Wall clock time and date at job start Tue Mar 31 2020 15:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30178 * 126.80229 * 2 1 4 4 O 1.20921 * 111.60769 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56374 * 359.76521 * 4 3 2 6 6 C 1.50700 * 126.77644 * 180.28612 * 5 4 3 7 7 C 1.35450 * 106.45131 * 0.37857 * 5 4 3 8 8 C 1.50697 * 128.01254 * 179.91366 * 7 5 4 9 9 H 1.09004 * 109.46917 * 3.80778 * 8 7 5 10 10 C 1.53006 * 109.46814 * 243.81414 * 8 7 5 11 11 C 1.52992 * 109.47457 * 123.81441 * 8 7 5 12 12 N 1.46499 * 109.47199 * 185.00036 * 11 8 7 13 13 C 1.34781 * 119.99739 * 179.97438 * 12 11 8 14 14 O 1.21544 * 120.00521 * 0.02562 * 13 12 11 15 15 C 1.47891 * 119.99692 * 179.97438 * 13 12 11 16 16 C 1.39921 * 120.02418 * 359.73129 * 15 13 12 17 17 C 1.38335 * 120.35706 * 180.29310 * 16 15 13 18 18 C 1.37754 * 120.41049 * 359.95949 * 17 16 15 19 19 C 1.40750 * 120.03868 * 0.03925 * 18 17 16 20 20 C 1.41445 * 120.17354 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99678 * 149.25845 * 20 19 18 22 22 C 1.39929 * 119.99857 * 329.25742 * 20 19 18 23 23 N 1.30836 * 119.99858 * 166.76544 * 22 20 19 24 24 Si 1.86800 * 120.00291 * 346.76482 * 22 20 19 25 25 H 1.48503 * 109.46931 * 88.89722 * 24 22 20 26 26 H 1.48506 * 109.46969 * 208.89469 * 24 22 20 27 27 H 1.48493 * 109.47096 * 328.89699 * 24 22 20 28 28 C 1.38989 * 120.02595 * 180.02562 * 15 13 12 29 29 H 1.08998 * 109.47434 * 274.31736 * 1 2 3 30 30 H 1.09003 * 109.47226 * 34.32041 * 1 2 3 31 31 H 1.08999 * 109.46603 * 154.31857 * 1 2 3 32 32 H 1.08995 * 109.47303 * 274.53643 * 6 5 4 33 33 H 1.08998 * 109.47033 * 34.54018 * 6 5 4 34 34 H 1.09005 * 109.47136 * 154.53982 * 6 5 4 35 35 H 1.08994 * 109.47243 * 54.10501 * 10 8 7 36 36 H 1.09000 * 109.46541 * 174.10531 * 10 8 7 37 37 H 1.08996 * 109.46791 * 294.10359 * 10 8 7 38 38 H 1.09007 * 109.47330 * 64.99641 * 11 8 7 39 39 H 1.09008 * 109.46987 * 304.99964 * 11 8 7 40 40 H 0.96994 * 120.00114 * 0.02562 * 12 11 8 41 41 H 1.07994 * 119.82226 * 0.24826 * 16 15 13 42 42 H 1.08000 * 119.79163 * 179.97438 * 17 16 15 43 43 H 1.07995 * 119.97548 * 180.02562 * 18 17 16 44 44 H 0.96996 * 120.00026 * 180.02562 * 23 22 20 45 45 H 1.08006 * 120.20247 * 359.70680 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 0.0005 5 6 3.6025 -0.6067 0.0060 6 6 4.9022 -1.3694 0.0143 7 6 2.3540 -1.1320 0.0005 8 6 1.9591 -2.5864 0.0015 9 1 2.8532 -3.2055 0.0758 10 6 1.2180 -2.9144 -1.2962 11 6 1.0445 -2.8657 1.1957 12 7 0.7572 -4.3006 1.2656 13 6 -0.0338 -4.7825 2.2448 14 8 -0.5090 -4.0267 3.0695 15 6 -0.3243 -6.2309 2.3150 16 6 0.2171 -7.1005 1.3619 17 6 -0.0550 -8.4557 1.4175 18 6 -0.8611 -8.9648 2.4118 19 6 -1.4147 -8.1054 3.3793 20 6 -2.2423 -8.6252 4.4018 21 1 -2.2667 -8.1492 5.3709 22 6 -3.0295 -9.7560 4.1575 23 7 -3.5903 -10.3904 5.1549 24 14 -3.2797 -10.3597 2.4076 25 1 -2.1980 -11.3137 2.0537 26 1 -4.5949 -11.0414 2.3024 27 1 -3.2451 -9.2042 1.4756 28 6 -1.1403 -6.7284 3.3242 29 1 -0.3634 0.0774 1.0247 30 1 -0.3634 0.8488 -0.5794 31 1 -0.3632 -0.9262 -0.4454 32 1 5.2610 -1.4870 -1.0081 33 1 5.6415 -0.8211 0.5981 34 1 4.7440 -2.3520 0.4591 35 1 1.8291 -2.6178 -2.1486 36 1 1.0246 -3.9861 -1.3432 37 1 0.2723 -2.3731 -1.3213 38 1 0.1121 -2.3138 1.0763 39 1 1.5391 -2.5490 2.1141 40 1 1.1367 -4.9038 0.6077 41 1 0.8503 -6.7116 0.5783 42 1 0.3674 -9.1187 0.6769 43 1 -1.0686 -10.0240 2.4488 44 1 -4.1357 -11.1745 4.9857 45 1 -1.5604 -6.0608 4.0620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178871891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:40 Heat of formation + Delta-G solvation = 26.288219 kcal Electronic energy + Delta-G solvation = -26968.088134 eV Core-core repulsion = 23145.967783 eV Total energy + Delta-G solvation = -3822.120350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.17659 -39.61036 -37.72962 -36.98070 -34.49135 -33.87888 -33.66417 -31.90099 -30.56758 -30.04863 -29.01297 -27.92600 -26.79795 -25.19729 -23.96381 -22.56515 -20.93014 -20.63744 -20.51983 -19.96500 -18.06038 -17.87288 -16.92723 -16.43027 -16.07661 -15.66783 -15.34400 -14.72023 -14.62842 -14.50214 -13.89849 -13.79640 -13.72027 -13.58588 -13.43439 -13.25989 -13.06226 -12.93287 -12.78626 -12.75171 -12.65811 -12.11913 -11.88002 -11.74342 -11.63748 -11.54566 -11.10760 -10.85172 -10.78579 -10.57023 -10.05788 -9.99700 -9.75958 -9.52375 -9.38785 -9.15016 -8.89951 -7.91645 -7.80333 -7.00825 -4.59434 1.19165 1.86013 1.93953 2.47429 2.82744 3.02195 3.15016 3.21611 3.41873 3.57842 3.89748 3.94274 4.16242 4.31686 4.46746 4.57395 4.70905 4.84080 4.91695 5.02005 5.03461 5.22288 5.26130 5.29479 5.33409 5.35019 5.46805 5.49399 5.59477 5.66193 5.68539 5.79617 5.81254 5.89344 5.96608 6.07566 6.33171 6.58099 6.61349 6.65834 6.94316 7.16878 7.35072 7.44110 7.70208 7.74235 7.95875 8.04841 8.25285 8.48540 8.64069 8.69046 10.01567 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.002332 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.116765 B =12003.074347 C =12271.981466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.031 3.969 3 N -0.368 5.368 4 O 0.096 5.904 5 C -0.028 4.028 6 C -0.075 4.075 7 C -0.191 4.191 8 C -0.023 4.023 9 H 0.090 0.910 10 C -0.148 4.148 11 C 0.126 3.874 12 N -0.733 5.733 13 C 0.564 3.436 14 O -0.546 6.546 15 C -0.108 4.108 16 C -0.216 4.216 17 C -0.082 4.082 18 C -0.227 4.227 19 C 0.082 3.918 20 C -0.441 4.441 21 H 0.094 0.906 22 C 0.080 3.920 23 N -0.808 5.808 24 Si 0.917 3.083 25 H -0.268 1.268 26 H -0.292 1.292 27 H -0.246 1.246 28 C -0.134 4.134 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.400 0.600 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.287 0.713 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.863 12.739 -14.160 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 N -0.074 5.074 4 O 0.031 5.969 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.195 4.195 8 C -0.042 4.042 9 H 0.108 0.892 10 C -0.205 4.205 11 C 0.002 3.998 12 N -0.387 5.387 13 C 0.354 3.646 14 O -0.424 6.424 15 C -0.111 4.111 16 C -0.236 4.236 17 C -0.101 4.101 18 C -0.246 4.246 19 C 0.079 3.921 20 C -0.469 4.469 21 H 0.112 0.888 22 C -0.138 4.138 23 N -0.432 5.432 24 Si 0.744 3.256 25 H -0.195 1.195 26 H -0.219 1.219 27 H -0.169 1.169 28 C -0.154 4.154 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.236 0.764 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.129 14.444 -13.396 23.134 hybrid contribution -0.032 -1.452 -0.957 1.739 sum 12.097 12.992 -14.353 22.828 Atomic orbital electron populations 1.20359 0.85971 1.03915 1.03889 1.23419 0.98930 0.88281 1.02122 1.73841 0.89245 1.23905 1.20437 1.84803 1.21687 1.22400 1.67970 1.24243 0.98128 0.83915 1.02889 1.20369 0.90057 0.98745 1.04089 1.20705 0.91657 0.96778 1.10356 1.19659 0.99362 0.89287 0.95918 0.89163 1.21902 1.00596 1.02228 0.95792 1.21321 0.98948 0.82284 0.97203 1.45910 1.52512 1.08105 1.32222 1.18778 0.77126 0.88903 0.79822 1.90707 1.51745 1.59774 1.40201 1.19423 1.02128 0.90420 0.99166 1.20375 1.08023 0.93626 1.01534 1.20510 0.97767 0.94493 0.97304 1.21288 1.04154 0.98760 1.00436 1.17725 0.91662 0.90873 0.91839 1.19540 1.19694 1.08434 0.99231 0.88823 1.26177 0.93705 0.94255 0.99706 1.69655 1.24437 1.15401 1.33663 0.86279 0.76525 0.80116 0.82640 1.19492 1.21924 1.16900 1.21290 1.00692 0.94757 0.98709 0.89749 0.90491 0.89603 0.89405 0.89695 0.88889 0.92179 0.91472 0.91856 0.91146 0.91623 0.76397 0.88623 0.88256 0.87582 0.90280 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.19 36.01 0.33 -0.44 16 2 C 0.03 0.35 7.22 -82.10 -0.59 -0.25 16 3 N -0.37 -4.55 12.07 33.43 0.40 -4.15 16 4 O 0.10 1.05 11.20 17.18 0.19 1.25 16 5 C -0.03 -0.25 7.49 -35.30 -0.26 -0.51 16 6 C -0.08 -0.37 10.26 36.01 0.37 0.00 16 7 C -0.19 -1.83 4.93 -104.42 -0.52 -2.35 16 8 C -0.02 -0.20 2.69 -91.77 -0.25 -0.44 16 9 H 0.09 0.63 7.00 -51.93 -0.36 0.27 16 10 C -0.15 -1.13 8.92 37.16 0.33 -0.80 16 11 C 0.13 1.48 4.86 -4.05 -0.02 1.46 16 12 N -0.73 -9.94 5.28 -61.23 -0.32 -10.26 16 13 C 0.56 10.58 7.77 -12.31 -0.10 10.49 16 14 O -0.55 -12.02 16.33 5.33 0.09 -11.94 16 15 C -0.11 -2.22 5.87 -105.04 -0.62 -2.84 16 16 C -0.22 -3.95 9.55 -38.92 -0.37 -4.32 16 17 C -0.08 -1.62 10.01 -39.72 -0.40 -2.01 16 18 C -0.23 -5.16 7.14 -38.81 -0.28 -5.43 16 19 C 0.08 2.03 5.13 -106.87 -0.55 1.48 16 20 C -0.44 -11.72 9.60 -37.73 -0.36 -12.08 16 21 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 22 C 0.08 2.06 5.46 -17.34 -0.09 1.97 16 23 N -0.81 -21.15 13.93 55.55 0.77 -20.38 16 24 Si 0.92 20.17 24.44 -169.99 -4.15 16.02 16 25 H -0.27 -5.64 6.46 56.52 0.37 -5.28 16 26 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.25 -5.51 6.90 56.52 0.39 -5.12 16 28 C -0.13 -3.16 9.34 -38.45 -0.36 -3.52 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.70 5.18 -51.93 -0.27 0.44 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.39 7.17 -51.93 -0.37 0.01 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.49 7.34 -51.93 -0.38 0.11 16 37 H 0.06 0.51 5.94 -51.93 -0.31 0.20 16 38 H 0.07 0.87 6.27 -51.93 -0.33 0.55 16 39 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.40 4.45 5.71 -40.82 -0.23 4.22 16 41 H 0.10 1.36 6.38 -52.49 -0.33 1.03 16 42 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.11 2.40 4.29 -52.49 -0.23 2.17 16 44 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 45 H 0.12 2.80 7.64 -52.48 -0.40 2.40 16 LS Contribution 365.30 15.07 5.50 5.50 Total: -1.00 -30.70 365.30 -7.02 -37.73 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.78 Total: 5.83 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -3.73 Total: -19.60 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.85 Total: -34.79 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.28 Total: -10.69 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.15 Total: 16.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.70 -7.02 -37.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178871891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.016 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds