Wall clock time and date at job start Tue Mar 31 2020 15:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30171 * 126.80383 * 2 1 4 4 O 1.20922 * 111.60530 * 180.02562 * 3 2 1 5 5 C 1.34036 * 111.56685 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.77573 * 179.97438 * 5 4 3 7 7 C 1.35447 * 106.44654 * 0.02562 * 5 4 3 8 8 C 1.50708 * 128.00650 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47130 * 95.39896 * 8 7 5 10 10 H 1.09002 * 109.47402 * 54.69315 * 9 8 7 11 11 C 1.52997 * 109.47219 * 174.69910 * 9 8 7 12 12 N 1.46500 * 109.46915 * 294.69481 * 9 8 7 13 13 C 1.34774 * 120.00245 * 151.88564 * 12 9 8 14 14 O 1.21553 * 120.00014 * 0.02562 * 13 12 9 15 15 C 1.47891 * 120.00412 * 180.02562 * 13 12 9 16 16 C 1.39915 * 120.02000 * 359.72697 * 15 13 12 17 17 C 1.38333 * 120.35497 * 179.71929 * 16 15 13 18 18 C 1.37751 * 120.40958 * 0.55525 * 17 16 15 19 19 C 1.40747 * 120.04237 * 359.72431 * 18 17 16 20 20 C 1.41435 * 120.17978 * 180.02562 * 19 18 17 21 21 H 1.08007 * 120.00188 * 27.94810 * 20 19 18 22 22 C 1.39933 * 120.00390 * 207.94423 * 20 19 18 23 23 N 1.30829 * 119.99582 * 14.57011 * 22 20 19 24 24 Si 1.86803 * 120.00276 * 194.56875 * 22 20 19 25 25 H 1.48499 * 109.47108 * 90.00474 * 24 22 20 26 26 H 1.48503 * 109.47115 * 210.00062 * 24 22 20 27 27 H 1.48492 * 109.47264 * 330.00044 * 24 22 20 28 28 C 1.38996 * 120.02572 * 180.02562 * 15 13 12 29 29 H 1.09000 * 109.47139 * 269.94332 * 1 2 3 30 30 H 1.08998 * 109.46726 * 29.94441 * 1 2 3 31 31 H 1.08995 * 109.46848 * 149.94477 * 1 2 3 32 32 H 1.08996 * 109.47161 * 356.45170 * 6 5 4 33 33 H 1.09002 * 109.47155 * 116.45723 * 6 5 4 34 34 H 1.09002 * 109.47127 * 236.45015 * 6 5 4 35 35 H 1.09005 * 109.47013 * 215.39729 * 8 7 5 36 36 H 1.08998 * 109.47124 * 335.39614 * 8 7 5 37 37 H 1.09002 * 109.47420 * 59.99416 * 11 9 8 38 38 H 1.08999 * 109.47264 * 179.97438 * 11 9 8 39 39 H 1.09005 * 109.46749 * 299.99571 * 11 9 8 40 40 H 0.96999 * 120.00207 * 331.88576 * 12 9 8 41 41 H 1.08001 * 119.82647 * 359.97324 * 16 15 13 42 42 H 1.07996 * 119.79764 * 180.25335 * 17 16 15 43 43 H 1.08009 * 119.98055 * 179.73915 * 18 17 16 44 44 H 0.97003 * 119.99724 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.20022 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6025 -0.6068 -0.0004 6 6 4.9022 -1.3696 -0.0014 7 6 2.3540 -1.1320 -0.0003 8 6 1.9591 -2.5865 -0.0006 9 6 1.6947 -3.0435 1.4354 10 1 0.9550 -2.3880 1.8950 11 6 1.1671 -4.4796 1.4246 12 7 2.9412 -2.9870 2.2030 13 6 2.9039 -2.7826 3.5347 14 8 1.8360 -2.6455 4.0988 15 6 4.1623 -2.7250 4.3096 16 6 5.3915 -2.8885 3.6616 17 6 6.5730 -2.8302 4.3787 18 6 6.5527 -2.6220 5.7402 19 6 5.3255 -2.4612 6.4102 20 6 5.3013 -2.2467 7.8080 21 1 6.1379 -1.7683 8.2956 22 6 4.1934 -2.6542 8.5594 23 7 3.3174 -3.4757 8.0403 24 14 3.9652 -2.0255 10.3036 25 1 3.1728 -0.7698 10.2774 26 1 3.2477 -3.0469 11.1081 27 1 5.2936 -1.7600 10.9118 28 6 4.1243 -2.5147 5.6830 29 1 -0.3633 -0.0010 1.0277 30 1 -0.3633 0.8905 -0.5130 31 1 -0.3633 -0.8895 -0.5147 32 1 5.7346 -0.6689 -0.0659 33 1 4.9846 -1.9482 0.9187 34 1 4.9273 -2.0435 -0.8577 35 1 1.0553 -2.7174 -0.5958 36 1 2.7655 -3.1818 -0.4288 37 1 1.9068 -5.1351 0.9650 38 1 0.9792 -4.8053 2.4477 39 1 0.2396 -4.5215 0.8534 40 1 3.7934 -3.0968 1.7530 41 1 5.4183 -3.0570 2.5951 42 1 7.5170 -2.9535 3.8687 43 1 7.4792 -2.5818 6.2939 44 1 2.5496 -3.7585 8.5613 45 1 3.1775 -2.3925 6.1879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172477578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:34 Heat of formation + Delta-G solvation = 22.855952 kcal Electronic energy + Delta-G solvation = -28079.800858 eV Core-core repulsion = 24257.531674 eV Total energy + Delta-G solvation = -3822.269185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.89040 -39.44945 -37.34317 -36.36656 -34.48050 -33.73683 -33.38558 -31.54719 -29.70011 -29.44310 -28.82629 -28.36771 -26.68286 -25.33740 -23.27990 -21.97750 -21.08264 -20.54688 -20.22086 -19.58493 -17.84211 -17.57886 -16.99281 -16.14352 -15.87810 -15.09894 -14.83617 -14.65160 -14.29284 -14.14900 -13.87641 -13.52353 -13.45350 -13.30827 -13.11288 -13.02094 -12.82591 -12.70304 -12.50593 -12.44159 -12.24073 -12.05476 -11.71025 -11.62542 -11.19054 -11.11117 -11.10434 -10.92184 -10.70839 -10.50803 -10.01934 -9.82518 -9.70805 -9.25204 -9.13736 -9.00927 -8.67701 -7.65041 -7.51959 -6.78668 -4.43952 1.47864 2.18710 2.19329 2.79852 3.07794 3.10829 3.11766 3.13966 3.62690 3.85679 3.92626 4.14272 4.40520 4.63314 4.70893 4.76404 4.90185 5.12953 5.21928 5.24895 5.37416 5.39370 5.43129 5.53697 5.57217 5.58571 5.62835 5.67335 5.71832 5.78760 5.87396 6.03905 6.08763 6.20907 6.22822 6.29989 6.69289 6.87450 6.97823 6.98836 7.19584 7.35853 7.66145 7.72977 7.89466 8.07728 8.17422 8.30683 8.49025 8.79780 8.81410 8.94601 10.16632 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003403 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.291151 B = 8226.363503 C = 8558.975318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.024 3.976 3 N -0.369 5.369 4 O 0.097 5.903 5 C -0.022 4.022 6 C -0.080 4.080 7 C -0.198 4.198 8 C -0.047 4.047 9 C 0.146 3.854 10 H 0.088 0.912 11 C -0.163 4.163 12 N -0.731 5.731 13 C 0.565 3.435 14 O -0.545 6.545 15 C -0.129 4.129 16 C -0.216 4.216 17 C -0.098 4.098 18 C -0.209 4.209 19 C 0.100 3.900 20 C -0.462 4.462 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.788 5.788 24 Si 0.911 3.089 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.087 4.087 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.394 0.606 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.284 0.716 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -0.218 -16.693 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.032 5.968 5 C -0.085 4.085 6 C -0.137 4.137 7 C -0.202 4.202 8 C -0.085 4.085 9 C 0.041 3.959 10 H 0.107 0.893 11 C -0.221 4.221 12 N -0.385 5.385 13 C 0.356 3.644 14 O -0.423 6.423 15 C -0.132 4.132 16 C -0.236 4.236 17 C -0.116 4.116 18 C -0.229 4.229 19 C 0.098 3.902 20 C -0.492 4.492 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.413 5.413 24 Si 0.736 3.264 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.186 1.186 28 C -0.107 4.107 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.230 0.770 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.268 1.069 -16.220 16.581 hybrid contribution 0.219 -0.669 0.596 0.923 sum -3.049 0.400 -15.624 15.924 Atomic orbital electron populations 1.20162 0.86178 1.03366 1.03607 1.23396 0.98825 0.88569 1.02747 1.73811 0.89318 1.24012 1.20355 1.84791 1.21589 1.22570 1.67833 1.24186 0.98122 0.83794 1.02420 1.20460 0.90409 0.98909 1.03956 1.20795 0.91676 0.97275 1.10461 1.20234 1.02727 0.88680 0.96897 1.20839 0.88043 0.97052 0.89998 0.89348 1.22191 1.00705 0.96132 1.03087 1.46069 1.08526 1.75801 1.08134 1.18843 0.89940 0.74530 0.81136 1.90691 1.31786 1.49912 1.69888 1.19488 0.90928 1.08034 0.94792 1.20309 0.92165 1.14332 0.96835 1.20430 0.95912 1.00861 0.94443 1.21140 0.97314 1.10466 0.93943 1.17605 0.90499 0.88669 0.93438 1.19591 1.02707 1.34747 0.92107 0.90100 1.25940 0.94721 0.92940 1.00960 1.69775 1.10151 1.22833 1.38535 0.86259 0.79487 0.79490 0.81213 1.19194 1.20213 1.18587 1.21619 0.99803 0.98929 0.90375 0.89986 0.90739 0.90146 0.89540 0.89029 0.89166 0.89190 0.90145 0.92461 0.91564 0.91939 0.76992 0.89469 0.88850 0.88577 0.90513 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 36.01 0.37 -0.40 16 2 C 0.02 0.32 7.33 -82.10 -0.60 -0.28 16 3 N -0.37 -5.70 12.07 33.42 0.40 -5.30 16 4 O 0.10 1.42 11.20 17.19 0.19 1.61 16 5 C -0.02 -0.27 7.49 -35.31 -0.26 -0.53 16 6 C -0.08 -0.71 10.07 36.00 0.36 -0.34 16 7 C -0.20 -2.41 5.31 -104.42 -0.55 -2.97 16 8 C -0.05 -0.46 5.13 -27.88 -0.14 -0.60 16 9 C 0.15 1.89 2.60 -67.93 -0.18 1.72 16 10 H 0.09 1.37 7.48 -51.93 -0.39 0.98 16 11 C -0.16 -1.88 9.51 37.16 0.35 -1.53 16 12 N -0.73 -11.42 4.72 -54.74 -0.26 -11.68 16 13 C 0.56 12.07 7.77 -12.31 -0.10 11.97 16 14 O -0.54 -13.49 15.94 5.32 0.08 -13.40 16 15 C -0.13 -2.99 5.87 -105.04 -0.62 -3.60 16 16 C -0.22 -4.33 9.55 -38.92 -0.37 -4.70 16 17 C -0.10 -2.01 10.01 -39.72 -0.40 -2.41 16 18 C -0.21 -4.87 9.78 -38.81 -0.38 -5.25 16 19 C 0.10 2.63 5.54 -106.87 -0.59 2.04 16 20 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 21 H 0.08 2.02 7.89 -52.48 -0.41 1.61 16 22 C 0.07 1.85 5.18 -17.34 -0.09 1.76 16 23 N -0.79 -20.93 11.00 55.55 0.61 -20.32 16 24 Si 0.91 18.92 29.58 -169.99 -5.03 13.89 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 28 C -0.09 -2.31 8.21 -38.44 -0.32 -2.62 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.62 7.82 -51.93 -0.41 0.22 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.89 5.03 -51.93 -0.26 0.63 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.69 7.82 -51.93 -0.41 0.28 16 36 H 0.08 0.63 7.96 -51.93 -0.41 0.22 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.39 5.25 4.70 -40.82 -0.19 5.06 16 41 H 0.09 1.38 5.28 -52.49 -0.28 1.10 16 42 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 44 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 45 H 0.13 3.81 5.88 -52.49 -0.31 3.50 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -31.88 375.88 -8.19 -40.06 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.01 Total: 9.71 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -3.85 Total: -20.24 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.76 Total: -37.30 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.28 Total: -11.79 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.88 -8.19 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172477578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.919 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds