Wall clock time and date at job start Tue Mar 31 2020 14:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38256 * 120.00341 * 2 1 4 4 C 1.38210 * 119.99969 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99834 * 179.97438 * 4 3 2 6 6 F 1.39896 * 109.47435 * 89.99389 * 5 4 3 7 7 F 1.39902 * 109.46962 * 209.99647 * 5 4 3 8 8 F 1.39906 * 109.47155 * 329.99640 * 5 4 3 9 9 C 1.38250 * 120.00326 * 359.97438 * 4 3 2 10 10 C 1.38220 * 119.99981 * 359.95908 * 9 4 3 11 11 C 1.38216 * 119.99689 * 179.97438 * 2 1 3 12 12 C 1.50703 * 119.99883 * 0.06946 * 11 2 1 13 13 N 1.46899 * 109.47208 * 285.66815 * 12 11 2 14 14 C 1.46896 * 111.00281 * 288.49400 * 13 12 11 15 15 C 1.53236 * 109.34135 * 172.74486 * 14 13 12 16 16 N 1.47073 * 108.52194 * 53.83263 * 15 14 13 17 17 C 1.36932 * 120.88610 * 128.79629 * 16 15 14 18 18 H 1.08001 * 120.00258 * 206.70464 * 17 16 15 19 19 C 1.38815 * 119.99813 * 26.70101 * 17 16 15 20 20 N 1.31614 * 120.00230 * 28.61680 * 19 17 16 21 21 Si 1.86805 * 119.99849 * 208.61667 * 19 17 16 22 22 H 1.48497 * 109.47100 * 94.99067 * 21 19 17 23 23 H 1.48496 * 109.46954 * 214.99606 * 21 19 17 24 24 H 1.48504 * 109.46878 * 334.98937 * 21 19 17 25 25 C 1.47083 * 118.23360 * 308.81178 * 16 15 14 26 26 C 1.46901 * 111.00131 * 164.18499 * 13 12 11 27 27 H 1.09003 * 109.46821 * 95.08427 * 1 2 3 28 28 H 1.08992 * 109.47419 * 215.08937 * 1 2 3 29 29 H 1.09003 * 109.46852 * 335.08822 * 1 2 3 30 30 H 1.08003 * 119.99691 * 0.27331 * 3 2 1 31 31 H 1.08004 * 120.00506 * 179.97438 * 9 4 3 32 32 H 1.07998 * 120.00765 * 179.97438 * 10 9 4 33 33 H 1.08999 * 109.46989 * 45.66734 * 12 11 2 34 34 H 1.08996 * 109.47136 * 165.67094 * 12 11 2 35 35 H 1.08999 * 109.49012 * 292.70574 * 14 13 12 36 36 H 1.09006 * 109.49550 * 52.78315 * 14 13 12 37 37 H 1.09001 * 109.63032 * 294.11266 * 15 14 13 38 38 H 1.09007 * 109.78674 * 173.63478 * 15 14 13 39 39 H 0.96998 * 119.99574 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.62888 * 291.47592 * 25 16 15 41 41 H 1.08997 * 109.78830 * 170.99501 * 25 16 15 42 42 H 1.08996 * 109.49485 * 307.21784 * 26 13 12 43 43 H 1.09000 * 109.48577 * 67.27219 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3341 2.5023 -0.0011 6 9 4.5677 2.9065 1.3176 7 9 5.5563 2.3347 -0.6610 8 9 3.5778 3.4772 -0.6606 9 6 4.2718 -0.0001 -0.0005 10 6 3.5807 -1.1971 0.0009 11 6 2.1981 -1.1970 0.0005 12 6 1.4445 -2.5021 -0.0005 13 7 0.8743 -2.7393 1.3324 14 6 1.9250 -3.0759 2.3023 15 6 1.3176 -3.1370 3.7078 16 7 0.1748 -4.0624 3.6830 17 6 0.0705 -5.0754 4.5984 18 1 -0.4769 -5.9728 4.3509 19 6 0.6686 -4.9488 5.8447 20 7 0.8320 -3.7568 6.3783 21 14 1.2417 -6.4703 6.7646 22 1 2.6826 -6.7015 6.4897 23 1 1.0414 -6.2721 8.2225 24 1 0.4565 -7.6470 6.3126 25 6 -0.8531 -3.8711 2.6485 26 6 -0.1604 -3.7810 1.2846 27 1 -0.3633 -0.0911 -1.0237 28 1 -0.3634 -0.8408 0.5907 29 1 -0.3633 0.9321 0.4329 30 1 1.6584 2.1326 0.0045 31 1 5.3518 -0.0002 -0.0014 32 1 4.1205 -2.1325 0.0004 33 1 0.6417 -2.4575 -0.7364 34 1 2.1253 -3.3146 -0.2542 35 1 2.3561 -4.0446 2.0498 36 1 2.7030 -2.3129 2.2751 37 1 0.9787 -2.1442 4.0037 38 1 2.0638 -3.4956 4.4169 39 1 1.2502 -3.6684 7.2490 40 1 -1.4008 -2.9490 2.8426 41 1 -1.5433 -4.7147 2.6536 42 1 -0.8947 -3.5295 0.5195 43 1 0.2998 -4.7399 1.0460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191062949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:18 Heat of formation + Delta-G solvation = -97.270233 kcal Electronic energy + Delta-G solvation = -28452.614459 eV Core-core repulsion = 24083.279472 eV Total energy + Delta-G solvation = -4369.334987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.27722 -47.80845 -47.72562 -40.01048 -37.94642 -34.81662 -33.13427 -32.24651 -30.99872 -30.03785 -28.05803 -27.10094 -25.89536 -24.03625 -22.69880 -22.42618 -22.23615 -20.63949 -19.17391 -18.60076 -18.50346 -18.11692 -16.84093 -15.83900 -15.74441 -15.32745 -14.69480 -14.60184 -14.54900 -14.46892 -14.21373 -14.18515 -13.94773 -13.90452 -13.70951 -13.63885 -13.49601 -13.26126 -13.01046 -12.95639 -12.28220 -12.19797 -12.13470 -11.80754 -11.49723 -11.32111 -11.15904 -11.08257 -10.75106 -10.48182 -10.38402 -10.15088 -9.78986 -9.67213 -9.12164 -8.80653 -8.47415 -7.93543 -6.74523 -5.84557 -3.18125 0.82689 1.18660 2.54871 3.31804 3.36697 3.45533 3.46467 3.60623 3.90645 4.29078 4.36554 4.50210 4.66825 4.71470 4.79479 5.09706 5.15403 5.28078 5.37906 5.40281 5.43440 5.55496 5.66573 5.76358 5.80670 5.84017 5.87319 6.04826 6.06974 6.09479 6.16989 6.23918 6.31511 6.47772 6.52198 6.62988 6.71536 6.87518 7.09828 7.46384 7.50335 7.59296 7.81724 8.37711 9.15134 9.81694 10.41420 11.23620 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.003007 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.706290 B = 9308.953816 C =10063.355000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.058 4.058 3 C -0.076 4.076 4 C -0.186 4.186 5 C 0.509 3.491 6 F -0.177 7.177 7 F -0.180 7.180 8 F -0.180 7.180 9 C -0.079 4.079 10 C -0.112 4.112 11 C -0.038 4.038 12 C 0.085 3.915 13 N -0.525 5.525 14 C 0.037 3.963 15 C 0.180 3.820 16 N -0.592 5.592 17 C -0.264 4.264 18 H 0.066 0.934 19 C 0.010 3.990 20 N -0.887 5.887 21 Si 0.890 3.110 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.149 3.851 26 C 0.044 3.956 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.027 0.973 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.254 0.746 40 H 0.025 0.975 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 9.675 -16.954 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.058 4.058 3 C -0.094 4.094 4 C -0.187 4.187 5 C 0.455 3.545 6 F -0.158 7.158 7 F -0.161 7.161 8 F -0.161 7.161 9 C -0.098 4.098 10 C -0.131 4.131 11 C -0.038 4.038 12 C -0.043 4.043 13 N -0.249 5.249 14 C -0.092 4.092 15 C 0.054 3.946 16 N -0.315 5.315 17 C -0.393 4.393 18 H 0.084 0.916 19 C -0.191 4.191 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.023 3.977 26 C -0.086 4.086 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.386 10.163 -16.607 19.958 hybrid contribution 1.087 -1.133 0.343 1.607 sum 5.473 9.030 -16.264 19.391 Atomic orbital electron populations 1.20928 0.90047 1.04529 1.02302 1.19727 0.96926 0.91359 0.97800 1.20812 0.91898 0.98945 0.97761 1.19857 0.94969 0.91793 1.12093 1.18355 0.77262 0.85145 0.73736 1.93235 1.94681 1.91819 1.36058 1.93174 1.46193 1.95574 1.81203 1.93177 1.75943 1.65782 1.81208 1.20812 1.00194 0.91054 0.97699 1.21063 0.93701 0.97807 1.00493 1.19979 0.93228 0.95205 0.95417 1.21109 0.97643 0.92493 0.93024 1.61946 1.13527 1.44785 1.04682 1.22873 0.93006 0.97732 0.95584 1.20722 0.90041 0.93319 0.90514 1.44135 1.20077 1.34456 1.32882 1.19107 1.33622 0.93794 0.92744 0.91630 1.24912 1.02528 0.96041 0.95569 1.70203 1.44579 1.21786 1.16348 0.86473 0.79179 0.83591 0.78847 1.21492 1.21863 1.20319 1.20957 0.91185 0.98608 0.86986 1.22676 0.93820 0.92001 1.00060 0.91536 0.88460 0.91749 0.84984 0.85038 0.85114 0.89941 0.94120 0.95478 0.92017 0.95428 0.90776 0.93633 0.95701 0.92529 0.91869 0.95214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.23 36.01 0.33 -0.98 16 2 C -0.06 -0.69 5.88 -104.62 -0.62 -1.31 16 3 C -0.08 -0.88 9.03 -39.59 -0.36 -1.24 16 4 C -0.19 -2.18 5.45 -104.63 -0.57 -2.75 16 5 C 0.51 5.84 3.36 36.01 0.12 5.97 16 6 F -0.18 -2.21 17.30 2.25 0.04 -2.18 16 7 F -0.18 -2.02 16.46 2.25 0.04 -1.99 16 8 F -0.18 -2.03 16.47 2.25 0.04 -2.00 16 9 C -0.08 -0.89 9.40 -39.58 -0.37 -1.26 16 10 C -0.11 -1.29 9.02 -39.58 -0.36 -1.65 16 11 C -0.04 -0.46 4.64 -104.62 -0.49 -0.95 16 12 C 0.09 1.07 4.29 -4.97 -0.02 1.05 16 13 N -0.52 -8.36 3.45 -235.77 -0.81 -9.17 16 14 C 0.04 0.68 5.46 -3.70 -0.02 0.66 16 15 C 0.18 4.22 5.54 -3.61 -0.02 4.20 16 16 N -0.59 -14.59 3.03 -172.02 -0.52 -15.11 16 17 C -0.26 -7.17 9.53 -15.06 -0.14 -7.31 16 18 H 0.07 1.76 7.97 -52.49 -0.42 1.35 16 19 C 0.01 0.27 4.59 -17.43 -0.08 0.19 16 20 N -0.89 -25.73 11.98 55.49 0.66 -25.06 16 21 Si 0.89 21.39 29.64 -169.99 -5.04 16.35 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 C 0.15 3.02 6.69 -3.60 -0.02 3.00 16 26 C 0.04 0.71 5.60 -3.70 -0.02 0.69 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.10 1.23 6.31 -51.93 -0.33 0.90 16 29 H 0.06 0.64 8.05 -51.93 -0.42 0.23 16 30 H 0.13 1.33 7.61 -52.48 -0.40 0.94 16 31 H 0.13 1.24 7.60 -52.48 -0.40 0.85 16 32 H 0.13 1.31 8.00 -52.49 -0.42 0.89 16 33 H 0.08 0.91 7.37 -51.93 -0.38 0.53 16 34 H 0.04 0.50 7.86 -51.93 -0.41 0.09 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 1.07 6.79 -51.93 -0.35 0.72 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.93 6.50 -51.93 -0.34 1.59 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 42 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -29.34 356.36 -8.80 -38.14 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.94 Total: -2.66 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.63 Total: -1.69 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.67 Total: -49.35 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.11 Total: -6.16 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.04 Total: 16.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.34 -8.80 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191062949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.130 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds