Wall clock time and date at job start Tue Mar 31 2020 15:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30178 * 126.80229 * 2 1 4 4 O 1.20921 * 111.60769 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56374 * 359.76521 * 4 3 2 6 6 C 1.50700 * 126.77644 * 180.28612 * 5 4 3 7 7 C 1.35450 * 106.45131 * 0.37857 * 5 4 3 8 8 C 1.50697 * 128.01254 * 179.91366 * 7 5 4 9 9 H 1.09004 * 109.46917 * 3.80778 * 8 7 5 10 10 C 1.53006 * 109.46814 * 243.81414 * 8 7 5 11 11 C 1.52992 * 109.47457 * 123.81441 * 8 7 5 12 12 N 1.46499 * 109.47199 * 185.00036 * 11 8 7 13 13 C 1.34781 * 119.99739 * 179.97438 * 12 11 8 14 14 O 1.21544 * 120.00521 * 0.02562 * 13 12 11 15 15 C 1.47891 * 119.99692 * 179.97438 * 13 12 11 16 16 C 1.39921 * 120.02418 * 359.73129 * 15 13 12 17 17 C 1.38335 * 120.35706 * 180.29310 * 16 15 13 18 18 C 1.37754 * 120.41049 * 359.95949 * 17 16 15 19 19 C 1.40750 * 120.03868 * 0.03925 * 18 17 16 20 20 C 1.41445 * 120.17354 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99678 * 149.25845 * 20 19 18 22 22 C 1.39929 * 119.99857 * 329.25742 * 20 19 18 23 23 N 1.30836 * 119.99858 * 166.76544 * 22 20 19 24 24 Si 1.86800 * 120.00291 * 346.76482 * 22 20 19 25 25 H 1.48503 * 109.46931 * 88.89722 * 24 22 20 26 26 H 1.48506 * 109.46969 * 208.89469 * 24 22 20 27 27 H 1.48493 * 109.47096 * 328.89699 * 24 22 20 28 28 C 1.38989 * 120.02595 * 180.02562 * 15 13 12 29 29 H 1.08998 * 109.47434 * 274.31736 * 1 2 3 30 30 H 1.09003 * 109.47226 * 34.32041 * 1 2 3 31 31 H 1.08999 * 109.46603 * 154.31857 * 1 2 3 32 32 H 1.08995 * 109.47303 * 274.53643 * 6 5 4 33 33 H 1.08998 * 109.47033 * 34.54018 * 6 5 4 34 34 H 1.09005 * 109.47136 * 154.53982 * 6 5 4 35 35 H 1.08994 * 109.47243 * 54.10501 * 10 8 7 36 36 H 1.09000 * 109.46541 * 174.10531 * 10 8 7 37 37 H 1.08996 * 109.46791 * 294.10359 * 10 8 7 38 38 H 1.09007 * 109.47330 * 64.99641 * 11 8 7 39 39 H 1.09008 * 109.46987 * 304.99964 * 11 8 7 40 40 H 0.96994 * 120.00114 * 0.02562 * 12 11 8 41 41 H 1.07994 * 119.82226 * 0.24826 * 16 15 13 42 42 H 1.08000 * 119.79163 * 179.97438 * 17 16 15 43 43 H 1.07995 * 119.97548 * 180.02562 * 18 17 16 44 44 H 0.96996 * 120.00026 * 180.02562 * 23 22 20 45 45 H 1.08006 * 120.20247 * 359.70680 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 0.0005 5 6 3.6025 -0.6067 0.0060 6 6 4.9022 -1.3694 0.0143 7 6 2.3540 -1.1320 0.0005 8 6 1.9591 -2.5864 0.0015 9 1 2.8532 -3.2055 0.0758 10 6 1.2180 -2.9144 -1.2962 11 6 1.0445 -2.8657 1.1957 12 7 0.7572 -4.3006 1.2656 13 6 -0.0338 -4.7825 2.2448 14 8 -0.5090 -4.0267 3.0695 15 6 -0.3243 -6.2309 2.3150 16 6 0.2171 -7.1005 1.3619 17 6 -0.0550 -8.4557 1.4175 18 6 -0.8611 -8.9648 2.4118 19 6 -1.4147 -8.1054 3.3793 20 6 -2.2423 -8.6252 4.4018 21 1 -2.2667 -8.1492 5.3709 22 6 -3.0295 -9.7560 4.1575 23 7 -3.5903 -10.3904 5.1549 24 14 -3.2797 -10.3597 2.4076 25 1 -2.1980 -11.3137 2.0537 26 1 -4.5949 -11.0414 2.3024 27 1 -3.2451 -9.2042 1.4756 28 6 -1.1403 -6.7284 3.3242 29 1 -0.3634 0.0774 1.0247 30 1 -0.3634 0.8488 -0.5794 31 1 -0.3632 -0.9262 -0.4454 32 1 5.2610 -1.4870 -1.0081 33 1 5.6415 -0.8211 0.5981 34 1 4.7440 -2.3520 0.4591 35 1 1.8291 -2.6178 -2.1486 36 1 1.0246 -3.9861 -1.3432 37 1 0.2723 -2.3731 -1.3213 38 1 0.1121 -2.3138 1.0763 39 1 1.5391 -2.5490 2.1141 40 1 1.1367 -4.9038 0.6077 41 1 0.8503 -6.7116 0.5783 42 1 0.3674 -9.1187 0.6769 43 1 -1.0686 -10.0240 2.4488 44 1 -4.1357 -11.1745 4.9857 45 1 -1.5604 -6.0608 4.0620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178871891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:39 Heat of formation + Delta-G solvation = 6.969663 kcal Electronic energy + Delta-G solvation = -26968.925849 eV Core-core repulsion = 23145.967783 eV Total energy + Delta-G solvation = -3822.958066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.95207 -41.06449 -39.19196 -38.11128 -35.66646 -35.41397 -34.59472 -32.98974 -32.09931 -31.66769 -29.77023 -28.45919 -27.86428 -26.89600 -25.05730 -23.86100 -22.45996 -21.71807 -21.56863 -21.04723 -19.63195 -18.69630 -18.16060 -17.70751 -17.31205 -17.15626 -16.53448 -16.39443 -15.66343 -15.50068 -15.25109 -15.12259 -14.57606 -14.54175 -14.44916 -14.41957 -14.01090 -13.89243 -13.80162 -13.70430 -13.67531 -13.31732 -13.26865 -12.87206 -12.68877 -12.60145 -12.36650 -12.30282 -12.23718 -11.70905 -11.56773 -11.53853 -11.19223 -10.87754 -10.78849 -10.17927 -10.08457 -9.60761 -9.54030 -8.88100 -6.55984 0.18733 0.49319 0.76225 1.16649 1.25903 1.42616 1.49303 1.96933 2.11308 2.13264 2.28760 2.68251 3.19688 3.46164 3.50277 3.60764 3.86492 3.94841 3.99697 4.20450 4.28400 4.29441 4.39197 4.43618 4.54551 4.57489 4.63682 4.72343 4.73632 4.76857 4.84753 4.86491 4.89692 4.93441 5.00219 5.09102 5.15711 5.18287 5.26406 5.39698 5.43629 5.46067 5.66070 5.72256 5.85715 6.12137 6.31098 6.59367 6.66770 6.75042 7.25454 7.30906 8.21240 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.002332 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.116765 B =12003.074347 C =12271.981466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.019 3.981 3 N -0.402 5.402 4 O 0.083 5.917 5 C -0.019 4.019 6 C -0.077 4.077 7 C -0.205 4.205 8 C -0.009 4.009 9 H 0.117 0.883 10 C -0.149 4.149 11 C 0.126 3.874 12 N -0.704 5.704 13 C 0.562 3.438 14 O -0.588 6.588 15 C -0.113 4.113 16 C -0.176 4.176 17 C -0.082 4.082 18 C -0.229 4.229 19 C 0.065 3.935 20 C -0.489 4.489 21 H 0.047 0.953 22 C 0.039 3.961 23 N -0.857 5.857 24 Si 0.975 3.025 25 H -0.243 1.243 26 H -0.282 1.282 27 H -0.250 1.250 28 C -0.167 4.167 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.417 0.583 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.109 0.891 44 H 0.294 0.706 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.036 11.962 -18.967 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 N -0.110 5.110 4 O 0.021 5.979 5 C -0.082 4.082 6 C -0.133 4.133 7 C -0.209 4.209 8 C -0.028 4.028 9 H 0.135 0.865 10 C -0.206 4.206 11 C 0.002 3.998 12 N -0.357 5.357 13 C 0.351 3.649 14 O -0.469 6.469 15 C -0.116 4.116 16 C -0.195 4.195 17 C -0.099 4.099 18 C -0.249 4.249 19 C 0.062 3.938 20 C -0.519 4.519 21 H 0.065 0.935 22 C -0.174 4.174 23 N -0.484 5.484 24 Si 0.797 3.203 25 H -0.168 1.168 26 H -0.209 1.209 27 H -0.174 1.174 28 C -0.187 4.187 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.256 0.744 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.127 0.873 44 H 0.104 0.896 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.359 13.671 -18.240 27.486 hybrid contribution -0.780 -0.979 0.433 1.324 sum 14.579 12.692 -17.808 26.282 Atomic orbital electron populations 1.20402 0.85375 1.04709 1.03675 1.23791 0.99641 0.88796 1.01706 1.73835 0.89931 1.25049 1.22222 1.84763 1.21236 1.23747 1.68201 1.24986 0.99525 0.83124 1.00605 1.20626 0.88227 0.98763 1.05732 1.20843 0.91713 0.96959 1.11416 1.19603 0.99587 0.88950 0.94644 0.86511 1.21934 1.00347 1.02839 0.95477 1.21429 0.99381 0.80608 0.98363 1.45630 1.50254 1.09308 1.30547 1.18590 0.77779 0.87990 0.80541 1.90703 1.53654 1.60412 1.42175 1.19698 1.01213 0.92138 0.98522 1.21055 1.05166 0.92848 1.00454 1.21074 0.96164 0.95754 0.96943 1.21513 1.04216 0.98729 1.00415 1.17785 0.91979 0.91628 0.92392 1.19477 1.23310 1.10422 0.98649 0.93520 1.26961 0.92862 0.93957 1.03641 1.69704 1.26409 1.16726 1.35565 0.85416 0.77620 0.79754 0.77470 1.16834 1.20887 1.17382 1.21203 1.03084 0.94331 1.00098 0.90400 0.89978 0.88592 0.87311 0.88717 0.87483 0.91010 0.90302 0.92634 0.91944 0.93048 0.74361 0.82707 0.83208 0.87346 0.89552 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.19 71.24 0.65 -0.85 16 2 C 0.02 0.40 7.22 43.58 0.31 0.72 16 3 N -0.40 -9.77 12.07 -49.54 -0.60 -10.37 16 4 O 0.08 1.73 11.20 71.66 0.80 2.53 16 5 C -0.02 -0.28 7.49 25.04 0.19 -0.10 16 6 C -0.08 -0.44 10.26 71.24 0.73 0.29 16 7 C -0.20 -3.42 4.93 -19.74 -0.10 -3.52 16 8 C -0.01 -0.11 2.69 -11.54 -0.03 -0.15 16 9 H 0.12 0.95 7.00 -2.38 -0.02 0.93 16 10 C -0.15 -1.61 8.92 71.98 0.64 -0.97 16 11 C 0.13 2.61 4.86 86.38 0.42 3.03 16 12 N -0.70 -16.29 5.28 -465.92 -2.46 -18.75 16 13 C 0.56 20.08 7.77 86.80 0.67 20.75 16 14 O -0.59 -26.24 16.33 -3.85 -0.06 -26.30 16 15 C -0.11 -4.39 5.87 -20.13 -0.12 -4.51 16 16 C -0.18 -5.39 9.55 22.70 0.22 -5.18 16 17 C -0.08 -2.72 10.01 22.18 0.22 -2.50 16 18 C -0.23 -9.90 7.14 22.77 0.16 -9.74 16 19 C 0.06 3.28 5.13 -21.32 -0.11 3.17 16 20 C -0.49 -28.09 9.60 23.47 0.23 -27.86 16 21 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 22 C 0.04 2.09 5.46 85.25 0.47 2.56 16 23 N -0.86 -47.68 13.93 21.82 0.30 -47.38 16 24 Si 0.97 41.33 24.44 68.60 1.68 43.00 16 25 H -0.24 -9.26 6.46 99.48 0.64 -8.62 16 26 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 27 H -0.25 -10.64 6.90 99.48 0.69 -9.95 16 28 C -0.17 -8.13 9.34 23.00 0.21 -7.91 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.46 5.18 -2.39 -0.01 1.45 16 32 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.11 0.36 7.17 -2.38 -0.02 0.34 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.67 7.34 -2.39 -0.02 0.66 16 37 H 0.05 0.70 5.94 -2.39 -0.01 0.69 16 38 H 0.06 1.45 6.27 -2.38 -0.01 1.43 16 39 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.42 6.59 5.71 -92.71 -0.53 6.06 16 41 H 0.16 2.98 6.38 -2.91 -0.02 2.96 16 42 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.11 4.61 4.29 -2.91 -0.01 4.60 16 44 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 45 H 0.09 4.58 7.64 -2.91 -0.02 4.55 16 Total: -1.00 -74.80 365.30 4.86 -69.94 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.43 Total: 20.06 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 4.77 Total: -32.74 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -2.75 Total: -76.50 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.74 Total: -23.77 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.68 Total: 43.00 kcal Total: -74.80 4.86 -69.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178871891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.906 kcal (2) G-P(sol) polarization free energy of solvation -74.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds