Wall clock time and date at job start Tue Mar 31 2020 16:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46814 * 2 1 4 4 C 1.37790 * 120.10408 * 264.99750 * 3 2 1 5 5 C 1.38796 * 120.66235 * 179.97438 * 4 3 2 6 6 C 1.36655 * 120.52691 * 0.02562 * 5 4 3 7 7 C 1.39590 * 119.76765 * 359.97438 * 6 5 4 8 8 C 1.46486 * 134.03579 * 179.97438 * 7 6 5 9 9 C 1.50703 * 126.50220 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.46867 * 85.00185 * 9 8 7 11 11 O 1.21281 * 120.00228 * 0.02562 * 10 9 8 12 12 N 1.34785 * 119.99792 * 179.97438 * 10 9 8 13 13 C 1.47576 * 134.49390 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.11846 * 155.36116 * 13 12 10 15 15 O 1.42894 * 113.74258 * 269.15648 * 14 13 12 16 16 C 1.50696 * 113.73834 * 137.95019 * 14 13 12 17 17 H 1.07999 * 120.00319 * 1.93267 * 16 14 13 18 18 C 1.37885 * 119.99717 * 181.92651 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47805 * 134.45494 * 359.87006 * 12 10 9 25 25 C 1.34236 * 106.99817 * 180.28110 * 8 7 6 26 26 N 1.36830 * 109.94103 * 359.57151 * 25 8 7 27 27 H 0.96998 * 125.07114 * 180.18815 * 26 25 8 28 28 C 1.37699 * 109.87075 * 0.44242 * 26 25 8 29 29 H 1.09004 * 109.46902 * 300.00212 * 1 2 3 30 30 H 1.08994 * 109.47301 * 60.00456 * 1 2 3 31 31 H 1.09004 * 109.46819 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47078 * 239.99743 * 2 1 3 33 33 H 1.09003 * 109.46768 * 119.99575 * 2 1 3 34 34 H 1.08001 * 119.67102 * 359.95829 * 4 3 2 35 35 H 1.07997 * 119.73367 * 180.02562 * 5 4 3 36 36 H 1.08004 * 120.11552 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47165 * 325.00262 * 9 8 7 38 38 H 1.08996 * 109.47154 * 205.00254 * 9 8 7 39 39 H 1.08999 * 113.76805 * 41.06190 * 13 12 10 40 40 H 1.09001 * 113.77518 * 269.66882 * 13 12 10 41 41 H 0.96701 * 113.99575 * 178.07128 * 15 14 13 42 42 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 43 43 H 1.09008 * 113.77106 * 90.37414 * 24 12 10 44 44 H 1.08997 * 113.84172 * 318.91386 * 24 12 10 45 45 H 1.08009 * 125.02797 * 179.73538 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0378 -1.1875 5 6 2.8238 3.3462 -1.2010 6 6 2.9627 4.0454 -0.0352 7 6 2.6359 3.4398 1.1793 8 6 2.6623 3.8800 2.5762 9 6 3.0936 5.2326 3.0820 10 6 1.9313 6.1892 3.0115 11 8 0.8583 5.8099 2.5923 12 7 2.0840 7.4660 3.4152 13 6 1.1950 8.6418 3.4856 14 6 2.1322 9.1532 4.5948 15 8 1.7399 8.7531 5.9093 16 6 2.4422 10.6247 4.4964 17 1 1.9912 11.2206 3.7168 18 6 3.3015 11.2101 5.4019 19 7 3.5717 12.4944 5.3164 20 14 4.0819 10.1791 6.7500 21 1 3.2075 10.1896 7.9502 22 1 4.2493 8.7833 6.2716 23 1 5.4096 10.7450 7.1000 24 6 3.2092 8.2497 3.9669 25 6 2.2348 2.8482 3.3210 26 7 1.9277 1.7863 2.5146 27 1 1.5959 0.9290 2.8242 28 6 2.1653 2.1140 1.1984 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2568 1.4979 -2.1171 35 1 3.0764 3.8153 -2.1404 36 1 3.3241 5.0630 -0.0534 37 1 3.9106 5.6074 2.4655 38 1 3.4292 5.1441 4.1152 39 1 0.1880 8.4110 3.8332 40 1 1.2050 9.2550 2.5845 41 1 2.3423 9.0475 6.6061 42 1 4.1759 12.9063 5.9537 43 1 3.8121 8.7475 3.2073 44 1 3.8078 7.7065 4.6981 45 1 2.1440 2.8561 4.3972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191953617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:16 Heat of formation + Delta-G solvation = 13.983604 kcal Electronic energy + Delta-G solvation = -27420.327827 eV Core-core repulsion = 23597.673909 eV Total energy + Delta-G solvation = -3822.653918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38072 -39.62691 -37.67454 -37.13385 -34.53415 -34.38580 -32.54559 -32.30744 -29.66892 -29.10438 -28.78615 -27.00996 -25.46256 -24.96477 -24.06832 -21.88171 -21.69873 -20.45591 -19.18896 -18.27219 -17.78625 -17.41736 -16.51096 -16.33372 -16.25650 -15.52590 -15.11212 -14.90062 -14.73179 -14.52580 -14.07180 -13.77629 -13.66591 -13.50959 -13.26956 -12.91632 -12.77875 -12.60732 -12.43880 -12.36112 -12.16979 -12.07871 -11.81419 -11.48747 -11.39010 -11.22847 -11.12663 -10.93120 -10.68223 -10.60297 -10.12817 -9.72688 -9.43917 -9.23270 -8.97619 -8.65680 -8.17748 -7.95823 -7.56110 -6.41835 -4.47819 1.11859 1.66119 2.61925 2.98656 3.00572 3.10092 3.13917 3.20286 3.55538 3.91930 4.02965 4.53784 4.65041 4.67165 4.79045 4.95800 5.00218 5.03006 5.10005 5.12669 5.21246 5.30893 5.32486 5.47161 5.56145 5.61067 5.64182 5.68752 5.73471 5.89693 5.92832 5.96078 6.08993 6.09142 6.16913 6.29705 6.38301 6.50951 6.52626 6.62269 6.64047 6.71742 6.81098 7.17632 7.21473 7.50546 8.03762 8.37386 8.52913 8.62519 8.75487 9.15685 10.70408 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.002620 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.681858 B =10683.279411 C =10949.291315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.097 4.097 4 C -0.103 4.103 5 C -0.147 4.147 6 C -0.068 4.068 7 C -0.087 4.087 8 C -0.143 4.143 9 C -0.061 4.061 10 C 0.530 3.470 11 O -0.549 6.549 12 N -0.638 5.638 13 C 0.128 3.872 14 C 0.194 3.806 15 O -0.554 6.554 16 C -0.536 4.536 17 H 0.091 0.909 18 C 0.079 3.921 19 N -0.877 5.877 20 Si 0.858 3.142 21 H -0.268 1.268 22 H -0.255 1.255 23 H -0.284 1.284 24 C 0.063 3.937 25 C 0.059 3.941 26 N -0.594 5.594 27 H 0.413 0.587 28 C 0.103 3.897 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.352 0.648 42 H 0.270 0.730 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 -22.337 -7.210 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.122 4.122 5 C -0.166 4.166 6 C -0.087 4.087 7 C -0.091 4.091 8 C -0.150 4.150 9 C -0.101 4.101 10 C 0.319 3.681 11 O -0.427 6.427 12 N -0.373 5.373 13 C 0.006 3.994 14 C 0.153 3.847 15 O -0.364 6.364 16 C -0.573 4.573 17 H 0.109 0.891 18 C -0.126 4.126 19 N -0.513 5.513 20 Si 0.686 3.314 21 H -0.194 1.194 22 H -0.180 1.180 23 H -0.210 1.210 24 C -0.060 4.060 25 C -0.067 4.067 26 N -0.196 5.196 27 H 0.249 0.751 28 C -0.004 4.004 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.203 0.797 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.486 -22.944 -7.668 24.197 hybrid contribution 0.874 -0.380 1.293 1.606 sum 1.359 -23.324 -6.375 24.218 Atomic orbital electron populations 1.21768 0.94876 1.01388 1.02500 1.20422 0.96047 0.92832 1.02373 1.18790 1.04786 0.96044 0.90391 1.20637 1.00212 0.95153 0.96168 1.20559 1.03386 0.94882 0.97778 1.20266 0.98495 0.99226 0.90720 1.18983 1.03830 0.93158 0.93154 1.19603 1.09443 0.94742 0.91231 1.19865 0.97073 0.90421 1.02781 1.20189 0.89700 0.81285 0.76920 1.90659 1.28302 1.76806 1.46981 1.50193 1.16234 1.07930 1.62902 1.23232 0.95761 0.82812 0.97605 1.20571 0.90391 0.92916 0.80788 1.86469 1.53720 1.79920 1.16316 1.21246 1.28402 0.91050 1.16639 0.89138 1.25018 0.95572 0.94911 0.97106 1.69862 1.34824 1.10150 1.36419 0.87345 0.79689 0.81200 0.83116 1.19399 1.17989 1.21013 1.24646 0.92543 0.91595 0.97213 1.21520 1.01851 0.87063 0.96260 1.41597 1.58860 1.14670 1.04506 0.75105 1.17979 1.02822 0.94961 0.84682 0.92865 0.92224 0.92554 0.90851 0.92033 0.86139 0.86207 0.86364 0.88594 0.88662 0.90822 0.88963 0.79693 0.91929 0.88781 0.91311 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.66 6.07 -27.88 -0.17 -0.83 16 3 C -0.10 -1.11 5.15 -104.47 -0.54 -1.64 16 4 C -0.10 -1.13 9.65 -39.54 -0.38 -1.51 16 5 C -0.15 -1.76 9.97 -39.95 -0.40 -2.16 16 6 C -0.07 -0.96 10.05 -39.65 -0.40 -1.36 16 7 C -0.09 -1.30 6.35 -105.14 -0.67 -1.97 16 8 C -0.14 -2.11 4.81 -102.71 -0.49 -2.60 16 9 C -0.06 -0.91 5.98 -29.04 -0.17 -1.08 16 10 C 0.53 10.20 8.05 -10.98 -0.09 10.11 16 11 O -0.55 -12.40 16.76 5.56 0.09 -12.31 16 12 N -0.64 -12.64 3.61 -178.10 -0.64 -13.28 16 13 C 0.13 2.68 8.23 -2.97 -0.02 2.65 16 14 C 0.19 4.35 1.06 -90.84 -0.10 4.26 16 15 O -0.55 -12.81 13.35 -35.23 -0.47 -13.28 16 16 C -0.54 -13.66 9.19 -34.44 -0.32 -13.98 16 17 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 18 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.88 -24.31 13.96 55.43 0.77 -23.54 16 20 Si 0.86 18.43 24.31 -169.99 -4.13 14.30 16 21 H -0.27 -5.64 7.05 56.52 0.40 -5.24 16 22 H -0.25 -5.02 5.16 56.52 0.29 -4.72 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.06 1.22 7.10 -2.83 -0.02 1.20 16 25 C 0.06 0.73 11.73 -16.73 -0.20 0.53 16 26 N -0.59 -6.60 6.07 -10.65 -0.06 -6.67 16 27 H 0.41 3.24 8.96 -40.82 -0.37 2.87 16 28 C 0.10 1.35 6.97 -83.99 -0.59 0.76 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 33 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 41 H 0.35 7.69 3.57 45.56 0.16 7.86 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.09 1.74 8.09 -51.92 -0.42 1.31 16 44 H 0.07 1.25 6.83 -51.93 -0.35 0.89 16 45 H 0.17 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -32.35 372.28 -9.25 -41.60 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -6.14 Total: 14.04 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -4.28 Total: -6.48 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.07 Total: -43.48 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.38 Total: -25.58 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.13 Total: 14.30 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.35 -9.25 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191953617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.585 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds