Wall clock time and date at job start Tue Mar 31 2020 15:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39833 * 126.45291 * 2 1 4 4 C 1.35459 * 107.86702 * 180.02562 * 3 2 1 5 5 N 1.35545 * 108.86983 * 359.74966 * 4 3 2 6 6 C 1.46508 * 125.67730 * 180.24840 * 5 4 3 7 7 C 1.37655 * 108.64423 * 0.40401 * 5 4 3 8 8 C 1.46643 * 126.23223 * 179.86777 * 7 5 4 9 9 O 1.21700 * 120.00269 * 94.13141 * 8 7 5 10 10 N 1.34775 * 119.99614 * 274.12399 * 8 7 5 11 11 C 1.39832 * 119.99779 * 184.91947 * 10 8 7 12 12 C 1.38957 * 120.04802 * 323.43864 * 11 10 8 13 13 C 1.38114 * 120.04031 * 179.97438 * 12 11 10 14 14 C 1.38221 * 120.12524 * 359.72432 * 13 12 11 15 15 C 1.38763 * 120.08620 * 0.55214 * 14 13 12 16 16 O 1.35904 * 120.01599 * 179.72026 * 15 14 13 17 17 C 1.42901 * 117.00145 * 359.72970 * 16 15 14 18 18 C 1.52997 * 109.47315 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47171 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99916 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00081 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00218 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00232 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46979 * 59.99872 * 23 21 19 25 25 H 1.48497 * 109.47206 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47033 * 300.00323 * 23 21 19 27 27 C 1.38622 * 119.96547 * 359.44852 * 15 14 13 28 28 H 1.09003 * 109.46704 * 269.99638 * 1 2 3 29 29 H 1.08993 * 109.47417 * 29.99585 * 1 2 3 30 30 H 1.08992 * 109.46766 * 150.00429 * 1 2 3 31 31 H 1.08006 * 126.07194 * 359.97438 * 3 2 1 32 32 H 1.07999 * 125.56266 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47126 * 272.10581 * 6 5 4 34 34 H 1.09000 * 109.46692 * 32.10816 * 6 5 4 35 35 H 1.08999 * 109.46697 * 152.10720 * 6 5 4 36 36 H 0.97002 * 120.00185 * 4.92448 * 10 8 7 37 37 H 1.08003 * 119.97367 * 359.95279 * 12 11 10 38 38 H 1.08001 * 119.93637 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.95099 * 180.27398 * 14 13 12 40 40 H 1.08996 * 109.46777 * 299.99891 * 17 16 15 41 41 H 1.09007 * 109.47144 * 59.99410 * 17 16 15 42 42 H 1.09004 * 109.46564 * 299.99325 * 18 17 16 43 43 H 1.08994 * 109.47362 * 59.99278 * 18 17 16 44 44 H 0.96995 * 120.00431 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.06133 * 180.29907 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6930 -0.0006 5 7 3.6285 -0.6624 0.0047 6 6 4.8228 -1.5110 0.0110 7 6 2.3264 -1.1090 -0.0005 8 6 1.8903 -2.5090 -0.0002 9 8 1.6320 -3.0657 1.0508 10 7 1.7753 -3.1792 -1.1638 11 6 1.2619 -4.4799 -1.1737 12 6 1.5582 -5.3528 -0.1340 13 6 1.0506 -6.6373 -0.1437 14 6 0.2423 -7.0559 -1.1839 15 6 -0.0523 -6.1904 -2.2277 16 8 -0.8426 -6.6053 -3.2525 17 6 -1.3305 -7.9472 -3.1933 18 6 -2.1945 -8.2305 -4.4238 19 6 -2.7085 -9.6457 -4.3617 20 1 -2.4455 -10.2796 -3.5277 21 6 -3.5152 -10.1310 -5.3689 22 7 -3.8359 -9.3590 -6.3842 23 14 -4.1518 -11.8855 -5.2923 24 1 -4.9661 -12.0634 -4.0633 25 1 -4.9905 -12.1604 -6.4865 26 1 -3.0042 -12.8277 -5.2663 27 6 0.4552 -4.9004 -2.2217 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3632 -0.8900 -0.5137 31 1 2.0135 2.1550 -0.0004 32 1 4.4972 1.3255 -0.0003 33 1 5.1436 -1.6946 -1.0144 34 1 5.6217 -1.0096 0.5574 35 1 4.5917 -2.4599 0.4949 36 1 2.0488 -2.7594 -1.9944 37 1 2.1862 -5.0268 0.6819 38 1 1.2823 -7.3145 0.6650 39 1 -0.1567 -8.0595 -1.1864 40 1 -0.4886 -8.6393 -3.1738 41 1 -1.9284 -8.0769 -2.2912 42 1 -3.0364 -7.5383 -4.4436 43 1 -1.5962 -8.1008 -5.3256 44 1 -4.4038 -9.7002 -7.0926 45 1 0.2229 -4.2239 -3.0309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189064519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:53 Heat of formation + Delta-G solvation = -22.404871 kcal Electronic energy + Delta-G solvation = -26347.749024 eV Core-core repulsion = 22523.517183 eV Total energy + Delta-G solvation = -3824.231841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52548 -41.43031 -40.40217 -38.37795 -35.83636 -35.39004 -34.67713 -32.61773 -31.71785 -30.97500 -30.25530 -28.95135 -27.03848 -26.19799 -24.68875 -23.84187 -23.25272 -21.97128 -21.18830 -20.54419 -19.58489 -18.65381 -18.33875 -17.44529 -17.06157 -16.99438 -16.82674 -16.81185 -16.41161 -16.07909 -15.76201 -15.33801 -14.68888 -14.53682 -14.36984 -14.30379 -14.26242 -14.21978 -14.03003 -13.68021 -13.32310 -13.26716 -12.99995 -12.89531 -12.86912 -12.67837 -12.57516 -12.48759 -12.14797 -11.76213 -11.59068 -11.47150 -11.37774 -11.16962 -10.60602 -9.56982 -9.49446 -9.16706 -9.05138 -8.25836 -6.39331 0.08476 0.41875 0.86267 1.12029 1.41588 1.45375 1.53207 1.64809 1.91614 2.16457 2.33244 2.55147 2.73539 3.08565 3.52445 3.84371 3.85389 4.11455 4.15596 4.20038 4.20765 4.28707 4.29615 4.33133 4.37416 4.39539 4.48653 4.60031 4.62660 4.75564 4.76845 4.82439 5.08456 5.10432 5.13928 5.17117 5.31024 5.35856 5.39934 5.45553 5.48216 5.67361 5.81617 5.87039 6.00752 6.07775 6.17303 6.34112 6.50164 6.75276 6.82385 7.30618 8.86925 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026104 B = 0.001955 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.356164 B =14320.548421 C =14806.400491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.121 4.121 3 C -0.217 4.217 4 C 0.026 3.974 5 N -0.424 5.424 6 C 0.060 3.940 7 C -0.082 4.082 8 C 0.603 3.397 9 O -0.542 6.542 10 N -0.648 5.648 11 C 0.175 3.825 12 C -0.167 4.167 13 C -0.058 4.058 14 C -0.226 4.226 15 C 0.133 3.867 16 O -0.336 6.336 17 C 0.083 3.917 18 C 0.028 3.972 19 C -0.546 4.546 20 H 0.071 0.929 21 C 0.001 3.999 22 N -0.930 5.930 23 Si 0.975 3.025 24 H -0.265 1.265 25 H -0.283 1.283 26 H -0.263 1.263 27 C -0.185 4.185 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.160 0.840 32 H 0.207 0.793 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.425 0.575 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.064 0.936 41 H 0.061 0.939 42 H -0.002 1.002 43 H 0.000 1.000 44 H 0.267 0.733 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.908 20.219 13.983 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C -0.241 4.241 4 C -0.108 4.108 5 N -0.099 5.099 6 C -0.080 4.080 7 C -0.195 4.195 8 C 0.390 3.610 9 O -0.417 6.417 10 N -0.293 5.293 11 C 0.081 3.919 12 C -0.187 4.187 13 C -0.076 4.076 14 C -0.245 4.245 15 C 0.086 3.914 16 O -0.250 6.250 17 C 0.009 3.991 18 C -0.009 4.009 19 C -0.584 4.584 20 H 0.089 0.911 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.208 1.208 26 H -0.188 1.188 27 C -0.206 4.206 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.177 0.823 32 H 0.224 0.776 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.264 0.736 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.075 0.925 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 19.892 19.721 14.407 31.498 hybrid contribution -0.611 -0.808 -0.673 1.216 sum 19.281 18.913 13.734 30.300 Atomic orbital electron populations 1.20249 0.89733 1.02550 1.01984 1.20096 0.95785 0.91686 1.05414 1.21001 0.92007 0.98889 1.12175 1.22555 1.00407 0.82023 1.05855 1.44053 1.04581 1.07143 1.54110 1.22413 0.85475 0.94966 1.05191 1.19637 0.85895 0.91745 1.22212 1.17393 0.76276 0.84376 0.82961 1.90837 1.49467 1.68939 1.32483 1.43404 1.62058 1.12854 1.11013 1.17314 0.94840 0.84352 0.95438 1.21159 1.04377 0.93354 0.99847 1.21085 0.93996 0.95404 0.97141 1.21531 1.05406 1.01233 0.96343 1.19080 0.90893 0.93676 0.87728 1.86084 1.62519 1.33165 1.43214 1.22921 0.97090 0.78912 1.00209 1.18965 0.93635 0.96217 0.92106 1.21371 1.31329 0.97740 1.07952 0.91053 1.26035 0.96144 1.02919 0.94648 1.70109 1.37159 1.38567 1.11119 0.85349 0.78556 0.78368 0.77868 1.18928 1.20845 1.18811 1.20134 1.02768 0.95259 1.02398 0.91798 0.89478 0.93585 0.82265 0.77611 0.88591 0.86380 0.91177 0.73590 0.84715 0.82760 0.84590 0.91750 0.92056 0.98341 0.98149 0.92463 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 10.20 71.24 0.73 -0.95 16 2 C -0.12 -2.42 6.21 -19.56 -0.12 -2.54 16 3 C -0.22 -3.19 10.76 22.01 0.24 -2.95 16 4 C 0.03 0.29 11.38 83.48 0.95 1.24 16 5 N -0.42 -6.03 3.16 -534.30 -1.69 -7.72 16 6 C 0.06 0.47 10.95 127.77 1.40 1.86 16 7 C -0.08 -1.70 6.63 40.34 0.27 -1.43 16 8 C 0.60 14.78 6.46 86.44 0.56 15.34 16 9 O -0.54 -17.11 14.62 -4.35 -0.06 -17.18 16 10 N -0.65 -14.09 5.32 -307.15 -1.63 -15.73 16 11 C 0.17 4.71 6.27 38.17 0.24 4.94 16 12 C -0.17 -4.55 8.68 22.41 0.19 -4.36 16 13 C -0.06 -1.52 10.03 22.24 0.22 -1.30 16 14 C -0.23 -6.95 9.04 22.39 0.20 -6.75 16 15 C 0.13 4.63 6.68 22.49 0.15 4.78 16 16 O -0.34 -14.02 10.13 -92.46 -0.94 -14.96 16 17 C 0.08 3.58 4.68 71.98 0.34 3.92 16 18 C 0.03 1.52 5.34 29.85 0.16 1.68 16 19 C -0.55 -30.64 9.11 25.60 0.23 -30.41 16 20 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 21 C 0.00 0.07 5.46 84.65 0.46 0.53 16 22 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 23 Si 0.98 43.37 29.54 68.60 2.03 45.39 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 C -0.18 -5.56 9.91 22.49 0.22 -5.33 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 0.98 7.96 -2.39 -0.02 0.96 16 31 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.21 0.57 8.06 -2.91 -0.02 0.55 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.12 0.26 8.14 -2.39 -0.02 0.25 16 35 H 0.07 0.77 7.75 -2.39 -0.02 0.75 16 36 H 0.43 6.92 8.81 -92.71 -0.82 6.10 16 37 H 0.14 3.64 6.32 -2.91 -0.02 3.62 16 38 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.14 4.03 6.29 -2.91 -0.02 4.01 16 40 H 0.06 2.59 7.67 -2.39 -0.02 2.57 16 41 H 0.06 2.50 7.65 -2.38 -0.02 2.48 16 42 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 45 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -74.65 384.77 4.62 -70.03 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.19 Total: 18.06 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 6.44 Total: -21.74 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -3.04 Total: -79.61 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.00 Total: -32.13 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -74.65 4.62 -70.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189064519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.627 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds