Wall clock time and date at job start Tue Mar 31 2020 14:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38256 * 120.00341 * 2 1 4 4 C 1.38210 * 119.99969 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99834 * 179.97438 * 4 3 2 6 6 F 1.39896 * 109.47435 * 89.99389 * 5 4 3 7 7 F 1.39902 * 109.46962 * 209.99647 * 5 4 3 8 8 F 1.39906 * 109.47155 * 329.99640 * 5 4 3 9 9 C 1.38250 * 120.00326 * 359.97438 * 4 3 2 10 10 C 1.38220 * 119.99981 * 359.95908 * 9 4 3 11 11 C 1.38216 * 119.99689 * 179.97438 * 2 1 3 12 12 C 1.50703 * 119.99883 * 0.06946 * 11 2 1 13 13 N 1.46899 * 109.47208 * 285.66815 * 12 11 2 14 14 C 1.46896 * 111.00281 * 288.49400 * 13 12 11 15 15 C 1.53236 * 109.34135 * 172.74486 * 14 13 12 16 16 N 1.47073 * 108.52194 * 53.83263 * 15 14 13 17 17 C 1.36932 * 120.88610 * 128.79629 * 16 15 14 18 18 H 1.08001 * 120.00258 * 206.70464 * 17 16 15 19 19 C 1.38815 * 119.99813 * 26.70101 * 17 16 15 20 20 N 1.31614 * 120.00230 * 28.61680 * 19 17 16 21 21 Si 1.86805 * 119.99849 * 208.61667 * 19 17 16 22 22 H 1.48497 * 109.47100 * 94.99067 * 21 19 17 23 23 H 1.48496 * 109.46954 * 214.99606 * 21 19 17 24 24 H 1.48504 * 109.46878 * 334.98937 * 21 19 17 25 25 C 1.47083 * 118.23360 * 308.81178 * 16 15 14 26 26 C 1.46901 * 111.00131 * 164.18499 * 13 12 11 27 27 H 1.09003 * 109.46821 * 95.08427 * 1 2 3 28 28 H 1.08992 * 109.47419 * 215.08937 * 1 2 3 29 29 H 1.09003 * 109.46852 * 335.08822 * 1 2 3 30 30 H 1.08003 * 119.99691 * 0.27331 * 3 2 1 31 31 H 1.08004 * 120.00506 * 179.97438 * 9 4 3 32 32 H 1.07998 * 120.00765 * 179.97438 * 10 9 4 33 33 H 1.08999 * 109.46989 * 45.66734 * 12 11 2 34 34 H 1.08996 * 109.47136 * 165.67094 * 12 11 2 35 35 H 1.08999 * 109.49012 * 292.70574 * 14 13 12 36 36 H 1.09006 * 109.49550 * 52.78315 * 14 13 12 37 37 H 1.09001 * 109.63032 * 294.11266 * 15 14 13 38 38 H 1.09007 * 109.78674 * 173.63478 * 15 14 13 39 39 H 0.96998 * 119.99574 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.62888 * 291.47592 * 25 16 15 41 41 H 1.08997 * 109.78830 * 170.99501 * 25 16 15 42 42 H 1.08996 * 109.49485 * 307.21784 * 26 13 12 43 43 H 1.09000 * 109.48577 * 67.27219 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3341 2.5023 -0.0011 6 9 4.5677 2.9065 1.3176 7 9 5.5563 2.3347 -0.6610 8 9 3.5778 3.4772 -0.6606 9 6 4.2718 -0.0001 -0.0005 10 6 3.5807 -1.1971 0.0009 11 6 2.1981 -1.1970 0.0005 12 6 1.4445 -2.5021 -0.0005 13 7 0.8743 -2.7393 1.3324 14 6 1.9250 -3.0759 2.3023 15 6 1.3176 -3.1370 3.7078 16 7 0.1748 -4.0624 3.6830 17 6 0.0705 -5.0754 4.5984 18 1 -0.4769 -5.9728 4.3509 19 6 0.6686 -4.9488 5.8447 20 7 0.8320 -3.7568 6.3783 21 14 1.2417 -6.4703 6.7646 22 1 2.6826 -6.7015 6.4897 23 1 1.0414 -6.2721 8.2225 24 1 0.4565 -7.6470 6.3126 25 6 -0.8531 -3.8711 2.6485 26 6 -0.1604 -3.7810 1.2846 27 1 -0.3633 -0.0911 -1.0237 28 1 -0.3634 -0.8408 0.5907 29 1 -0.3633 0.9321 0.4329 30 1 1.6584 2.1326 0.0045 31 1 5.3518 -0.0002 -0.0014 32 1 4.1205 -2.1325 0.0004 33 1 0.6417 -2.4575 -0.7364 34 1 2.1253 -3.3146 -0.2542 35 1 2.3561 -4.0446 2.0498 36 1 2.7030 -2.3129 2.2751 37 1 0.9787 -2.1442 4.0037 38 1 2.0638 -3.4956 4.4169 39 1 1.2502 -3.6684 7.2490 40 1 -1.4008 -2.9490 2.8426 41 1 -1.5433 -4.7147 2.6536 42 1 -0.8947 -3.5295 0.5195 43 1 0.2998 -4.7399 1.0460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191062949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:17 Heat of formation + Delta-G solvation = -112.009241 kcal Electronic energy + Delta-G solvation = -28453.253590 eV Core-core repulsion = 24083.279472 eV Total energy + Delta-G solvation = -4369.974118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.19200 -48.70512 -48.66472 -40.96053 -39.35273 -36.36635 -34.30372 -33.43791 -32.53377 -31.65534 -29.36816 -27.96365 -27.32814 -25.40921 -24.28548 -23.84025 -23.18295 -21.60921 -20.80857 -19.52152 -19.41963 -18.99950 -18.70411 -17.01355 -16.79090 -16.74328 -16.24899 -15.68958 -15.59099 -15.43900 -15.37860 -15.28947 -15.11253 -15.09012 -14.95164 -14.87053 -14.82370 -14.48195 -14.31138 -14.06856 -13.40185 -13.28214 -13.14146 -13.05133 -12.98355 -12.84636 -12.60108 -12.36725 -12.11144 -12.08707 -12.00609 -11.81360 -11.57040 -11.39910 -10.53800 -10.03417 -9.68685 -9.24829 -8.72131 -7.91967 -5.28640 -0.07807 0.32061 1.45023 1.47999 1.56868 1.64394 2.39606 2.51174 2.70853 3.01450 3.12969 3.19901 3.41335 3.68833 3.77916 3.83776 3.90652 4.20818 4.27269 4.31248 4.36842 4.45638 4.53529 4.62353 4.67333 4.71384 4.76468 4.86322 4.92341 4.94390 4.98140 5.03385 5.16828 5.18516 5.26383 5.32865 5.44367 5.58873 5.63468 5.66432 5.84799 6.17776 6.25825 6.34398 7.10629 7.83863 8.39364 9.14160 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.003007 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.706290 B = 9308.953816 C =10063.355000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.066 4.066 3 C -0.084 4.084 4 C -0.193 4.193 5 C 0.512 3.488 6 F -0.184 7.184 7 F -0.178 7.178 8 F -0.179 7.179 9 C -0.084 4.084 10 C -0.115 4.115 11 C -0.051 4.051 12 C 0.091 3.909 13 N -0.530 5.530 14 C 0.058 3.942 15 C 0.189 3.811 16 N -0.611 5.611 17 C -0.271 4.271 18 H 0.066 0.934 19 C -0.042 4.042 20 N -0.924 5.924 21 Si 0.955 3.045 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.266 1.266 25 C 0.143 3.857 26 C 0.056 3.944 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.025 0.975 36 H 0.072 0.928 37 H -0.004 1.004 38 H 0.039 0.961 39 H 0.250 0.750 40 H 0.015 0.985 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 9.172 -19.065 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.066 4.066 3 C -0.102 4.102 4 C -0.194 4.194 5 C 0.458 3.542 6 F -0.166 7.166 7 F -0.160 7.160 8 F -0.160 7.160 9 C -0.102 4.102 10 C -0.134 4.134 11 C -0.052 4.052 12 C -0.036 4.036 13 N -0.255 5.255 14 C -0.072 4.072 15 C 0.063 3.937 16 N -0.335 5.335 17 C -0.401 4.401 18 H 0.084 0.916 19 C -0.239 4.239 20 N -0.569 5.569 21 Si 0.783 3.217 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.191 1.191 25 C 0.018 3.982 26 C -0.072 4.072 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.014 0.986 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.512 9.654 -18.761 21.576 hybrid contribution 0.992 -0.902 0.955 1.646 sum 5.504 8.752 -17.806 20.590 Atomic orbital electron populations 1.20906 0.89258 1.03977 1.03295 1.19927 0.97626 0.91438 0.97651 1.20991 0.92037 0.99465 0.97715 1.19985 0.95216 0.92017 1.12229 1.18323 0.77304 0.85135 0.73401 1.93220 1.94743 1.91912 1.36707 1.93176 1.46106 1.95561 1.81107 1.93177 1.75921 1.65778 1.81133 1.21037 1.01094 0.90826 0.97269 1.21275 0.93623 0.98520 0.99938 1.20056 0.93652 0.95174 0.96323 1.21133 0.98559 0.92844 0.91052 1.61830 1.12917 1.44426 1.06319 1.22467 0.93417 0.98040 0.93256 1.20478 0.89132 0.91121 0.92992 1.44425 1.21582 1.34168 1.33309 1.19436 1.33022 0.94485 0.93187 0.91583 1.25645 1.03113 0.98497 0.96602 1.70320 1.46054 1.23840 1.16693 0.85450 0.78544 0.80577 0.77144 1.21379 1.22349 1.19088 1.21137 0.90815 0.98161 0.88099 1.22500 0.94408 0.92219 0.98117 0.89455 0.90142 0.91381 0.83914 0.83548 0.83684 0.87685 0.93156 0.95702 0.90919 0.98594 0.94220 0.94101 0.96707 0.92229 0.88021 0.95387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 9.23 71.24 0.66 -1.62 16 2 C -0.07 -1.45 5.88 -19.86 -0.12 -1.57 16 3 C -0.08 -1.82 9.03 22.27 0.20 -1.62 16 4 C -0.19 -4.24 5.45 -19.87 -0.11 -4.35 16 5 C 0.51 11.13 3.36 71.24 0.24 11.37 16 6 F -0.18 -4.47 17.30 44.97 0.78 -3.69 16 7 F -0.18 -3.75 16.46 44.97 0.74 -3.01 16 8 F -0.18 -3.82 16.47 44.97 0.74 -3.08 16 9 C -0.08 -1.73 9.40 22.27 0.21 -1.52 16 10 C -0.12 -2.38 9.02 22.27 0.20 -2.18 16 11 C -0.05 -1.14 4.64 -19.86 -0.09 -1.24 16 12 C 0.09 2.00 4.29 85.56 0.37 2.37 16 13 N -0.53 -15.82 3.45 -899.84 -3.11 -18.93 16 14 C 0.06 2.08 5.46 86.38 0.47 2.55 16 15 C 0.19 9.09 5.54 86.35 0.48 9.57 16 16 N -0.61 -30.45 3.03 -698.15 -2.11 -32.56 16 17 C -0.27 -14.92 9.53 84.04 0.80 -14.12 16 18 H 0.07 3.55 7.97 -2.91 -0.02 3.53 16 19 C -0.04 -2.33 4.59 84.86 0.39 -1.94 16 20 N -0.92 -55.37 11.98 21.65 0.26 -55.11 16 21 Si 0.95 44.63 29.64 68.60 2.03 46.66 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 C 0.14 5.71 6.69 86.35 0.58 6.29 16 26 C 0.06 1.69 5.60 86.38 0.48 2.18 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.85 6.31 -2.39 -0.02 1.84 16 29 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 30 H 0.14 2.67 7.61 -2.91 -0.02 2.65 16 31 H 0.15 2.48 7.60 -2.91 -0.02 2.46 16 32 H 0.15 2.52 8.00 -2.91 -0.02 2.49 16 33 H 0.11 1.87 7.37 -2.39 -0.02 1.85 16 34 H 0.05 1.05 7.86 -2.39 -0.02 1.03 16 35 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 2.45 6.79 -2.38 -0.02 2.44 16 37 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.04 2.14 6.50 -2.38 -0.02 2.13 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 2.29 7.96 -2.39 -0.02 2.27 16 42 H 0.10 2.32 7.93 -2.39 -0.02 2.30 16 43 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -64.31 356.36 5.11 -59.20 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.02 Total: 6.36 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 4.76 Total: 4.17 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -4.96 Total: -106.60 kcal Atomic # 9 Polarization: -12.04 SS G_CDS: 2.26 Total: -9.79 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.31 5.11 -59.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191062949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.812 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds