Wall clock time and date at job start Tue Mar 31 2020 15:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34139 * 126.24500 * 2 1 4 4 C 1.30361 * 108.90512 * 180.14424 * 3 2 1 5 5 C 1.50699 * 125.48318 * 179.89046 * 4 3 2 6 6 C 1.53001 * 109.46841 * 89.69239 * 5 4 3 7 7 C 1.50703 * 109.47181 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99651 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00098 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99901 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.46782 * 35.00702 * 10 9 7 12 12 C 1.52997 * 109.47360 * 275.00682 * 10 9 7 13 13 C 1.50696 * 109.47122 * 155.00192 * 10 9 7 14 14 H 1.08005 * 119.99917 * 4.87589 * 13 10 9 15 15 C 1.37878 * 120.00536 * 184.87330 * 13 10 9 16 16 N 1.31511 * 120.00546 * 186.93814 * 15 13 10 17 17 Si 1.86804 * 119.99599 * 7.20992 * 15 13 10 18 18 H 1.48503 * 109.47289 * 269.72806 * 17 15 13 19 19 H 1.48500 * 109.46906 * 29.72812 * 17 15 13 20 20 H 1.48500 * 109.47137 * 149.72662 * 17 15 13 21 21 O 1.33997 * 109.03280 * 359.63013 * 4 3 2 22 22 C 1.35118 * 107.71569 * 0.22557 * 21 4 3 23 23 C 1.47826 * 126.58574 * 179.97438 * 22 21 4 24 24 C 1.39579 * 120.14295 * 133.14147 * 23 22 21 25 25 C 1.37959 * 119.84617 * 179.72232 * 24 23 22 26 26 C 1.38354 * 120.14796 * 0.53297 * 25 24 23 27 27 C 1.38350 * 120.29136 * 359.75960 * 26 25 24 28 28 C 1.37957 * 120.14731 * 359.96137 * 27 26 25 29 29 H 1.09001 * 109.47015 * 274.39637 * 1 2 3 30 30 H 1.08997 * 109.46707 * 34.39589 * 1 2 3 31 31 H 1.08997 * 109.46830 * 154.39433 * 1 2 3 32 32 H 1.09002 * 109.46664 * 329.69526 * 5 4 3 33 33 H 1.08992 * 109.47520 * 209.69420 * 5 4 3 34 34 H 1.08998 * 109.47212 * 59.99882 * 6 5 4 35 35 H 1.09005 * 109.47382 * 300.00040 * 6 5 4 36 36 H 0.96996 * 120.00351 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.47066 * 54.66166 * 12 10 9 38 38 H 1.09005 * 109.47215 * 174.66487 * 12 10 9 39 39 H 1.09003 * 109.47074 * 294.66228 * 12 10 9 40 40 H 0.97003 * 119.99466 * 355.21372 * 16 15 13 41 41 H 1.07995 * 120.07116 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.92111 * 180.27415 * 25 24 23 43 43 H 1.08001 * 119.85244 * 179.74443 * 26 25 24 44 44 H 1.08004 * 119.92659 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.07409 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3001 1.0818 0.0000 4 6 3.5445 0.6933 -0.0031 5 6 4.7452 1.6039 -0.0065 6 6 5.1506 1.9187 1.4348 7 6 6.3510 2.8299 1.4315 8 8 6.8343 3.1922 0.3798 9 7 6.8867 3.2430 2.5971 10 6 8.0539 4.1283 2.5938 11 1 7.9879 4.8134 1.7485 12 6 9.3288 3.2910 2.4734 13 6 8.0901 4.9167 3.8776 14 1 7.3668 4.7170 4.6545 15 6 9.0464 5.8929 4.0605 16 7 9.1658 6.4859 5.2283 17 14 10.1674 6.3786 2.6474 18 1 11.3892 5.5348 2.6722 19 1 9.4549 6.1802 1.3597 20 1 10.5493 7.8068 2.7869 21 8 3.5841 -0.6461 0.0030 22 6 2.3097 -1.0951 0.0051 23 6 1.8732 -2.5074 0.0110 24 6 0.8778 -2.9297 0.8936 25 6 0.4710 -4.2479 0.8900 26 6 1.0551 -5.1530 0.0217 27 6 2.0465 -4.7422 -0.8515 28 6 2.4585 -3.4256 -0.8621 29 1 -0.3633 0.0788 1.0247 30 1 -0.3632 0.8480 -0.5805 31 1 -0.3633 -0.9267 -0.4441 32 1 4.4971 2.5302 -0.5248 33 1 5.5728 1.1121 -0.5175 34 1 5.3985 0.9925 1.9531 35 1 4.3229 2.4107 1.9459 36 1 6.4999 2.9535 3.4382 37 1 9.2610 2.6503 1.5942 38 1 10.1899 3.9522 2.3756 39 1 9.4439 2.6741 3.3646 40 1 8.5372 6.2870 5.9397 41 1 0.4243 -2.2251 1.5750 42 1 -0.3023 -4.5750 1.5694 43 1 0.7359 -6.1847 0.0258 44 1 2.4988 -5.4537 -1.5265 45 1 3.2323 -3.1061 -1.5445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170944369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:10 Heat of formation + Delta-G solvation = -8.089993 kcal Electronic energy + Delta-G solvation = -26229.906938 eV Core-core repulsion = 22406.295836 eV Total energy + Delta-G solvation = -3823.611101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.51114 -39.46301 -39.16913 -35.42127 -35.21531 -34.21441 -32.56643 -32.31758 -31.45179 -30.29929 -29.65143 -27.36378 -25.38340 -24.73322 -23.08314 -22.64098 -21.66625 -21.00104 -20.51345 -19.58759 -17.93546 -17.82215 -16.97921 -16.68000 -16.27441 -15.81117 -15.35892 -15.23195 -15.08139 -14.28840 -14.23067 -13.93575 -13.89307 -13.54178 -13.33686 -13.16630 -13.01342 -13.00994 -12.63616 -12.44971 -12.25860 -12.15275 -11.88026 -11.70787 -11.59085 -11.46367 -11.17830 -11.07916 -10.72998 -10.55082 -10.09392 -9.79570 -9.77627 -9.44292 -9.29610 -8.90009 -8.53486 -8.45078 -8.20888 -6.56494 -4.24362 0.42553 0.91298 1.40071 2.38564 2.42322 3.17526 3.32525 3.35536 3.45370 3.59032 3.62926 4.07658 4.26652 4.40787 4.42817 4.47281 4.57081 4.64790 4.83260 4.92995 4.98756 5.01277 5.14688 5.20487 5.27467 5.32019 5.36164 5.46446 5.51230 5.57665 5.64030 5.70049 5.84183 5.89190 5.98723 6.01342 6.04645 6.14141 6.35232 6.43491 6.43783 6.60552 6.88341 7.25472 7.33404 7.55881 7.62609 8.21493 8.42527 8.67779 8.92513 9.46338 10.84157 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.001981 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.037976 B =14127.676487 C =14305.355053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.012 3.988 3 N -0.477 5.477 4 C 0.210 3.790 5 C -0.007 4.007 6 C -0.139 4.139 7 C 0.506 3.494 8 O -0.557 6.557 9 N -0.700 5.700 10 C 0.234 3.766 11 H 0.049 0.951 12 C -0.158 4.158 13 C -0.610 4.610 14 H 0.062 0.938 15 C 0.035 3.965 16 N -0.905 5.905 17 Si 1.051 2.949 18 H -0.281 1.281 19 H -0.274 1.274 20 H -0.287 1.287 21 O -0.192 6.192 22 C -0.025 4.025 23 C -0.011 4.011 24 C -0.093 4.093 25 C -0.118 4.118 26 C -0.111 4.111 27 C -0.118 4.118 28 C -0.096 4.096 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.394 0.606 37 H 0.033 0.967 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.844 -23.067 -10.545 31.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.109 4.109 3 N -0.206 5.206 4 C 0.004 3.996 5 C -0.046 4.046 6 C -0.180 4.180 7 C 0.290 3.710 8 O -0.437 6.437 9 N -0.348 5.348 10 C 0.130 3.870 11 H 0.067 0.933 12 C -0.217 4.217 13 C -0.648 4.648 14 H 0.080 0.920 15 C -0.171 4.171 16 N -0.538 5.538 17 Si 0.880 3.120 18 H -0.208 1.208 19 H -0.199 1.199 20 H -0.214 1.214 21 O -0.079 6.079 22 C -0.078 4.078 23 C -0.011 4.011 24 C -0.111 4.111 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.136 4.136 28 C -0.114 4.114 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.227 0.773 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.330 -21.200 -11.661 29.761 hybrid contribution -1.217 -1.856 1.018 2.442 sum -18.547 -23.057 -10.643 31.446 Atomic orbital electron populations 1.20180 0.86341 1.03390 1.03058 1.21813 0.97829 0.87113 1.04156 1.70318 1.00453 1.30979 1.18884 1.26437 0.95545 0.78759 0.98831 1.19891 0.89889 0.96601 0.98204 1.21650 0.98426 1.00973 0.96973 1.20258 0.84482 0.81452 0.84765 1.90663 1.63546 1.58254 1.31188 1.46262 1.32290 1.49131 1.07104 1.19224 0.80671 0.87926 0.99146 0.93323 1.22398 0.99614 1.00141 0.99524 1.22156 1.19597 1.21649 1.01378 0.92008 1.25719 0.97687 0.93024 1.00692 1.70836 1.36184 1.44137 1.02665 0.83908 0.76214 0.76466 0.75419 1.20803 1.19949 1.21371 1.84492 1.29547 1.24044 1.69792 1.21109 0.81232 0.94471 1.10960 1.17566 0.97976 0.87366 0.98208 1.21192 0.96367 0.96318 0.97188 1.21095 1.00307 0.92819 0.99371 1.21324 0.96182 0.99866 0.95488 1.21122 0.97593 0.95572 0.99340 1.21328 0.99054 0.93004 0.97981 0.90490 0.90321 0.90670 0.86495 0.87950 0.88877 0.88347 0.77329 0.94798 0.93090 0.93148 0.92168 0.85305 0.85248 0.85603 0.85407 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 9.40 36.01 0.34 -0.27 16 2 C 0.01 0.15 7.12 -82.46 -0.59 -0.44 16 3 N -0.48 -6.74 11.27 -7.08 -0.08 -6.82 16 4 C 0.21 2.82 7.58 -12.90 -0.10 2.73 16 5 C -0.01 -0.10 5.13 -27.88 -0.14 -0.24 16 6 C -0.14 -1.86 5.68 -27.88 -0.16 -2.02 16 7 C 0.51 9.22 7.79 -10.99 -0.09 9.14 16 8 O -0.56 -12.00 15.64 5.56 0.09 -11.91 16 9 N -0.70 -13.89 5.07 -54.93 -0.28 -14.17 16 10 C 0.23 5.60 2.14 -69.08 -0.15 5.45 16 11 H 0.05 1.28 6.06 -51.93 -0.31 0.96 16 12 C -0.16 -3.52 9.08 37.16 0.34 -3.19 16 13 C -0.61 -16.51 9.09 -34.44 -0.31 -16.82 16 14 H 0.06 1.74 7.95 -52.48 -0.42 1.33 16 15 C 0.03 0.98 5.42 -17.82 -0.10 0.88 16 16 N -0.90 -27.15 13.70 55.43 0.76 -26.39 16 17 Si 1.05 25.48 25.37 -169.99 -4.31 21.16 16 18 H -0.28 -6.45 6.78 56.52 0.38 -6.06 16 19 H -0.27 -6.43 6.37 56.52 0.36 -6.07 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 O -0.19 -2.56 10.79 4.23 0.05 -2.51 16 22 C -0.03 -0.30 6.79 -36.54 -0.25 -0.55 16 23 C -0.01 -0.10 5.51 -104.98 -0.58 -0.68 16 24 C -0.09 -0.72 8.65 -39.18 -0.34 -1.05 16 25 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 26 C -0.11 -0.65 10.04 -39.50 -0.40 -1.05 16 27 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 28 C -0.10 -0.83 9.79 -39.19 -0.38 -1.21 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.51 7.31 -51.93 -0.38 0.14 16 32 H 0.12 1.56 8.10 -51.93 -0.42 1.14 16 33 H 0.10 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.39 6.92 8.53 -40.82 -0.35 6.57 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 1.14 4.49 -51.93 -0.23 0.91 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.27 7.96 8.72 -40.82 -0.36 7.61 16 41 H 0.13 0.85 7.62 -52.49 -0.40 0.45 16 42 H 0.13 0.50 8.06 -52.48 -0.42 0.07 16 43 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -33.51 379.31 -8.13 -41.63 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.37 Total: 4.92 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.69 Total: -11.64 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.40 Total: -47.37 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.13 Total: -14.42 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -4.31 Total: 21.16 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.51 -8.13 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170944369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.545 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds