Wall clock time and date at job start Tue Mar 31 2020 15:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30175 * 126.79993 * 2 1 4 4 O 1.20922 * 111.60381 * 179.68940 * 3 2 1 5 5 C 1.34044 * 111.56615 * 0.45050 * 4 3 2 6 6 C 1.50700 * 126.77713 * 179.82830 * 5 4 3 7 7 C 1.35453 * 106.44280 * 359.56798 * 5 4 3 8 8 C 1.50706 * 128.00277 * 180.24159 * 7 5 4 9 9 H 1.08996 * 109.47039 * 359.70731 * 8 7 5 10 10 C 1.53003 * 109.46760 * 119.70122 * 8 7 5 11 11 C 1.52995 * 109.47169 * 239.70176 * 8 7 5 12 12 C 1.50700 * 109.47030 * 173.21421 * 11 8 7 13 13 O 1.21273 * 120.00200 * 353.82049 * 12 11 8 14 14 N 1.34780 * 119.99774 * 173.82199 * 12 11 8 15 15 C 1.37140 * 119.99977 * 5.66394 * 14 12 11 16 16 H 1.07997 * 120.00253 * 299.14804 * 15 14 12 17 17 C 1.38890 * 119.99788 * 119.14677 * 15 14 12 18 18 N 1.31425 * 119.99986 * 180.14656 * 17 15 14 19 19 Si 1.86797 * 119.99954 * 0.15016 * 17 15 14 20 20 H 1.48496 * 109.47316 * 94.72382 * 19 17 15 21 21 H 1.48507 * 109.47114 * 214.72130 * 19 17 15 22 22 H 1.48501 * 109.47171 * 334.72056 * 19 17 15 23 23 C 1.39786 * 119.99940 * 185.67014 * 14 12 11 24 24 C 1.38962 * 120.07749 * 7.39433 * 23 14 12 25 25 C 1.38085 * 119.92186 * 179.78987 * 24 23 14 26 26 C 1.38313 * 120.07598 * 0.46979 * 25 24 23 27 27 C 1.38306 * 120.15454 * 359.78344 * 26 25 24 28 28 C 1.38082 * 120.08093 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.46970 * 275.07891 * 1 2 3 30 30 H 1.08994 * 109.47083 * 35.08404 * 1 2 3 31 31 H 1.09002 * 109.46644 * 155.08368 * 1 2 3 32 32 H 1.09002 * 109.46897 * 269.68491 * 6 5 4 33 33 H 1.09000 * 109.46699 * 29.68251 * 6 5 4 34 34 H 1.08994 * 109.47026 * 149.68613 * 6 5 4 35 35 H 1.08993 * 109.47794 * 300.00113 * 10 8 7 36 36 H 1.09005 * 109.46912 * 60.00703 * 10 8 7 37 37 H 1.09005 * 109.46754 * 179.97438 * 10 8 7 38 38 H 1.08997 * 109.47224 * 293.22215 * 11 8 7 39 39 H 1.09003 * 109.46724 * 53.21809 * 11 8 7 40 40 H 0.96996 * 119.99651 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.03928 * 0.02562 * 24 23 14 42 42 H 1.08000 * 119.96460 * 180.25521 * 25 24 23 43 43 H 1.07999 * 119.91837 * 179.76405 * 26 25 24 44 44 H 1.08005 * 119.96199 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.03726 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7254 0.0061 5 6 3.6025 -0.6067 0.0013 6 6 4.9023 -1.3695 0.0027 7 6 2.3540 -1.1320 0.0008 8 6 1.9591 -2.5864 0.0011 9 1 2.8557 -3.2062 -0.0034 10 6 1.1351 -2.8908 1.2538 11 6 1.1239 -2.8884 -1.2446 12 6 0.8699 -4.3713 -1.3317 13 8 1.4048 -5.1253 -0.5468 14 7 0.0483 -4.8595 -2.2821 15 6 -0.4645 -4.0236 -3.2407 16 1 -1.0884 -3.1903 -2.9529 17 6 -0.1816 -4.2486 -4.5817 18 7 -0.6706 -3.4458 -5.5002 19 14 0.8940 -5.6923 -5.0798 20 1 0.0353 -6.8532 -5.4260 21 1 1.7146 -5.3147 -6.2586 22 1 1.7875 -6.0566 -3.9510 23 6 -0.2812 -6.2180 -2.2905 24 6 0.1097 -7.0360 -1.2373 25 6 -0.2213 -8.3765 -1.2469 26 6 -0.9326 -8.9073 -2.3077 27 6 -1.3188 -8.0972 -3.3600 28 6 -0.9955 -6.7547 -3.3547 29 1 -0.3633 0.0910 1.0236 30 1 -0.3633 0.8409 -0.5906 31 1 -0.3633 -0.9321 -0.4330 32 1 5.2163 -1.5541 -1.0247 33 1 5.6657 -0.7853 0.5165 34 1 4.7648 -2.3205 0.5171 35 1 1.7300 -2.6756 2.1414 36 1 0.2384 -2.2709 1.2584 37 1 0.8491 -3.9426 1.2539 38 1 0.1728 -2.3598 -1.1813 39 1 1.6639 -2.5595 -2.1326 40 1 -0.4733 -3.6032 -6.4367 41 1 0.6683 -6.6229 -0.4106 42 1 0.0786 -9.0120 -0.4267 43 1 -1.1869 -9.9570 -2.3143 44 1 -1.8738 -8.5150 -4.1870 45 1 -1.2970 -6.1229 -4.1770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178997489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:29 Heat of formation + Delta-G solvation = 49.373740 kcal Electronic energy + Delta-G solvation = -28672.073311 eV Core-core repulsion = 24850.954024 eV Total energy + Delta-G solvation = -3821.119287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.89813 -41.84581 -39.45974 -37.56607 -36.85659 -34.73834 -34.18577 -33.42510 -31.73753 -31.02060 -29.71506 -28.63740 -28.40107 -27.10527 -24.97450 -23.60766 -22.98131 -21.68554 -21.05094 -21.01566 -19.76763 -18.63055 -18.18235 -17.68897 -17.52692 -17.20415 -16.48801 -16.28305 -15.59750 -15.33244 -15.15910 -14.89716 -14.76597 -14.57871 -14.40854 -14.27470 -14.11234 -13.89732 -13.81762 -13.75909 -13.63260 -13.40786 -13.16364 -13.11693 -12.64636 -12.47184 -12.30985 -12.23913 -12.15308 -12.13042 -11.67432 -11.43752 -11.25936 -10.85873 -10.76779 -10.17371 -10.00419 -9.65160 -8.79594 -8.48185 -6.57996 0.44887 0.51931 0.55630 1.20697 1.22596 1.28256 1.37140 1.83748 2.09940 2.21332 2.49122 2.71789 3.09396 3.23556 3.56671 3.71966 3.83183 4.09397 4.14589 4.20255 4.22501 4.30096 4.40741 4.45901 4.49478 4.60925 4.68779 4.69516 4.71174 4.74930 4.78950 4.83301 4.85720 4.94915 4.97779 5.06695 5.17899 5.23438 5.25585 5.32561 5.46002 5.51091 5.62217 5.68910 5.74774 5.99018 6.05613 6.40686 6.83076 7.22195 7.32983 7.55012 8.49625 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.004123 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.092168 B = 6790.097852 C = 7517.704044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.023 3.977 3 N -0.398 5.398 4 O 0.085 5.915 5 C -0.026 4.026 6 C -0.075 4.075 7 C -0.203 4.203 8 C 0.013 3.987 9 H 0.091 0.909 10 C -0.140 4.140 11 C -0.106 4.106 12 C 0.502 3.498 13 O -0.560 6.560 14 N -0.428 5.428 15 C -0.356 4.356 16 H 0.087 0.913 17 C 0.053 3.947 18 N -0.891 5.891 19 Si 0.921 3.079 20 H -0.242 1.242 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.133 3.867 24 C -0.197 4.197 25 C -0.102 4.102 26 C -0.158 4.158 27 C -0.107 4.107 28 C -0.193 4.193 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.282 0.718 41 H 0.168 0.832 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.138 0.862 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.688 -1.723 9.815 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 N -0.107 5.107 4 O 0.023 5.977 5 C -0.089 4.089 6 C -0.132 4.132 7 C -0.207 4.207 8 C -0.007 4.007 9 H 0.110 0.890 10 C -0.197 4.197 11 C -0.145 4.145 12 C 0.295 3.705 13 O -0.443 6.443 14 N -0.139 5.139 15 C -0.483 4.483 16 H 0.104 0.896 17 C -0.153 4.153 18 N -0.526 5.526 19 Si 0.748 3.252 20 H -0.166 1.166 21 H -0.219 1.219 22 H -0.206 1.206 23 C 0.037 3.963 24 C -0.216 4.216 25 C -0.120 4.120 26 C -0.177 4.177 27 C -0.126 4.126 28 C -0.213 4.213 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.184 0.816 42 H 0.167 0.833 43 H 0.170 0.830 44 H 0.156 0.844 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.732 -0.601 9.985 11.529 hybrid contribution -0.078 -0.803 -1.084 1.351 sum 5.654 -1.404 8.901 10.638 Atomic orbital electron populations 1.20407 0.85182 1.04156 1.04245 1.23742 0.99733 0.88481 1.01547 1.73778 0.89843 1.24730 1.22301 1.84732 1.21293 1.23321 1.68344 1.24868 0.99359 0.83222 1.01475 1.20562 0.88611 0.98781 1.05198 1.21009 0.92098 0.97055 1.10513 1.19124 0.99325 0.88005 0.94225 0.89035 1.21831 0.99704 1.02077 0.96109 1.21470 1.02398 0.91239 0.99411 1.21332 0.77066 0.91923 0.80149 1.90238 1.50650 1.59585 1.43821 1.41546 1.40459 1.05249 1.26630 1.18753 1.32982 1.10619 0.85944 0.89570 1.25965 0.95451 0.97880 0.96025 1.69699 1.43338 1.37492 1.02108 0.86327 0.79776 0.81400 0.77717 1.16607 1.21856 1.20565 1.18843 0.96563 0.85802 0.95080 1.22614 1.04204 0.94819 0.99996 1.21441 0.97187 0.94373 0.99031 1.21379 1.01040 1.00853 0.94427 1.21203 0.99506 0.92276 0.99577 1.21170 1.04024 0.97042 0.99109 0.88520 0.90349 0.89822 0.88536 0.87700 0.87999 0.91499 0.92366 0.92148 0.88679 0.89920 0.90735 0.81565 0.83332 0.83022 0.84418 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.13 9.23 71.24 0.66 -1.47 16 2 C 0.02 0.70 7.20 43.58 0.31 1.01 16 3 N -0.40 -12.64 12.07 -49.56 -0.60 -13.24 16 4 O 0.09 2.46 11.20 71.60 0.80 3.26 16 5 C -0.03 -0.65 7.49 25.04 0.19 -0.47 16 6 C -0.07 -1.22 10.17 71.24 0.72 -0.49 16 7 C -0.20 -5.76 4.92 -19.73 -0.10 -5.86 16 8 C 0.01 0.37 2.30 -11.54 -0.03 0.34 16 9 H 0.09 2.65 6.79 -2.39 -0.02 2.63 16 10 C -0.14 -3.81 8.87 71.98 0.64 -3.17 16 11 C -0.11 -3.82 3.82 29.85 0.11 -3.70 16 12 C 0.50 21.29 7.15 87.66 0.63 21.92 16 13 O -0.56 -23.58 10.82 -3.01 -0.03 -23.61 16 14 N -0.43 -20.16 2.13 -458.90 -0.98 -21.14 16 15 C -0.36 -18.12 8.08 84.02 0.68 -17.44 16 16 H 0.09 4.65 7.88 -2.91 -0.02 4.62 16 17 C 0.05 2.77 4.53 84.91 0.38 3.16 16 18 N -0.89 -48.27 13.96 21.65 0.30 -47.97 16 19 Si 0.92 43.21 23.70 68.60 1.63 44.83 16 20 H -0.24 -10.64 6.08 99.48 0.60 -10.03 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.28 -13.98 6.83 99.48 0.68 -13.30 16 23 C 0.13 6.04 5.02 38.22 0.19 6.23 16 24 C -0.20 -7.99 8.98 22.41 0.20 -7.79 16 25 C -0.10 -3.34 10.04 22.25 0.22 -3.12 16 26 C -0.16 -4.86 10.04 22.30 0.22 -4.64 16 27 C -0.11 -3.83 9.96 22.25 0.22 -3.61 16 28 C -0.19 -8.46 5.71 22.41 0.13 -8.34 16 29 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 2.24 5.11 -2.39 -0.01 2.23 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.51 7.40 -2.39 -0.02 1.49 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.49 6.62 -2.38 -0.02 1.47 16 37 H 0.06 1.85 6.34 -2.38 -0.02 1.83 16 38 H 0.10 3.40 5.31 -2.39 -0.01 3.38 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.17 6.92 4.71 -47.04 -0.22 6.70 16 42 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 43 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 45 H 0.12 5.56 4.49 -2.91 -0.01 5.55 16 Total: -1.00 -62.50 353.37 7.20 -55.30 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.69 Total: 30.00 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 5.39 Total: -27.43 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.28 Total: -82.35 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.77 Total: -20.35 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.63 Total: 44.83 kcal Total: -62.50 7.20 -55.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178997489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.674 kcal (2) G-P(sol) polarization free energy of solvation -62.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds