Wall clock time and date at job start Tue Mar 31 2020 15:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30174 * 126.80067 * 2 1 4 4 O 1.20931 * 111.60776 * 180.02562 * 3 2 1 5 5 C 1.34042 * 111.56194 * 359.75789 * 4 3 2 6 6 C 1.50699 * 126.77812 * 180.28499 * 5 4 3 7 7 C 1.35455 * 106.44659 * 0.38518 * 5 4 3 8 8 C 1.50701 * 128.00605 * 179.91274 * 7 5 4 9 9 C 1.53001 * 109.47060 * 269.67369 * 8 7 5 10 10 H 1.09003 * 109.47122 * 305.00157 * 9 8 7 11 11 C 1.52999 * 109.46877 * 185.00084 * 9 8 7 12 12 N 1.46492 * 109.47032 * 65.00250 * 9 8 7 13 13 C 1.34784 * 120.00160 * 205.00365 * 12 9 8 14 14 O 1.21552 * 119.99281 * 359.97438 * 13 12 9 15 15 C 1.47885 * 120.00077 * 180.02562 * 13 12 9 16 16 C 1.39915 * 120.02676 * 0.28816 * 15 13 12 17 17 C 1.38327 * 120.35866 * 180.26063 * 16 15 13 18 18 C 1.37755 * 120.40723 * 359.44526 * 17 16 15 19 19 C 1.40748 * 120.04267 * 0.27538 * 18 17 16 20 20 C 1.41444 * 120.17540 * 179.97438 * 19 18 17 21 21 H 1.07993 * 119.99941 * 24.47054 * 20 19 18 22 22 C 1.39938 * 119.99470 * 204.47107 * 20 19 18 23 23 N 1.30822 * 120.00340 * 17.89734 * 22 20 19 24 24 Si 1.86801 * 119.99624 * 197.89749 * 22 20 19 25 25 H 1.48497 * 109.47536 * 94.69198 * 24 22 20 26 26 H 1.48499 * 109.47164 * 214.69311 * 24 22 20 27 27 H 1.48505 * 109.47200 * 334.68896 * 24 22 20 28 28 C 1.38996 * 120.01991 * 179.97438 * 15 13 12 29 29 H 1.08995 * 109.47510 * 269.98053 * 1 2 3 30 30 H 1.09010 * 109.46929 * 29.98366 * 1 2 3 31 31 H 1.09001 * 109.47099 * 149.97477 * 1 2 3 32 32 H 1.08999 * 109.47478 * 270.11838 * 6 5 4 33 33 H 1.08997 * 109.46652 * 30.11846 * 6 5 4 34 34 H 1.09005 * 109.47280 * 150.11204 * 6 5 4 35 35 H 1.09004 * 109.47191 * 149.67614 * 8 7 5 36 36 H 1.09002 * 109.47422 * 29.67761 * 8 7 5 37 37 H 1.08995 * 109.47600 * 299.99968 * 11 9 8 38 38 H 1.09002 * 109.47176 * 60.00456 * 11 9 8 39 39 H 1.09003 * 109.46972 * 179.97438 * 11 9 8 40 40 H 0.96997 * 120.00474 * 24.99392 * 12 9 8 41 41 H 1.08005 * 119.82118 * 359.97438 * 16 15 13 42 42 H 1.07994 * 119.79594 * 179.72354 * 17 16 15 43 43 H 1.08010 * 119.97515 * 180.25654 * 18 17 16 44 44 H 0.96998 * 120.00145 * 180.02562 * 23 22 20 45 45 H 1.07995 * 120.20724 * 0.04632 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0044 6 6 4.9022 -1.3695 0.0114 7 6 2.3539 -1.1320 -0.0005 8 6 1.9591 -2.5864 0.0000 9 6 1.8242 -3.0788 -1.4423 10 1 1.1252 -2.4388 -1.9808 11 6 1.3033 -4.5174 -1.4434 12 7 3.1332 -3.0329 -2.0983 13 6 3.2115 -2.9232 -3.4394 14 8 2.1958 -2.8627 -4.1044 15 6 4.5329 -2.8774 -4.1017 16 6 5.7023 -2.9541 -3.3373 17 6 6.9419 -2.9065 -3.9492 18 6 7.0396 -2.7947 -5.3187 19 6 5.8744 -2.7221 -6.1047 20 6 5.9714 -2.6066 -7.5111 21 1 6.8552 -2.9590 -8.0220 22 6 4.9223 -2.0358 -8.2402 23 7 4.0258 -1.3026 -7.6318 24 14 4.8019 -2.3207 -10.0824 25 1 3.8990 -3.4693 -10.3478 26 1 4.2596 -1.1032 -10.7372 27 1 6.1517 -2.6160 -10.6269 28 6 4.6141 -2.7648 -5.4847 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 5.2202 -1.5549 -1.0146 33 1 5.6636 -0.7850 0.5278 34 1 4.7628 -2.3202 0.5261 35 1 1.0054 -2.7037 0.5147 36 1 2.7232 -3.1702 0.5134 37 1 2.0022 -5.1573 -0.9049 38 1 0.3293 -4.5515 -0.9552 39 1 1.2068 -4.8680 -2.4709 40 1 3.9437 -3.0813 -1.5677 41 1 5.6367 -3.0462 -2.2632 42 1 7.8386 -2.9620 -3.3499 43 1 8.0112 -2.7623 -5.7895 44 1 3.2984 -0.9072 -8.1371 45 1 3.7141 -2.7096 -6.0791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172477583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:36 Heat of formation + Delta-G solvation = 3.261384 kcal Electronic energy + Delta-G solvation = -28137.093282 eV Core-core repulsion = 24313.974413 eV Total energy + Delta-G solvation = -3823.118869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.88430 -41.01998 -38.97505 -37.69866 -35.69665 -35.49994 -34.31210 -33.00493 -31.38139 -31.14016 -29.69968 -29.23822 -27.56254 -27.21228 -24.80266 -23.13565 -22.79114 -21.77800 -21.31232 -20.97814 -19.53251 -18.67594 -18.13018 -17.70994 -17.31585 -16.77018 -16.43840 -15.97725 -15.54574 -15.35105 -15.24764 -14.95282 -14.48062 -14.34985 -14.29356 -14.26858 -14.13178 -13.85090 -13.56363 -13.45596 -13.31723 -13.09102 -12.98154 -12.93844 -12.82620 -12.61050 -12.49867 -12.21254 -12.05288 -11.90375 -11.79385 -11.48789 -11.09585 -10.82255 -10.71926 -10.19372 -9.95753 -9.45961 -9.36784 -8.67730 -6.39058 0.40424 0.52592 1.01361 1.23026 1.34380 1.46682 1.49206 2.13003 2.17954 2.24462 2.29691 2.79048 3.25729 3.54089 3.70947 3.81181 3.86558 4.00117 4.11765 4.31263 4.35189 4.40470 4.44881 4.54803 4.62924 4.66002 4.68637 4.74054 4.83644 4.87372 4.88763 4.91559 4.92185 5.07856 5.11173 5.15970 5.21506 5.31542 5.33557 5.36638 5.52549 5.61415 5.87486 5.93522 6.06259 6.30148 6.52744 6.71862 6.87785 6.95628 7.32733 7.36738 8.28806 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.003440 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.863493 B = 8138.191323 C = 8383.825639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.011 3.989 3 N -0.407 5.407 4 O 0.072 5.928 5 C -0.026 4.026 6 C -0.089 4.089 7 C -0.210 4.210 8 C -0.036 4.036 9 C 0.142 3.858 10 H 0.054 0.946 11 C -0.156 4.156 12 N -0.706 5.706 13 C 0.559 3.441 14 O -0.591 6.591 15 C -0.140 4.140 16 C -0.195 4.195 17 C -0.093 4.093 18 C -0.217 4.217 19 C 0.067 3.933 20 C -0.499 4.499 21 H 0.084 0.916 22 C 0.030 3.970 23 N -0.828 5.828 24 Si 0.981 3.019 25 H -0.267 1.267 26 H -0.270 1.270 27 H -0.249 1.249 28 C -0.134 4.134 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.028 0.972 40 H 0.409 0.591 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.107 0.893 44 H 0.285 0.715 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 -4.590 19.188 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.147 4.147 3 N -0.118 5.118 4 O 0.011 5.989 5 C -0.090 4.090 6 C -0.146 4.146 7 C -0.214 4.214 8 C -0.074 4.074 9 C 0.038 3.962 10 H 0.072 0.928 11 C -0.215 4.215 12 N -0.360 5.360 13 C 0.349 3.651 14 O -0.473 6.473 15 C -0.143 4.143 16 C -0.215 4.215 17 C -0.111 4.111 18 C -0.237 4.237 19 C 0.065 3.935 20 C -0.528 4.528 21 H 0.102 0.898 22 C -0.185 4.185 23 N -0.454 5.454 24 Si 0.802 3.198 25 H -0.191 1.191 26 H -0.195 1.195 27 H -0.172 1.172 28 C -0.155 4.155 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.047 0.953 40 H 0.248 0.752 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.525 -3.068 18.722 19.296 hybrid contribution -0.073 -0.184 -1.317 1.331 sum -3.598 -3.252 17.405 18.068 Atomic orbital electron populations 1.20302 0.84297 1.04134 1.04634 1.24075 1.00317 0.88795 1.01544 1.73811 0.89926 1.25558 1.22461 1.84740 1.21504 1.24094 1.68568 1.24935 0.99804 0.83150 1.01065 1.20780 0.89176 0.99933 1.04728 1.21167 0.91292 0.98284 1.10612 1.20311 1.05770 0.86901 0.94378 1.21059 0.84414 0.97748 0.93014 0.92767 1.22137 1.02985 0.94811 1.01525 1.45888 1.10081 1.74609 1.05407 1.18754 0.88858 0.74571 0.82922 1.90668 1.38561 1.52230 1.65812 1.19834 0.92900 1.07305 0.94294 1.20871 0.90848 1.10985 0.98765 1.20949 0.97577 0.98639 0.93899 1.21420 0.96855 1.10885 0.94561 1.17940 0.91538 0.89814 0.94193 1.19893 1.03707 1.36755 0.92484 0.89796 1.26846 0.93735 0.91756 1.06150 1.69905 1.11999 1.22890 1.40617 0.85205 0.80050 0.78693 0.75887 1.19147 1.19527 1.17168 1.21435 0.98043 1.02872 0.93135 0.87829 0.91435 0.88809 0.89694 0.87833 0.85622 0.86144 0.86758 0.90034 0.88939 0.95254 0.75243 0.84145 0.83906 0.87458 0.90491 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.39 71.23 0.74 -0.72 16 2 C 0.01 0.30 7.33 43.58 0.32 0.62 16 3 N -0.41 -12.95 12.07 -49.54 -0.60 -13.55 16 4 O 0.07 2.16 11.20 71.60 0.80 2.96 16 5 C -0.03 -0.61 7.48 25.04 0.19 -0.43 16 6 C -0.09 -1.31 9.06 71.24 0.65 -0.67 16 7 C -0.21 -4.68 5.30 -19.73 -0.10 -4.79 16 8 C -0.04 -0.54 5.08 29.85 0.15 -0.39 16 9 C 0.14 3.36 2.56 44.99 0.12 3.47 16 10 H 0.05 1.68 7.58 -2.39 -0.02 1.66 16 11 C -0.16 -3.13 9.48 71.98 0.68 -2.44 16 12 N -0.71 -20.55 4.74 -445.37 -2.11 -22.66 16 13 C 0.56 24.10 7.74 86.80 0.67 24.77 16 14 O -0.59 -30.82 16.00 -3.88 -0.06 -30.89 16 15 C -0.14 -6.50 5.87 -20.13 -0.12 -6.61 16 16 C -0.20 -7.15 9.42 22.70 0.21 -6.94 16 17 C -0.09 -3.46 10.01 22.18 0.22 -3.24 16 18 C -0.22 -9.95 9.78 22.77 0.22 -9.73 16 19 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16 20 C -0.50 -27.43 9.05 23.47 0.21 -27.22 16 21 H 0.08 4.35 7.91 -2.91 -0.02 4.32 16 22 C 0.03 1.58 5.14 85.25 0.44 2.02 16 23 N -0.83 -47.44 10.96 21.82 0.24 -47.20 16 24 Si 0.98 40.39 29.60 68.60 2.03 42.42 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 26 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 27 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 28 C -0.13 -7.49 8.24 23.01 0.19 -7.30 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.51 5.86 -2.39 -0.01 1.50 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.13 0.93 7.44 -2.38 -0.02 0.91 16 35 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.11 1.04 7.44 -2.39 -0.02 1.02 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.41 9.17 4.54 -92.71 -0.42 8.75 16 41 H 0.14 3.59 4.99 -2.91 -0.01 3.58 16 42 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 44 H 0.28 15.11 8.30 -92.71 -0.77 14.34 16 45 H 0.09 5.93 5.74 -2.91 -0.02 5.91 16 Total: -1.00 -79.13 374.43 5.58 -73.55 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.61 Total: 31.43 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 4.67 Total: -36.05 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.47 Total: -83.41 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: 0.74 Total: -27.93 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -79.13 5.58 -73.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172477583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.811 kcal (2) G-P(sol) polarization free energy of solvation -79.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds