Wall clock time and date at job start Tue Mar 31 2020 15:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.92638 * 2 1 4 4 C 1.38103 * 120.07139 * 180.02562 * 3 2 1 5 5 C 1.38891 * 119.93056 * 359.97137 * 4 3 2 6 6 N 1.39839 * 120.07396 * 179.97438 * 5 4 3 7 7 C 1.46500 * 119.99931 * 188.08092 * 6 5 4 8 8 C 1.50703 * 109.47191 * 264.01799 * 7 6 5 9 9 H 1.07997 * 119.99982 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00083 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00024 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46910 * 60.00082 * 12 10 8 14 14 H 1.48506 * 109.46933 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47288 * 300.00027 * 12 10 8 16 16 C 1.34767 * 120.00060 * 8.08389 * 6 5 4 17 17 O 1.21513 * 120.00266 * 5.84497 * 16 6 5 18 18 C 1.48289 * 120.00360 * 185.84393 * 16 6 5 19 19 C 1.42285 * 126.94372 * 174.39891 * 18 16 6 20 20 C 1.35310 * 103.92358 * 179.97438 * 19 18 16 21 21 C 1.50702 * 126.66602 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47107 * 119.99632 * 21 20 19 23 23 C 1.52996 * 109.46900 * 240.00027 * 21 20 19 24 24 O 1.34024 * 106.67020 * 0.26132 * 20 19 18 25 25 N 1.20902 * 111.85023 * 359.52953 * 24 20 19 26 26 C 1.38894 * 119.85311 * 0.26289 * 5 4 3 27 27 C 1.38108 * 119.92567 * 359.50450 * 26 5 4 28 28 H 1.09005 * 109.47141 * 90.00186 * 1 2 3 29 29 H 1.09007 * 109.47287 * 209.99624 * 1 2 3 30 30 H 1.08991 * 109.47307 * 329.99680 * 1 2 3 31 31 H 1.08001 * 119.96204 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.03342 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47094 * 24.01789 * 7 6 5 34 34 H 1.08996 * 109.47028 * 144.01606 * 7 6 5 35 35 H 0.96997 * 120.00191 * 180.02562 * 11 10 8 36 36 H 1.07997 * 128.04019 * 359.95515 * 19 18 16 37 37 H 1.08998 * 109.46834 * 359.97438 * 21 20 19 38 38 H 1.08998 * 109.46885 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.47501 * 300.00214 * 22 21 20 40 40 H 1.08998 * 109.47126 * 60.00359 * 22 21 20 41 41 H 1.08998 * 109.47202 * 299.99560 * 23 21 20 42 42 H 1.08999 * 109.47242 * 59.99946 * 23 21 20 43 43 H 1.08998 * 109.47127 * 179.97438 * 23 21 20 44 44 H 1.08004 * 120.03812 * 179.73862 * 26 5 4 45 45 H 1.08006 * 119.96378 * 180.21119 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6723 0.0001 -0.0016 7 6 6.4047 -1.2561 -0.1798 8 6 6.7852 -1.8115 1.1685 9 1 6.5094 -1.2815 2.0681 10 6 7.4862 -2.9956 1.2534 11 7 7.8234 -3.6403 0.1578 12 14 7.9584 -3.6837 2.9247 13 1 6.7306 -3.9357 3.7210 14 1 8.7018 -4.9565 2.7439 15 1 8.8188 -2.7055 3.6376 16 6 6.3463 1.1557 0.1615 17 8 5.7437 2.1800 0.4151 18 6 7.8233 1.1775 0.0313 19 6 8.6678 2.3221 0.0632 20 6 9.9116 1.8136 -0.0952 21 6 11.2027 2.5898 -0.1371 22 6 12.1163 2.1216 0.9973 23 6 11.8959 2.3544 -1.4805 24 8 9.7720 0.4858 -0.2130 25 7 8.6141 0.1466 -0.1357 26 6 3.5780 -1.2019 -0.0054 27 6 2.1969 -1.1984 0.0000 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6550 2.1328 -0.0004 32 1 4.1161 2.1384 -0.0001 33 1 5.7730 -1.9738 -0.7033 34 1 7.3060 -1.0713 -0.7642 35 1 8.3162 -4.4736 0.2176 36 1 8.3824 3.3566 0.1852 37 1 10.9915 3.6526 -0.0189 38 1 13.0502 2.6828 0.9667 39 1 11.6224 2.2893 1.9543 40 1 12.3274 1.0589 0.8787 41 1 12.1070 1.2917 -1.5992 42 1 11.2450 2.6881 -2.2887 43 1 12.8294 2.9162 -1.5110 44 1 4.1162 -2.1383 -0.0096 45 1 1.6551 -2.1328 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161914984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:15 Heat of formation + Delta-G solvation = 49.989819 kcal Electronic energy + Delta-G solvation = -28092.340129 eV Core-core repulsion = 24271.247557 eV Total energy + Delta-G solvation = -3821.092572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.07255 -41.82708 -39.53805 -37.28702 -36.89640 -35.07510 -34.70717 -32.75127 -31.87857 -31.56496 -29.46855 -27.99425 -27.82827 -25.79640 -25.19009 -24.18763 -23.27920 -23.20490 -21.89011 -20.08366 -18.99036 -18.61483 -18.47040 -18.00078 -17.84489 -16.67656 -16.48551 -16.23863 -16.00667 -15.77240 -15.17924 -15.04897 -14.64531 -14.57144 -14.45943 -14.42218 -14.19783 -14.08378 -13.62303 -13.37405 -13.00949 -12.99168 -12.94036 -12.82594 -12.66344 -12.40476 -12.27957 -12.13898 -12.06244 -11.99625 -11.90506 -11.65314 -11.46784 -10.85199 -10.71549 -10.58982 -10.34331 -9.85041 -8.75942 -8.23634 -6.37248 -0.05230 0.49689 0.54412 0.80760 1.32295 1.32955 1.41005 1.75117 2.02359 2.20118 2.34273 2.91121 2.93441 3.06701 3.38560 3.85083 3.96295 4.06513 4.06696 4.07344 4.19244 4.22403 4.37806 4.44524 4.45840 4.55456 4.60222 4.85113 4.85403 4.91859 4.92772 4.93290 4.99980 5.01246 5.15784 5.18024 5.18268 5.23836 5.38617 5.40374 5.43538 5.48428 5.59936 5.68019 5.75670 5.94135 6.21153 6.23954 6.64522 6.85206 7.27027 7.30236 8.82204 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.004499 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.219342 B = 6222.598873 C = 8344.626155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.116 4.116 3 C -0.102 4.102 4 C -0.180 4.180 5 C 0.125 3.875 6 N -0.530 5.530 7 C 0.236 3.764 8 C -0.532 4.532 9 H 0.034 0.966 10 C 0.035 3.965 11 N -0.909 5.909 12 Si 0.949 3.051 13 H -0.273 1.273 14 H -0.271 1.271 15 H -0.278 1.278 16 C 0.589 3.411 17 O -0.540 6.540 18 C -0.065 4.065 19 C -0.185 4.185 20 C -0.030 4.030 21 C -0.006 4.006 22 C -0.151 4.151 23 C -0.149 4.149 24 O 0.122 5.878 25 N -0.305 5.305 26 C -0.158 4.158 27 C -0.101 4.101 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.160 0.840 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.269 0.731 36 H 0.200 0.800 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.114 0.886 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 12.279 -2.314 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.121 4.121 4 C -0.199 4.199 5 C 0.031 3.969 6 N -0.249 5.249 7 C 0.117 3.883 8 C -0.570 4.570 9 H 0.052 0.948 10 C -0.166 4.166 11 N -0.547 5.547 12 Si 0.774 3.226 13 H -0.198 1.198 14 H -0.196 1.196 15 H -0.203 1.203 16 C 0.379 3.621 17 O -0.420 6.420 18 C -0.221 4.221 19 C -0.207 4.207 20 C -0.093 4.093 21 C -0.025 4.025 22 C -0.208 4.208 23 C -0.206 4.206 24 O 0.042 5.958 25 N -0.001 5.001 26 C -0.178 4.178 27 C -0.120 4.120 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.167 0.833 32 H 0.177 0.823 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.217 0.783 37 H 0.149 0.851 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.550 11.276 -2.361 11.533 hybrid contribution 0.303 -0.329 0.952 1.052 sum 0.853 10.947 -1.409 11.070 Atomic orbital electron populations 1.20753 0.88257 1.03657 1.03146 1.20302 0.98025 0.92279 1.01121 1.21256 0.92552 0.98936 0.99311 1.22380 0.95833 0.98359 1.03344 1.18373 0.81799 0.95762 1.00987 1.45853 1.05208 1.09679 1.64141 1.19716 0.91936 0.78853 0.97822 1.21123 1.36984 1.07455 0.91456 0.94772 1.25435 0.94905 0.96447 0.99823 1.69985 1.39007 1.16987 1.28743 0.85766 0.78539 0.78003 0.80325 1.19804 1.19584 1.20333 1.17338 0.85108 0.82852 0.76782 1.90396 1.67543 1.33907 1.50165 1.23352 0.95689 0.91922 1.11182 1.22585 0.89920 1.00709 1.07521 1.25309 0.99272 0.82966 1.01712 1.20058 0.85824 0.98409 0.98183 1.21912 1.00033 1.02051 0.96823 1.21902 1.01525 1.02684 0.94507 1.84866 1.22169 1.24598 1.64184 1.74936 0.89656 1.22058 1.13486 1.21084 0.95649 0.96265 1.04804 1.21088 0.91999 0.99242 0.99641 0.90136 0.90748 0.90400 0.83259 0.82340 0.95551 0.92125 0.92215 0.78307 0.85105 0.88447 0.92811 0.93149 0.93032 0.92329 0.88587 0.86820 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.01 71.23 0.71 -1.28 16 2 C -0.12 -3.42 5.88 -19.84 -0.12 -3.54 16 3 C -0.10 -3.27 9.69 22.25 0.22 -3.05 16 4 C -0.18 -7.26 8.97 22.39 0.20 -7.05 16 5 C 0.13 5.71 6.48 38.18 0.25 5.96 16 6 N -0.53 -26.36 2.70 -638.06 -1.72 -28.08 16 7 C 0.24 12.80 4.21 85.63 0.36 13.16 16 8 C -0.53 -30.49 8.70 25.60 0.22 -30.27 16 9 H 0.03 2.06 7.81 -2.91 -0.02 2.03 16 10 C 0.04 1.98 5.46 84.65 0.46 2.44 16 11 N -0.91 -52.57 13.29 21.45 0.28 -52.29 16 12 Si 0.95 44.80 29.54 68.60 2.03 46.82 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 16 C 0.59 28.04 7.55 86.92 0.66 28.70 16 17 O -0.54 -25.08 13.47 -3.76 -0.05 -25.13 16 18 C -0.06 -2.81 6.89 42.95 0.30 -2.52 16 19 C -0.18 -6.03 10.91 22.60 0.25 -5.79 16 20 C -0.03 -0.86 5.98 25.01 0.15 -0.71 16 21 C -0.01 -0.10 3.34 -11.54 -0.04 -0.14 16 22 C -0.15 -2.54 9.18 71.98 0.66 -1.88 16 23 C -0.15 -2.31 9.18 71.98 0.66 -1.65 16 24 O 0.12 4.70 11.18 71.81 0.80 5.50 16 25 N -0.30 -14.07 8.16 -49.51 -0.40 -14.47 16 26 C -0.16 -6.72 9.15 22.40 0.20 -6.51 16 27 C -0.10 -3.41 9.69 22.25 0.22 -3.19 16 28 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.07 1.30 8.08 -2.38 -0.02 1.28 16 30 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 31 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 32 H 0.16 6.72 4.73 -44.55 -0.21 6.51 16 33 H 0.03 1.50 6.22 -2.39 -0.01 1.49 16 34 H 0.06 3.45 5.21 -2.39 -0.01 3.44 16 35 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.20 5.20 8.06 -2.91 -0.02 5.17 16 37 H 0.13 1.59 8.12 -2.39 -0.02 1.57 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.11 5.33 6.25 -2.91 -0.02 5.31 16 45 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -71.10 374.91 7.10 -64.00 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.81 Total: 20.97 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 5.36 Total: -17.32 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -1.84 Total: -94.85 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.75 Total: -19.63 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.10 7.10 -64.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161914984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.989 kcal (2) G-P(sol) polarization free energy of solvation -71.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds