Wall clock time and date at job start Tue Mar 31 2020 15:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.92638 * 2 1 4 4 C 1.38103 * 120.07139 * 180.02562 * 3 2 1 5 5 C 1.38891 * 119.93056 * 359.97137 * 4 3 2 6 6 N 1.39839 * 120.07396 * 179.97438 * 5 4 3 7 7 C 1.46500 * 119.99931 * 188.08092 * 6 5 4 8 8 C 1.50703 * 109.47191 * 264.01799 * 7 6 5 9 9 H 1.07997 * 119.99982 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00083 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00024 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46910 * 60.00082 * 12 10 8 14 14 H 1.48506 * 109.46933 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47288 * 300.00027 * 12 10 8 16 16 C 1.34767 * 120.00060 * 8.08389 * 6 5 4 17 17 O 1.21513 * 120.00266 * 5.84497 * 16 6 5 18 18 C 1.48289 * 120.00360 * 185.84393 * 16 6 5 19 19 C 1.42285 * 126.94372 * 174.39891 * 18 16 6 20 20 C 1.35310 * 103.92358 * 179.97438 * 19 18 16 21 21 C 1.50702 * 126.66602 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47107 * 119.99632 * 21 20 19 23 23 C 1.52996 * 109.46900 * 240.00027 * 21 20 19 24 24 O 1.34024 * 106.67020 * 0.26132 * 20 19 18 25 25 N 1.20902 * 111.85023 * 359.52953 * 24 20 19 26 26 C 1.38894 * 119.85311 * 0.26289 * 5 4 3 27 27 C 1.38108 * 119.92567 * 359.50450 * 26 5 4 28 28 H 1.09005 * 109.47141 * 90.00186 * 1 2 3 29 29 H 1.09007 * 109.47287 * 209.99624 * 1 2 3 30 30 H 1.08991 * 109.47307 * 329.99680 * 1 2 3 31 31 H 1.08001 * 119.96204 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.03342 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47094 * 24.01789 * 7 6 5 34 34 H 1.08996 * 109.47028 * 144.01606 * 7 6 5 35 35 H 0.96997 * 120.00191 * 180.02562 * 11 10 8 36 36 H 1.07997 * 128.04019 * 359.95515 * 19 18 16 37 37 H 1.08998 * 109.46834 * 359.97438 * 21 20 19 38 38 H 1.08998 * 109.46885 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.47501 * 300.00214 * 22 21 20 40 40 H 1.08998 * 109.47126 * 60.00359 * 22 21 20 41 41 H 1.08998 * 109.47202 * 299.99560 * 23 21 20 42 42 H 1.08999 * 109.47242 * 59.99946 * 23 21 20 43 43 H 1.08998 * 109.47127 * 179.97438 * 23 21 20 44 44 H 1.08004 * 120.03812 * 179.73862 * 26 5 4 45 45 H 1.08006 * 119.96378 * 180.21119 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6723 0.0001 -0.0016 7 6 6.4047 -1.2561 -0.1798 8 6 6.7852 -1.8115 1.1685 9 1 6.5094 -1.2815 2.0681 10 6 7.4862 -2.9956 1.2534 11 7 7.8234 -3.6403 0.1578 12 14 7.9584 -3.6837 2.9247 13 1 6.7306 -3.9357 3.7210 14 1 8.7018 -4.9565 2.7439 15 1 8.8188 -2.7055 3.6376 16 6 6.3463 1.1557 0.1615 17 8 5.7437 2.1800 0.4151 18 6 7.8233 1.1775 0.0313 19 6 8.6678 2.3221 0.0632 20 6 9.9116 1.8136 -0.0952 21 6 11.2027 2.5898 -0.1371 22 6 12.1163 2.1216 0.9973 23 6 11.8959 2.3544 -1.4805 24 8 9.7720 0.4858 -0.2130 25 7 8.6141 0.1466 -0.1357 26 6 3.5780 -1.2019 -0.0054 27 6 2.1969 -1.1984 0.0000 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6550 2.1328 -0.0004 32 1 4.1161 2.1384 -0.0001 33 1 5.7730 -1.9738 -0.7033 34 1 7.3060 -1.0713 -0.7642 35 1 8.3162 -4.4736 0.2176 36 1 8.3824 3.3566 0.1852 37 1 10.9915 3.6526 -0.0189 38 1 13.0502 2.6828 0.9667 39 1 11.6224 2.2893 1.9543 40 1 12.3274 1.0589 0.8787 41 1 12.1070 1.2917 -1.5992 42 1 11.2450 2.6881 -2.2887 43 1 12.8294 2.9162 -1.5110 44 1 4.1162 -2.1383 -0.0096 45 1 1.6551 -2.1328 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161914984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:15 Heat of formation + Delta-G solvation = 65.249432 kcal Electronic energy + Delta-G solvation = -28091.678423 eV Core-core repulsion = 24271.247557 eV Total energy + Delta-G solvation = -3820.430865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.58526 -40.18298 -38.04053 -36.05655 -35.46365 -33.59836 -32.71286 -31.36008 -30.41035 -30.25559 -27.53752 -27.27241 -26.43417 -24.22662 -23.38550 -22.93451 -21.93927 -21.73098 -20.48624 -18.61505 -17.32722 -16.96501 -16.69216 -16.53509 -16.23921 -15.18889 -15.00371 -14.61258 -14.55447 -14.31856 -14.02629 -13.57771 -13.41381 -13.30640 -13.28948 -12.99329 -12.86677 -12.40670 -12.29224 -11.98235 -11.85828 -11.83587 -11.50563 -11.37025 -11.35624 -11.14523 -11.00210 -10.88141 -10.59478 -10.27574 -10.17128 -10.05484 -9.97834 -9.13355 -9.07766 -8.98466 -8.49544 -8.38170 -7.15541 -6.14686 -4.20044 1.50007 1.86851 1.96765 2.22827 3.25988 3.27453 3.29917 3.33579 3.48433 3.66290 4.32307 4.42424 4.48031 4.56346 4.84414 4.96828 5.16814 5.20552 5.28201 5.30744 5.37326 5.51311 5.51622 5.55608 5.62288 5.67600 5.72483 5.78913 5.81851 5.88417 5.94561 6.06971 6.12146 6.16073 6.17740 6.21325 6.25671 6.51252 6.76239 6.92750 6.93608 7.11470 7.21961 7.34074 7.71792 7.77014 8.00916 8.02560 8.47816 8.72485 8.82811 9.44533 10.92958 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.004499 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.219342 B = 6222.598873 C = 8344.626155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.129 4.129 3 C -0.106 4.106 4 C -0.168 4.168 5 C 0.164 3.836 6 N -0.520 5.520 7 C 0.217 3.783 8 C -0.528 4.528 9 H 0.055 0.945 10 C 0.075 3.925 11 N -0.884 5.884 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.277 1.277 16 C 0.599 3.401 17 O -0.534 6.534 18 C -0.036 4.036 19 C -0.183 4.183 20 C -0.051 4.051 21 C -0.008 4.008 22 C -0.151 4.151 23 C -0.150 4.150 24 O 0.126 5.874 25 N -0.260 5.260 26 C -0.138 4.138 27 C -0.102 4.102 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.171 0.829 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.265 0.735 36 H 0.173 0.827 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.139 0.861 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 10.667 -2.827 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.130 4.130 3 C -0.125 4.125 4 C -0.188 4.188 5 C 0.068 3.932 6 N -0.239 5.239 7 C 0.099 3.901 8 C -0.566 4.566 9 H 0.073 0.927 10 C -0.129 4.129 11 N -0.522 5.522 12 Si 0.721 3.279 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.202 1.202 16 C 0.388 3.612 17 O -0.413 6.413 18 C -0.194 4.194 19 C -0.205 4.205 20 C -0.113 4.113 21 C -0.027 4.027 22 C -0.209 4.209 23 C -0.208 4.208 24 O 0.046 5.954 25 N 0.044 4.956 26 C -0.158 4.158 27 C -0.121 4.121 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.187 0.813 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.190 0.810 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.157 0.843 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.101 9.663 -2.871 10.141 hybrid contribution 0.183 0.091 1.148 1.166 sum 1.285 9.755 -1.722 9.988 Atomic orbital electron populations 1.20665 0.91950 1.01988 1.01484 1.19798 0.95518 0.93463 1.04200 1.20862 0.93785 0.96905 1.00916 1.22387 0.94350 0.99625 1.02399 1.18013 0.82320 0.94413 0.98453 1.45906 1.04306 1.10209 1.63464 1.20155 0.92648 0.78266 0.99021 1.21134 1.36726 1.07201 0.91560 0.92655 1.24781 0.95104 0.96335 0.96672 1.69900 1.38555 1.16643 1.27118 0.86631 0.78784 0.78325 0.84192 1.20146 1.20976 1.20238 1.17014 0.84174 0.83056 0.76916 1.90424 1.67090 1.34101 1.49658 1.23158 0.96181 0.90200 1.09902 1.22263 0.90350 1.00573 1.07313 1.24372 0.97621 0.84553 1.04771 1.19697 0.88142 0.97670 0.97197 1.21890 0.98855 1.02507 0.97602 1.21888 1.00307 1.03075 0.95498 1.84939 1.23422 1.22408 1.64615 1.74966 0.88516 1.20617 1.11486 1.21121 0.94077 0.97660 1.02950 1.20744 0.93357 0.97168 1.00830 0.91988 0.92144 0.92218 0.86635 0.81298 0.93703 0.90983 0.92504 0.80961 0.88280 0.91629 0.92081 0.91551 0.91567 0.92150 0.91631 0.84291 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.01 36.00 0.36 -0.88 16 2 C -0.13 -2.05 5.88 -104.59 -0.62 -2.67 16 3 C -0.11 -1.79 9.69 -39.61 -0.38 -2.17 16 4 C -0.17 -3.33 8.97 -39.39 -0.35 -3.68 16 5 C 0.16 3.55 6.48 -83.72 -0.54 3.00 16 6 N -0.52 -12.10 2.70 -115.64 -0.31 -12.42 16 7 C 0.22 5.48 4.21 -5.19 -0.02 5.46 16 8 C -0.53 -14.33 8.70 -34.44 -0.30 -14.63 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.07 2.03 5.46 -17.82 -0.10 1.94 16 11 N -0.88 -24.73 13.29 55.43 0.74 -23.99 16 12 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.60 13.47 7.55 -12.13 -0.09 13.38 16 17 O -0.53 -11.89 13.47 5.35 0.07 -11.82 16 18 C -0.04 -0.75 6.89 -82.53 -0.57 -1.32 16 19 C -0.18 -2.98 10.91 -39.07 -0.43 -3.40 16 20 C -0.05 -0.74 5.98 -35.35 -0.21 -0.95 16 21 C -0.01 -0.08 3.34 -91.77 -0.31 -0.38 16 22 C -0.15 -1.43 9.18 37.16 0.34 -1.09 16 23 C -0.15 -1.34 9.18 37.16 0.34 -0.99 16 24 O 0.13 2.34 11.18 17.23 0.19 2.53 16 25 N -0.26 -5.67 8.16 33.29 0.27 -5.40 16 26 C -0.14 -2.80 9.15 -39.39 -0.36 -3.16 16 27 C -0.10 -1.76 9.69 -39.61 -0.38 -2.14 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.66 8.08 -51.92 -0.42 0.24 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.17 3.47 4.73 -55.11 -0.26 3.21 16 33 H 0.05 1.17 6.22 -51.93 -0.32 0.84 16 34 H 0.07 1.90 5.21 -51.93 -0.27 1.63 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.17 2.36 8.06 -52.49 -0.42 1.93 16 37 H 0.10 0.80 8.12 -51.93 -0.42 0.38 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.14 3.00 6.25 -52.48 -0.33 2.67 16 45 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -30.55 374.91 -8.25 -38.80 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.22 Total: 3.97 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -3.62 Total: -13.70 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.70 Total: -41.80 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.26 Total: -9.29 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.55 -8.25 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161914984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.049 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds