Wall clock time and date at job start Tue Mar 31 2020 15:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30171 * 126.80383 * 2 1 4 4 O 1.20922 * 111.60530 * 180.02562 * 3 2 1 5 5 C 1.34036 * 111.56685 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.77573 * 179.97438 * 5 4 3 7 7 C 1.35447 * 106.44654 * 0.02562 * 5 4 3 8 8 C 1.50708 * 128.00650 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47130 * 95.39896 * 8 7 5 10 10 H 1.09002 * 109.47402 * 54.69315 * 9 8 7 11 11 C 1.52997 * 109.47219 * 174.69910 * 9 8 7 12 12 N 1.46500 * 109.46915 * 294.69481 * 9 8 7 13 13 C 1.34774 * 120.00245 * 151.88564 * 12 9 8 14 14 O 1.21553 * 120.00014 * 0.02562 * 13 12 9 15 15 C 1.47891 * 120.00412 * 180.02562 * 13 12 9 16 16 C 1.39915 * 120.02000 * 359.72697 * 15 13 12 17 17 C 1.38333 * 120.35497 * 179.71929 * 16 15 13 18 18 C 1.37751 * 120.40958 * 0.55525 * 17 16 15 19 19 C 1.40747 * 120.04237 * 359.72431 * 18 17 16 20 20 C 1.41435 * 120.17978 * 180.02562 * 19 18 17 21 21 H 1.08007 * 120.00188 * 27.94810 * 20 19 18 22 22 C 1.39933 * 120.00390 * 207.94423 * 20 19 18 23 23 N 1.30829 * 119.99582 * 14.57011 * 22 20 19 24 24 Si 1.86803 * 120.00276 * 194.56875 * 22 20 19 25 25 H 1.48499 * 109.47108 * 90.00474 * 24 22 20 26 26 H 1.48503 * 109.47115 * 210.00062 * 24 22 20 27 27 H 1.48492 * 109.47264 * 330.00044 * 24 22 20 28 28 C 1.38996 * 120.02572 * 180.02562 * 15 13 12 29 29 H 1.09000 * 109.47139 * 269.94332 * 1 2 3 30 30 H 1.08998 * 109.46726 * 29.94441 * 1 2 3 31 31 H 1.08995 * 109.46848 * 149.94477 * 1 2 3 32 32 H 1.08996 * 109.47161 * 356.45170 * 6 5 4 33 33 H 1.09002 * 109.47155 * 116.45723 * 6 5 4 34 34 H 1.09002 * 109.47127 * 236.45015 * 6 5 4 35 35 H 1.09005 * 109.47013 * 215.39729 * 8 7 5 36 36 H 1.08998 * 109.47124 * 335.39614 * 8 7 5 37 37 H 1.09002 * 109.47420 * 59.99416 * 11 9 8 38 38 H 1.08999 * 109.47264 * 179.97438 * 11 9 8 39 39 H 1.09005 * 109.46749 * 299.99571 * 11 9 8 40 40 H 0.96999 * 120.00207 * 331.88576 * 12 9 8 41 41 H 1.08001 * 119.82647 * 359.97324 * 16 15 13 42 42 H 1.07996 * 119.79764 * 180.25335 * 17 16 15 43 43 H 1.08009 * 119.98055 * 179.73915 * 18 17 16 44 44 H 0.97003 * 119.99724 * 179.97438 * 23 22 20 45 45 H 1.08002 * 120.20022 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6025 -0.6068 -0.0004 6 6 4.9022 -1.3696 -0.0014 7 6 2.3540 -1.1320 -0.0003 8 6 1.9591 -2.5865 -0.0006 9 6 1.6947 -3.0435 1.4354 10 1 0.9550 -2.3880 1.8950 11 6 1.1671 -4.4796 1.4246 12 7 2.9412 -2.9870 2.2030 13 6 2.9039 -2.7826 3.5347 14 8 1.8360 -2.6455 4.0988 15 6 4.1623 -2.7250 4.3096 16 6 5.3915 -2.8885 3.6616 17 6 6.5730 -2.8302 4.3787 18 6 6.5527 -2.6220 5.7402 19 6 5.3255 -2.4612 6.4102 20 6 5.3013 -2.2467 7.8080 21 1 6.1379 -1.7683 8.2956 22 6 4.1934 -2.6542 8.5594 23 7 3.3174 -3.4757 8.0403 24 14 3.9652 -2.0255 10.3036 25 1 3.1728 -0.7698 10.2774 26 1 3.2477 -3.0469 11.1081 27 1 5.2936 -1.7600 10.9118 28 6 4.1243 -2.5147 5.6830 29 1 -0.3633 -0.0010 1.0277 30 1 -0.3633 0.8905 -0.5130 31 1 -0.3633 -0.8895 -0.5147 32 1 5.7346 -0.6689 -0.0659 33 1 4.9846 -1.9482 0.9187 34 1 4.9273 -2.0435 -0.8577 35 1 1.0553 -2.7174 -0.5958 36 1 2.7655 -3.1818 -0.4288 37 1 1.9068 -5.1351 0.9650 38 1 0.9792 -4.8053 2.4477 39 1 0.2396 -4.5215 0.8534 40 1 3.7934 -3.0968 1.7530 41 1 5.4183 -3.0570 2.5951 42 1 7.5170 -2.9535 3.8687 43 1 7.4792 -2.5818 6.2939 44 1 2.5496 -3.7585 8.5613 45 1 3.1775 -2.3925 6.1879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172477578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:33 Heat of formation + Delta-G solvation = 3.863345 kcal Electronic energy + Delta-G solvation = -28080.624440 eV Core-core repulsion = 24257.531674 eV Total energy + Delta-G solvation = -3823.092766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.88231 -41.01904 -38.97947 -37.68373 -35.67890 -35.48199 -34.32754 -32.98294 -31.38100 -31.14933 -29.70377 -29.23876 -27.53098 -27.20834 -24.81081 -23.13950 -22.79220 -21.75370 -21.34236 -20.99297 -19.53331 -18.66553 -18.11613 -17.71028 -17.30869 -16.77256 -16.43029 -15.95051 -15.54759 -15.35672 -15.23472 -14.93598 -14.48988 -14.39541 -14.30339 -14.26062 -14.14624 -13.80897 -13.53270 -13.44468 -13.34769 -13.11853 -12.97781 -12.92064 -12.82492 -12.59987 -12.52021 -12.19666 -12.06904 -11.90311 -11.77347 -11.49018 -11.11224 -10.82775 -10.73412 -10.20540 -9.93506 -9.44589 -9.35650 -8.64852 -6.40088 0.39376 0.53673 1.01139 1.23524 1.34480 1.45965 1.48555 2.12681 2.18924 2.24002 2.30409 2.80384 3.26261 3.55943 3.69415 3.83168 3.86827 3.98920 4.12126 4.31531 4.35097 4.40525 4.45443 4.54118 4.59702 4.66710 4.71658 4.74296 4.84262 4.88021 4.89858 4.90056 4.94329 5.08230 5.11740 5.17025 5.19867 5.31027 5.33420 5.36894 5.52419 5.61601 5.86589 5.92182 6.05320 6.29853 6.52769 6.71245 6.88642 6.94926 7.33990 7.36269 8.32330 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003403 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.291151 B = 8226.363503 C = 8558.975318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.010 3.990 3 N -0.407 5.407 4 O 0.074 5.926 5 C -0.026 4.026 6 C -0.081 4.081 7 C -0.209 4.209 8 C -0.036 4.036 9 C 0.142 3.858 10 H 0.057 0.943 11 C -0.157 4.157 12 N -0.705 5.705 13 C 0.560 3.440 14 O -0.592 6.592 15 C -0.142 4.142 16 C -0.190 4.190 17 C -0.095 4.095 18 C -0.213 4.213 19 C 0.068 3.932 20 C -0.502 4.502 21 H 0.082 0.918 22 C 0.029 3.971 23 N -0.831 5.831 24 Si 0.981 3.019 25 H -0.269 1.269 26 H -0.269 1.269 27 H -0.250 1.250 28 C -0.128 4.128 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.026 0.974 39 H 0.092 0.908 40 H 0.408 0.592 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.108 0.892 44 H 0.284 0.716 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.481 -1.567 -19.960 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.148 4.148 3 N -0.117 5.117 4 O 0.013 5.987 5 C -0.090 4.090 6 C -0.138 4.138 7 C -0.213 4.213 8 C -0.073 4.073 9 C 0.038 3.962 10 H 0.076 0.924 11 C -0.215 4.215 12 N -0.359 5.359 13 C 0.349 3.651 14 O -0.473 6.473 15 C -0.145 4.145 16 C -0.210 4.210 17 C -0.113 4.113 18 C -0.233 4.233 19 C 0.065 3.935 20 C -0.532 4.532 21 H 0.100 0.900 22 C -0.185 4.185 23 N -0.458 5.458 24 Si 0.802 3.198 25 H -0.194 1.194 26 H -0.193 1.193 27 H -0.173 1.173 28 C -0.149 4.149 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.111 0.889 40 H 0.247 0.753 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.647 -0.294 -19.550 19.622 hybrid contribution -0.201 -0.257 1.356 1.395 sum -1.848 -0.551 -18.194 18.296 Atomic orbital electron populations 1.20289 0.84528 1.05126 1.03426 1.24035 1.00220 0.88894 1.01673 1.73804 0.89961 1.25507 1.22442 1.84738 1.21435 1.24081 1.68435 1.24960 0.99798 0.83109 1.01101 1.20692 0.88828 0.99213 1.05094 1.21147 0.91370 0.98188 1.10560 1.20298 1.05444 0.87160 0.94448 1.21063 0.86012 0.97754 0.91415 0.92442 1.22145 1.02920 0.95008 1.01452 1.45890 1.10557 1.73339 1.06120 1.18744 0.88676 0.74716 0.82931 1.90668 1.33100 1.52261 1.71298 1.19843 0.93317 1.07311 0.94053 1.20880 0.90509 1.10230 0.99334 1.20959 0.98192 0.98758 0.93342 1.21465 0.96591 1.09582 0.95681 1.17935 0.91645 0.89883 0.93997 1.19861 1.03791 1.36630 0.92921 0.89969 1.26800 0.94067 0.92580 1.05056 1.69884 1.10978 1.24668 1.40221 0.85217 0.79761 0.78655 0.76194 1.19398 1.19336 1.17313 1.21398 0.98516 1.02751 0.92233 0.91004 0.90223 0.87216 0.88620 0.89502 0.85534 0.86210 0.86843 0.90106 0.95442 0.88888 0.75261 0.84150 0.83844 0.87389 0.90516 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.39 71.24 0.74 -0.74 16 2 C 0.01 0.27 7.33 43.58 0.32 0.59 16 3 N -0.41 -12.62 12.07 -49.56 -0.60 -13.22 16 4 O 0.07 2.14 11.20 71.67 0.80 2.94 16 5 C -0.03 -0.58 7.49 25.04 0.19 -0.39 16 6 C -0.08 -1.06 10.07 71.24 0.72 -0.35 16 7 C -0.21 -4.53 5.31 -19.73 -0.10 -4.63 16 8 C -0.04 -0.53 5.13 29.85 0.15 -0.38 16 9 C 0.14 3.35 2.60 44.99 0.12 3.46 16 10 H 0.06 1.76 7.48 -2.39 -0.02 1.74 16 11 C -0.16 -3.20 9.51 71.98 0.68 -2.52 16 12 N -0.71 -20.51 4.72 -445.37 -2.10 -22.62 16 13 C 0.56 24.16 7.77 86.80 0.67 24.83 16 14 O -0.59 -30.94 15.94 -3.88 -0.06 -31.00 16 15 C -0.14 -6.60 5.87 -20.13 -0.12 -6.72 16 16 C -0.19 -6.99 9.55 22.70 0.22 -6.77 16 17 C -0.09 -3.54 10.01 22.18 0.22 -3.32 16 18 C -0.21 -9.80 9.78 22.77 0.22 -9.57 16 19 C 0.07 3.68 5.54 -21.32 -0.12 3.57 16 20 C -0.50 -27.77 9.05 23.47 0.21 -27.55 16 21 H 0.08 4.30 7.89 -2.91 -0.02 4.27 16 22 C 0.03 1.54 5.18 85.25 0.44 1.99 16 23 N -0.83 -47.28 11.00 21.82 0.24 -47.04 16 24 Si 0.98 40.64 29.58 68.60 2.03 42.67 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 27 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 28 C -0.13 -7.18 8.21 23.01 0.19 -6.99 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.11 1.41 7.82 -2.39 -0.02 1.39 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.22 5.03 -2.39 -0.01 1.21 16 34 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.12 1.17 7.82 -2.38 -0.02 1.15 16 36 H 0.11 1.02 7.96 -2.39 -0.02 1.00 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.41 9.13 4.70 -92.71 -0.44 8.69 16 41 H 0.14 3.60 5.28 -2.91 -0.02 3.58 16 42 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 44 H 0.28 14.96 8.30 -92.71 -0.77 14.19 16 45 H 0.09 5.80 5.88 -2.91 -0.02 5.78 16 Total: -1.00 -79.09 375.88 5.66 -73.43 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.59 Total: 30.34 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 4.76 Total: -35.51 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.46 Total: -82.88 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: 0.74 Total: -28.06 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -79.09 5.66 -73.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172477578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.294 kcal (2) G-P(sol) polarization free energy of solvation -79.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds