Wall clock time and date at job start Tue Mar 31 2020 15:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39833 * 126.45291 * 2 1 4 4 C 1.35459 * 107.86702 * 180.02562 * 3 2 1 5 5 N 1.35545 * 108.86983 * 359.74966 * 4 3 2 6 6 C 1.46508 * 125.67730 * 180.24840 * 5 4 3 7 7 C 1.37655 * 108.64423 * 0.40401 * 5 4 3 8 8 C 1.46643 * 126.23223 * 179.86777 * 7 5 4 9 9 O 1.21700 * 120.00269 * 94.13141 * 8 7 5 10 10 N 1.34775 * 119.99614 * 274.12399 * 8 7 5 11 11 C 1.39832 * 119.99779 * 184.91947 * 10 8 7 12 12 C 1.38957 * 120.04802 * 323.43864 * 11 10 8 13 13 C 1.38114 * 120.04031 * 179.97438 * 12 11 10 14 14 C 1.38221 * 120.12524 * 359.72432 * 13 12 11 15 15 C 1.38763 * 120.08620 * 0.55214 * 14 13 12 16 16 O 1.35904 * 120.01599 * 179.72026 * 15 14 13 17 17 C 1.42901 * 117.00145 * 359.72970 * 16 15 14 18 18 C 1.52997 * 109.47315 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47171 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99916 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00081 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00218 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00232 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46979 * 59.99872 * 23 21 19 25 25 H 1.48497 * 109.47206 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47033 * 300.00323 * 23 21 19 27 27 C 1.38622 * 119.96547 * 359.44852 * 15 14 13 28 28 H 1.09003 * 109.46704 * 269.99638 * 1 2 3 29 29 H 1.08993 * 109.47417 * 29.99585 * 1 2 3 30 30 H 1.08992 * 109.46766 * 150.00429 * 1 2 3 31 31 H 1.08006 * 126.07194 * 359.97438 * 3 2 1 32 32 H 1.07999 * 125.56266 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47126 * 272.10581 * 6 5 4 34 34 H 1.09000 * 109.46692 * 32.10816 * 6 5 4 35 35 H 1.08999 * 109.46697 * 152.10720 * 6 5 4 36 36 H 0.97002 * 120.00185 * 4.92448 * 10 8 7 37 37 H 1.08003 * 119.97367 * 359.95279 * 12 11 10 38 38 H 1.08001 * 119.93637 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.95099 * 180.27398 * 14 13 12 40 40 H 1.08996 * 109.46777 * 299.99891 * 17 16 15 41 41 H 1.09007 * 109.47144 * 59.99410 * 17 16 15 42 42 H 1.09004 * 109.46564 * 299.99325 * 18 17 16 43 43 H 1.08994 * 109.47362 * 59.99278 * 18 17 16 44 44 H 0.96995 * 120.00431 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.06133 * 180.29907 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6930 -0.0006 5 7 3.6285 -0.6624 0.0047 6 6 4.8228 -1.5110 0.0110 7 6 2.3264 -1.1090 -0.0005 8 6 1.8903 -2.5090 -0.0002 9 8 1.6320 -3.0657 1.0508 10 7 1.7753 -3.1792 -1.1638 11 6 1.2619 -4.4799 -1.1737 12 6 1.5582 -5.3528 -0.1340 13 6 1.0506 -6.6373 -0.1437 14 6 0.2423 -7.0559 -1.1839 15 6 -0.0523 -6.1904 -2.2277 16 8 -0.8426 -6.6053 -3.2525 17 6 -1.3305 -7.9472 -3.1933 18 6 -2.1945 -8.2305 -4.4238 19 6 -2.7085 -9.6457 -4.3617 20 1 -2.4455 -10.2796 -3.5277 21 6 -3.5152 -10.1310 -5.3689 22 7 -3.8359 -9.3590 -6.3842 23 14 -4.1518 -11.8855 -5.2923 24 1 -4.9661 -12.0634 -4.0633 25 1 -4.9905 -12.1604 -6.4865 26 1 -3.0042 -12.8277 -5.2663 27 6 0.4552 -4.9004 -2.2217 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3632 -0.8900 -0.5137 31 1 2.0135 2.1550 -0.0004 32 1 4.4972 1.3255 -0.0003 33 1 5.1436 -1.6946 -1.0144 34 1 5.6217 -1.0096 0.5574 35 1 4.5917 -2.4599 0.4949 36 1 2.0488 -2.7594 -1.9944 37 1 2.1862 -5.0268 0.6819 38 1 1.2823 -7.3145 0.6650 39 1 -0.1567 -8.0595 -1.1864 40 1 -0.4886 -8.6393 -3.1738 41 1 -1.9284 -8.0769 -2.2912 42 1 -3.0364 -7.5383 -4.4436 43 1 -1.5962 -8.1008 -5.3256 44 1 -4.4038 -9.7002 -7.0926 45 1 0.2229 -4.2239 -3.0309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189064519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:54 Heat of formation + Delta-G solvation = -2.970324 kcal Electronic energy + Delta-G solvation = -26346.906279 eV Core-core repulsion = 22523.517183 eV Total energy + Delta-G solvation = -3823.389096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80754 -40.35741 -39.16721 -37.08613 -34.68921 -34.08434 -33.37461 -30.99299 -30.80954 -29.73748 -29.11018 -28.17276 -25.63771 -25.11033 -23.59129 -22.64441 -21.79531 -20.65124 -20.41827 -19.65906 -18.28388 -17.86634 -16.53164 -16.38762 -15.99788 -15.76268 -15.55581 -15.40115 -15.27480 -14.82444 -14.47713 -14.44785 -13.74337 -13.57181 -13.51079 -13.47681 -13.12500 -12.98182 -12.75003 -12.35438 -12.34133 -12.31789 -11.99106 -11.79909 -11.65580 -11.38883 -10.92039 -10.83221 -10.56785 -10.40176 -10.18329 -9.83235 -9.67056 -9.32521 -8.89624 -8.47925 -8.45354 -8.37224 -7.82599 -6.11062 -4.15876 1.20247 1.55845 1.63362 2.02441 2.47295 2.55968 2.96720 3.28395 3.32829 3.34592 3.85007 3.91359 4.27661 4.33530 4.40937 4.64403 4.67215 4.91389 4.94789 4.98429 5.01246 5.25248 5.31677 5.33175 5.41979 5.44455 5.53880 5.61789 5.71541 5.75342 5.81562 6.01113 6.02277 6.03738 6.22901 6.31458 6.51190 6.52284 6.57907 6.67379 6.70344 6.85750 6.93673 7.11658 7.48419 7.62587 7.76686 7.79594 8.02798 8.22566 8.89448 9.48442 11.00413 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026104 B = 0.001955 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.356164 B =14320.548421 C =14806.400491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.105 4.105 3 C -0.200 4.200 4 C 0.009 3.991 5 N -0.424 5.424 6 C 0.066 3.934 7 C -0.051 4.051 8 C 0.595 3.405 9 O -0.503 6.503 10 N -0.659 5.659 11 C 0.171 3.829 12 C -0.167 4.167 13 C -0.064 4.064 14 C -0.220 4.220 15 C 0.163 3.837 16 O -0.314 6.314 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.183 4.183 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.168 0.832 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.412 0.588 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.048 19.849 12.732 29.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.225 4.225 4 C -0.124 4.124 5 N -0.100 5.100 6 C -0.075 4.075 7 C -0.164 4.164 8 C 0.381 3.619 9 O -0.376 6.376 10 N -0.305 5.305 11 C 0.078 3.922 12 C -0.187 4.187 13 C -0.082 4.082 14 C -0.239 4.239 15 C 0.115 3.885 16 O -0.227 6.227 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.204 4.204 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.249 0.751 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.997 19.333 13.160 29.510 hybrid contribution -0.142 -0.866 -0.330 0.937 sum 17.856 18.467 12.830 28.714 Atomic orbital electron populations 1.20248 0.89527 1.02469 1.02289 1.19816 0.95438 0.90829 1.05172 1.20707 0.91640 0.98564 1.11545 1.21906 0.99501 0.82303 1.08700 1.43812 1.04838 1.06372 1.54954 1.22170 0.85972 0.95573 1.03795 1.19842 0.84273 0.92872 1.19427 1.17150 0.77398 0.83826 0.83561 1.90869 1.47656 1.67866 1.31187 1.43460 1.62813 1.13779 1.10414 1.17275 0.95471 0.83396 0.96083 1.20963 1.04685 0.93151 0.99918 1.20796 0.95206 0.95100 0.97123 1.21424 1.04957 1.01242 0.96272 1.18810 0.89816 0.92376 0.87510 1.86168 1.61175 1.33933 1.41426 1.23365 0.97282 0.77734 1.02532 1.19123 0.94234 0.96989 0.90817 1.20929 1.31218 0.96951 1.07444 0.92385 1.24991 0.95994 0.98021 0.95193 1.69963 1.36348 1.36219 1.10220 0.86539 0.78920 0.84292 0.77571 1.20076 1.21121 1.20100 1.20031 1.02857 0.95796 1.01732 0.91299 0.91179 0.92070 0.83948 0.81439 0.90232 0.89127 0.89732 0.75139 0.85071 0.85656 0.84946 0.93000 0.92975 0.95374 0.95396 0.92640 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.20 36.01 0.37 -0.47 16 2 C -0.10 -1.08 6.21 -104.15 -0.65 -1.73 16 3 C -0.20 -1.68 10.76 -39.98 -0.43 -2.11 16 4 C 0.01 0.06 11.38 -16.90 -0.19 -0.13 16 5 N -0.42 -3.46 3.16 -120.23 -0.38 -3.84 16 6 C 0.07 0.34 10.95 59.85 0.66 0.99 16 7 C -0.05 -0.55 6.63 -81.99 -0.54 -1.09 16 8 C 0.60 7.35 6.46 -12.87 -0.08 7.27 16 9 O -0.50 -7.90 14.62 5.19 0.08 -7.82 16 10 N -0.66 -7.31 5.32 -11.07 -0.06 -7.37 16 11 C 0.17 2.34 6.27 -83.74 -0.52 1.82 16 12 C -0.17 -2.35 8.68 -39.36 -0.34 -2.69 16 13 C -0.06 -0.88 10.03 -39.63 -0.40 -1.28 16 14 C -0.22 -3.45 9.04 -39.39 -0.36 -3.81 16 15 C 0.16 2.81 6.68 -39.25 -0.26 2.55 16 16 O -0.31 -6.37 10.13 -19.44 -0.20 -6.57 16 17 C 0.06 1.38 4.68 37.16 0.17 1.55 16 18 C 0.03 0.66 5.34 -27.89 -0.15 0.52 16 19 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 23 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C -0.18 -2.75 9.91 -39.24 -0.39 -3.14 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.63 7.96 -51.93 -0.41 0.22 16 31 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.17 0.63 8.06 -52.49 -0.42 0.20 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.52 7.75 -51.93 -0.40 0.11 16 36 H 0.41 3.49 8.81 -40.82 -0.36 3.13 16 37 H 0.13 1.83 6.32 -52.48 -0.33 1.50 16 38 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.13 2.02 6.29 -52.49 -0.33 1.69 16 40 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 41 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -33.64 384.77 -8.98 -42.62 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.40 Total: 1.69 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.53 Total: -15.07 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.30 Total: -36.83 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.12 Total: -14.39 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.64 -8.98 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189064519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.648 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds