Wall clock time and date at job start Tue Mar 31 2020 15:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30175 * 126.79993 * 2 1 4 4 O 1.20922 * 111.60381 * 179.68940 * 3 2 1 5 5 C 1.34044 * 111.56615 * 0.45050 * 4 3 2 6 6 C 1.50700 * 126.77713 * 179.82830 * 5 4 3 7 7 C 1.35453 * 106.44280 * 359.56798 * 5 4 3 8 8 C 1.50706 * 128.00277 * 180.24159 * 7 5 4 9 9 H 1.08996 * 109.47039 * 359.70731 * 8 7 5 10 10 C 1.53003 * 109.46760 * 119.70122 * 8 7 5 11 11 C 1.52995 * 109.47169 * 239.70176 * 8 7 5 12 12 C 1.50700 * 109.47030 * 173.21421 * 11 8 7 13 13 O 1.21273 * 120.00200 * 353.82049 * 12 11 8 14 14 N 1.34780 * 119.99774 * 173.82199 * 12 11 8 15 15 C 1.37140 * 119.99977 * 5.66394 * 14 12 11 16 16 H 1.07997 * 120.00253 * 299.14804 * 15 14 12 17 17 C 1.38890 * 119.99788 * 119.14677 * 15 14 12 18 18 N 1.31425 * 119.99986 * 180.14656 * 17 15 14 19 19 Si 1.86797 * 119.99954 * 0.15016 * 17 15 14 20 20 H 1.48496 * 109.47316 * 94.72382 * 19 17 15 21 21 H 1.48507 * 109.47114 * 214.72130 * 19 17 15 22 22 H 1.48501 * 109.47171 * 334.72056 * 19 17 15 23 23 C 1.39786 * 119.99940 * 185.67014 * 14 12 11 24 24 C 1.38962 * 120.07749 * 7.39433 * 23 14 12 25 25 C 1.38085 * 119.92186 * 179.78987 * 24 23 14 26 26 C 1.38313 * 120.07598 * 0.46979 * 25 24 23 27 27 C 1.38306 * 120.15454 * 359.78344 * 26 25 24 28 28 C 1.38082 * 120.08093 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.46970 * 275.07891 * 1 2 3 30 30 H 1.08994 * 109.47083 * 35.08404 * 1 2 3 31 31 H 1.09002 * 109.46644 * 155.08368 * 1 2 3 32 32 H 1.09002 * 109.46897 * 269.68491 * 6 5 4 33 33 H 1.09000 * 109.46699 * 29.68251 * 6 5 4 34 34 H 1.08994 * 109.47026 * 149.68613 * 6 5 4 35 35 H 1.08993 * 109.47794 * 300.00113 * 10 8 7 36 36 H 1.09005 * 109.46912 * 60.00703 * 10 8 7 37 37 H 1.09005 * 109.46754 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.47224 * 293.22215 * 11 8 7 39 39 H 1.09003 * 109.46724 * 53.21809 * 11 8 7 40 40 H 0.96996 * 119.99651 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.03928 * 0.02562 * 24 23 14 42 42 H 1.08000 * 119.96460 * 180.25521 * 25 24 23 43 43 H 1.07999 * 119.91837 * 179.76405 * 26 25 24 44 44 H 1.08005 * 119.96199 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.03726 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7254 0.0061 5 6 3.6025 -0.6067 0.0013 6 6 4.9023 -1.3695 0.0027 7 6 2.3540 -1.1320 0.0008 8 6 1.9591 -2.5864 0.0011 9 1 2.8557 -3.2062 -0.0034 10 6 1.1351 -2.8908 1.2538 11 6 1.1239 -2.8884 -1.2446 12 6 0.8699 -4.3713 -1.3317 13 8 1.4048 -5.1253 -0.5468 14 7 0.0483 -4.8595 -2.2821 15 6 -0.4645 -4.0236 -3.2407 16 1 -1.0884 -3.1903 -2.9529 17 6 -0.1816 -4.2486 -4.5817 18 7 -0.6706 -3.4458 -5.5002 19 14 0.8940 -5.6923 -5.0798 20 1 0.0353 -6.8532 -5.4260 21 1 1.7146 -5.3147 -6.2586 22 1 1.7875 -6.0566 -3.9510 23 6 -0.2812 -6.2180 -2.2905 24 6 0.1097 -7.0360 -1.2373 25 6 -0.2213 -8.3765 -1.2469 26 6 -0.9326 -8.9073 -2.3077 27 6 -1.3188 -8.0972 -3.3600 28 6 -0.9955 -6.7547 -3.3547 29 1 -0.3633 0.0910 1.0236 30 1 -0.3633 0.8409 -0.5906 31 1 -0.3633 -0.9321 -0.4330 32 1 5.2163 -1.5541 -1.0247 33 1 5.6657 -0.7853 0.5165 34 1 4.7648 -2.3205 0.5171 35 1 1.7300 -2.6756 2.1414 36 1 0.2384 -2.2709 1.2584 37 1 0.8491 -3.9426 1.2539 38 1 0.1728 -2.3598 -1.1813 39 1 1.6639 -2.5595 -2.1326 40 1 -0.4733 -3.6032 -6.4367 41 1 0.6683 -6.6229 -0.4106 42 1 0.0786 -9.0120 -0.4267 43 1 -1.1869 -9.9570 -2.3143 44 1 -1.8738 -8.5150 -4.1870 45 1 -1.2970 -6.1229 -4.1770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178997489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:30 Heat of formation + Delta-G solvation = 63.528435 kcal Electronic energy + Delta-G solvation = -28671.459518 eV Core-core repulsion = 24850.954024 eV Total energy + Delta-G solvation = -3820.505493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.76384 -40.21224 -37.96383 -36.28522 -35.17131 -33.64725 -32.37887 -32.19411 -30.19797 -29.52979 -28.62631 -27.54983 -27.14681 -25.28333 -23.74452 -22.10833 -21.45852 -20.38864 -19.94098 -19.33212 -18.10931 -17.47835 -16.74175 -16.29595 -15.92086 -15.65829 -14.94555 -14.76835 -14.14756 -13.96541 -13.71364 -13.46742 -13.33421 -13.28205 -13.10076 -12.96767 -12.89720 -12.78880 -12.63551 -12.44712 -12.32219 -12.05657 -11.93402 -11.44081 -11.23329 -11.11527 -10.98661 -10.86731 -10.71152 -10.29455 -10.20248 -10.02379 -9.63809 -9.46708 -9.05665 -8.96453 -8.50452 -8.09743 -7.05960 -6.58790 -4.62545 1.59994 1.99645 2.10742 2.36872 3.07624 3.18735 3.23843 3.27658 3.47330 3.98508 4.06769 4.37006 4.57366 4.59395 4.73482 4.91252 5.04747 5.28352 5.36760 5.40053 5.43667 5.53975 5.56588 5.59949 5.61220 5.70905 5.75660 5.81539 5.84417 5.87508 6.00104 6.16257 6.20593 6.23153 6.26163 6.32921 6.36728 6.49879 6.56804 6.64132 6.77946 7.12265 7.18967 7.24964 7.33264 7.68014 7.96234 8.10169 8.43609 8.71886 8.99981 9.31205 10.42266 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.004123 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.092168 B = 6790.097852 C = 7517.704044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.031 3.969 3 N -0.373 5.373 4 O 0.091 5.909 5 C -0.039 4.039 6 C -0.073 4.073 7 C -0.182 4.182 8 C -0.001 4.001 9 H 0.090 0.910 10 C -0.145 4.145 11 C -0.113 4.113 12 C 0.507 3.493 13 O -0.558 6.558 14 N -0.412 5.412 15 C -0.368 4.368 16 H 0.107 0.893 17 C 0.081 3.919 18 N -0.857 5.857 19 Si 0.875 3.125 20 H -0.256 1.256 21 H -0.290 1.290 22 H -0.260 1.260 23 C 0.163 3.837 24 C -0.181 4.181 25 C -0.109 4.109 26 C -0.171 4.171 27 C -0.104 4.104 28 C -0.166 4.166 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.279 0.721 41 H 0.174 0.826 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 0.399 8.672 9.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 N -0.080 5.080 4 O 0.027 5.973 5 C -0.102 4.102 6 C -0.130 4.130 7 C -0.186 4.186 8 C -0.020 4.020 9 H 0.108 0.892 10 C -0.202 4.202 11 C -0.152 4.152 12 C 0.299 3.701 13 O -0.441 6.441 14 N -0.122 5.122 15 C -0.495 4.495 16 H 0.125 0.875 17 C -0.129 4.129 18 N -0.490 5.490 19 Si 0.702 3.298 20 H -0.181 1.181 21 H -0.217 1.217 22 H -0.184 1.184 23 C 0.066 3.934 24 C -0.200 4.200 25 C -0.127 4.127 26 C -0.190 4.190 27 C -0.123 4.123 28 C -0.186 4.186 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.191 0.809 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.967 1.533 8.834 10.250 hybrid contribution 0.178 -1.376 -0.826 1.615 sum 5.146 0.157 8.009 9.521 Atomic orbital electron populations 1.20352 0.86138 1.04464 1.03029 1.23395 0.98861 0.88383 1.02109 1.73790 0.89321 1.24057 1.20823 1.84759 1.21684 1.22553 1.68314 1.24197 0.98225 0.83751 1.04012 1.20326 0.89951 0.98583 1.04141 1.21041 0.91422 0.97552 1.08572 1.19285 0.99782 0.87578 0.95368 0.89194 1.21891 0.99277 1.03165 0.95912 1.21485 1.01948 0.93360 0.98421 1.20900 0.77567 0.90759 0.80839 1.90252 1.50712 1.59109 1.44042 1.41445 1.39526 1.04874 1.26337 1.18954 1.33947 1.11089 0.85505 0.87516 1.25579 0.94728 0.96626 0.95957 1.69644 1.41604 1.36034 1.01711 0.87022 0.81217 0.82516 0.79081 1.18092 1.21720 1.18418 1.18562 0.95083 0.85876 0.93837 1.22539 1.03505 0.93443 1.00534 1.21003 0.98518 0.95313 0.97894 1.20909 1.03098 0.99042 0.95976 1.20817 0.99946 0.93368 0.98156 1.21169 1.02418 0.95654 0.99381 0.90448 0.90543 0.89187 0.89446 0.90168 0.88955 0.93197 0.92930 0.90457 0.88718 0.88534 0.91024 0.80945 0.86973 0.87356 0.86930 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.23 36.01 0.33 -0.73 16 2 C 0.03 0.47 7.20 -82.10 -0.59 -0.12 16 3 N -0.37 -5.97 12.07 33.42 0.40 -5.56 16 4 O 0.09 1.34 11.20 17.17 0.19 1.54 16 5 C -0.04 -0.51 7.49 -35.30 -0.26 -0.78 16 6 C -0.07 -0.67 10.17 36.01 0.37 -0.31 16 7 C -0.18 -2.64 4.92 -104.42 -0.51 -3.15 16 8 C 0.00 -0.01 2.30 -91.77 -0.21 -0.22 16 9 H 0.09 1.34 6.79 -51.93 -0.35 0.99 16 10 C -0.15 -2.03 8.87 37.16 0.33 -1.70 16 11 C -0.11 -1.99 3.82 -27.89 -0.11 -2.09 16 12 C 0.51 10.55 7.15 -10.98 -0.08 10.47 16 13 O -0.56 -11.72 10.82 5.56 0.06 -11.66 16 14 N -0.41 -9.49 2.13 -58.98 -0.13 -9.62 16 15 C -0.37 -9.04 8.08 -14.94 -0.12 -9.16 16 16 H 0.11 2.73 7.88 -52.49 -0.41 2.31 16 17 C 0.08 2.05 4.53 -17.48 -0.08 1.97 16 18 N -0.86 -22.56 13.96 55.49 0.77 -21.79 16 19 Si 0.88 20.57 23.70 -169.99 -4.03 16.54 16 20 H -0.26 -5.78 6.08 56.52 0.34 -5.43 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.26 -6.46 6.83 56.52 0.39 -6.07 16 23 C 0.16 3.70 5.02 -83.70 -0.42 3.28 16 24 C -0.18 -3.77 8.98 -39.37 -0.35 -4.13 16 25 C -0.11 -1.97 10.04 -39.61 -0.40 -2.36 16 26 C -0.17 -2.99 10.04 -39.53 -0.40 -3.39 16 27 C -0.10 -2.00 9.96 -39.61 -0.39 -2.39 16 28 C -0.17 -3.68 5.71 -39.37 -0.22 -3.90 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.18 5.11 -51.93 -0.27 0.91 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.80 7.40 -51.93 -0.38 0.41 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.69 6.62 -51.93 -0.34 0.34 16 37 H 0.08 1.20 6.34 -51.93 -0.33 0.87 16 38 H 0.09 1.62 5.31 -51.93 -0.28 1.35 16 39 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 40 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.17 3.64 4.71 -55.28 -0.26 3.38 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 45 H 0.14 3.26 4.49 -52.49 -0.24 3.03 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -28.40 353.37 -6.40 -34.80 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.87 Total: 9.15 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -3.13 Total: -18.72 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 1.05 Total: -36.97 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.25 Total: -10.13 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.03 Total: 16.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.40 -6.40 -34.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178997489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.327 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds