42 H 1.08998 * 109.47684 * 330.00354 * 22 12 10 43 43 H 1.08001 * 126.58416 * 0.03322 * 24 23 22 44 44 H 1.07993 * 126.58153 * 179.97438 * 25 24 23 45 45 H 1.08001 * 125.78625 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2762 0.0011 0.0062 6 6 3.5907 -1.1979 0.0009 7 6 4.3490 -2.5002 0.0014 8 6 2.2021 -1.2022 -0.0049 9 7 1.5046 -2.4154 -0.0097 10 6 0.5947 -2.6658 -0.9720 11 8 0.4069 -1.8537 -1.8572 12 7 -0.1071 -3.8162 -0.9529 13 6 -1.0957 -4.0887 -1.9991 14 6 -0.4302 -4.8078 -3.1442 15 1 0.6238 -5.0384 -3.0974 16 6 -1.1668 -5.1703 -4.2519 17 7 -2.4500 -4.8881 -4.3095 18 14 -0.3417 -6.0611 -5.6715 19 1 -0.4196 -7.5272 -5.4480 20 1 -1.0321 -5.7165 -6.9403 21 1 1.0821 -5.6479 -5.7546 22 6 0.1195 -4.7948 0.1135 23 6 -0.8067 -4.5050 1.2664 24 6 -2.0436 -5.0085 1.4274 25 6 -2.5487 -4.4753 2.6356 26 6 -1.5900 -3.6785 3.1408 27 8 -0.5349 -3.7051 2.3104 28 1 -0.3633 0.0175 -1.0276 29 1 -0.3634 -0.8986 0.4986 30 1 -0.3633 0.8811 0.5289 31 1 1.6583 2.1311 -0.0004 32 1 4.1194 2.1328 0.0107 33 1 5.3561 0.0051 0.0106 34 1 4.5275 -2.8164 1.0292 35 1 3.7649 -3.2610 -0.5164 36 1 5.3031 -2.3654 -0.5082 37 1 1.6760 -3.0761 0.6794 38 1 -1.8925 -4.7116 -1.5928 39 1 -1.5158 -3.1482 -2.3558 40 1 -2.9684 -5.1435 -5.0886 41 1 -0.0758 -5.7977 -0.2662 42 1 1.1533 -4.7298 0.4528 43 1 -2.5532 -5.6893 0.7617 44 1 -3.5182 -4.6704 3.0696 45 1 -1.6557 -3.1166 4.0608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156060436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:15 Heat of formation + Delta-G solvation = 2.216833 kcal Electronic energy + Delta-G solvation = -28688.402933 eV Core-core repulsion = 24865.238769 eV Total energy + Delta-G solvation = -3823.164164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.47372 -41.80722 -39.88339 -36.97953 -35.82696 -34.72944 -34.41945 -33.86134 -31.63987 -31.56309 -29.33580 -27.90355 -27.50967 -26.82260 -25.06596 -22.70901 -22.64672 -21.94571 -21.64100 -20.72782 -19.38666 -18.83937 -18.40589 -17.93787 -17.06071 -16.91508 -16.73492 -16.19620 -15.94655 -15.74454 -15.35993 -15.01081 -14.70231 -14.55907 -14.41198 -14.01787 -13.97595 -13.81491 -13.74806 -13.63621 -13.54190 -13.28497 -13.05379 -12.81862 -12.73561 -12.54946 -12.47268 -12.21549 -12.12037 -12.08743 -11.75445 -11.17300 -10.83115 -10.76309 -10.61822 -9.74561 -9.44430 -9.41161 -9.10073 -8.20407 -6.34418 0.38826 0.47508 0.72820 1.37612 1.40771 1.50484 1.63729 1.90135 1.99107 2.30184 2.42419 2.84329 3.02612 3.10811 3.73576 3.87934 3.94612 3.99564 4.14233 4.15557 4.33760 4.40251 4.47226 4.50157 4.53830 4.62169 4.70574 4.80935 4.84003 4.90574 4.93483 4.95527 5.03759 5.17976 5.18973 5.21184 5.33169 5.50497 5.50939 5.54745 5.61490 5.65224 5.73248 5.77401 6.01314 6.06967 6.20089 6.22616 6.74170 7.00271 7.32925 7.67041 8.86690 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008782 B = 0.005116 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.716488 B = 5471.668822 C = 7433.440383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.095 4.095 3 C -0.125 4.125 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.106 4.106 7 C -0.110 4.110 8 C 0.134 3.866 9 N -0.678 5.678 10 C 0.703 3.297 11 O -0.612 6.612 12 N -0.609 5.609 13 C 0.285 3.715 14 C -0.540 4.540 15 H 0.055 0.945 16 C 0.011 3.989 17 N -0.927 5.927 18 Si 0.965 3.035 19 H -0.262 1.262 20 H -0.283 1.283 21 H -0.275 1.275 22 C 0.192 3.808 23 C -0.048 4.048 24 C -0.206 4.206 25 C -0.227 4.227 26 C -0.035 4.035 27 O -0.183 6.183 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.409 0.591 38 H 0.027 0.973 39 H -0.004 1.004 40 H 0.266 0.734 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.142 0.858 44 H 0.167 0.833 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.606 4.931 17.769 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.135 4.135 6 C -0.108 4.108 7 C -0.167 4.167 8 C 0.041 3.959 9 N -0.330 5.330 10 C 0.405 3.595 11 O -0.491 6.491 12 N -0.343 5.343 13 C 0.164 3.836 14 C -0.578 4.578 15 H 0.073 0.927 16 C -0.188 4.188 17 N -0.567 5.567 18 Si 0.790 3.210 19 H -0.187 1.187 20 H -0.209 1.209 21 H -0.200 1.200 22 C 0.069 3.931 23 C -0.100 4.100 24 C -0.226 4.226 25 C -0.246 4.246 26 C -0.102 4.102 27 O -0.080 6.080 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.156 0.844 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.249 0.751 38 H 0.045 0.955 39 H 0.014 0.986 40 H 0.075 0.925 41 H 0.139 0.861 42 H 0.122 0.878 43 H 0.160 0.840 44 H 0.185 0.815 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 10.529 5.576 17.024 20.779 hybrid contribution -0.714 -0.923 -0.830 1.432 sum 9.815 4.653 16.194 19.499 Atomic orbital electron populations 1.20630 0.92127 1.01348 1.01203 1.20083 0.96003 0.93295 1.00369 1.21138 0.95237 0.96728 1.01248 1.21447 0.93520 0.99319 0.99453 1.21211 1.01020 0.90778 1.00478 1.20205 0.91346 0.97883 1.01408 1.20756 0.99814 0.92804 1.03330 1.17420 0.90619 0.84549 1.03339 1.42451 1.41595 1.18921 1.30054 1.16007 0.79488 0.82182 0.81808 1.90869 1.70509 1.48365 1.39310 1.47428 1.41635 1.17598 1.27674 1.18627 0.86083 0.94612 0.84314 1.21696 0.95796 1.37268 1.03090 0.92707 1.25786 0.95381 0.96766 1.00836 1.70050 1.07821 1.47809 1.30997 0.85453 0.78221 0.79177 0.78167 1.18654 1.20904 1.19986 1.19954 0.97244 0.94369 0.81576 1.23036 0.98602 0.97305 0.91032 1.21891 0.95464 1.05290 0.99976 1.22127 1.02597 1.02641 0.97249 1.24789 0.85196 1.02769 0.97466 1.83983 1.40485 1.54656 1.28836 0.93101 0.94283 0.90220 0.84379 0.82814 0.82819 0.89117 0.93316 0.89726 0.75132 0.95492 0.98595 0.92475 0.86098 0.87762 0.84044 0.81508 0.74379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.45 8.32 71.24 0.59 -2.86 16 2 C -0.10 -3.17 5.49 -19.74 -0.11 -3.28 16 3 C -0.13 -3.30 9.70 22.25 0.22 -3.09 16 4 C -0.12 -2.57 10.04 22.29 0.22 -2.34 16 5 C -0.12 -2.54 9.70 22.25 0.22 -2.32 16 6 C -0.11 -2.83 5.90 -19.75 -0.12 -2.95 16 7 C -0.11 -2.35 9.72 71.23 0.69 -1.66 16 8 C 0.13 4.45 5.77 38.14 0.22 4.67 16 9 N -0.68 -23.42 3.68 -317.18 -1.17 -24.59 16 10 C 0.70 31.33 6.72 179.05 1.20 32.53 16 11 O -0.61 -33.24 13.08 -3.99 -0.05 -33.30 16 12 N -0.61 -26.61 2.44 -848.57 -2.07 -28.67 16 13 C 0.28 15.43 5.16 85.64 0.44 15.87 16 14 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 15 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 16 C 0.01 0.66 5.46 84.66 0.46 1.12 16 17 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 18 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 22 C 0.19 6.27 5.72 85.63 0.49 6.76 16 23 C -0.05 -1.52 6.90 24.83 0.17 -1.35 16 24 C -0.21 -6.40 10.81 22.19 0.24 -6.17 16 25 C -0.23 -5.70 10.91 22.19 0.24 -5.46 16 26 C -0.03 -0.78 12.09 66.97 0.81 0.02 16 27 O -0.18 -5.15 10.65 -2.41 -0.03 -5.18 16 28 H 0.05 2.20 6.76 -2.38 -0.02 2.18 16 29 H 0.04 1.49 6.77 -2.39 -0.02 1.48 16 30 H 0.08 2.29 8.09 -2.39 -0.02 2.27 16 31 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 32 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.05 1.23 7.46 -2.39 -0.02 1.21 16 36 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 37 H 0.41 11.79 6.47 -92.71 -0.60 11.19 16 38 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 39 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 40 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.12 3.85 8.07 -2.39 -0.02 3.83 16 42 H 0.10 2.72 6.33 -2.39 -0.02 2.70 16 43 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 45 H 0.24 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -77.64 377.94 5.64 -72.00 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.41 Total: 29.62 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 6.24 Total: -1.17 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -2.95 Total: -108.99 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.08 Total: -38.47 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -77.64 5.64 -72.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156060436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.213 kcal (2) G-P(sol) polarization free energy of solvation -77.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds